Wall clock time and date at job start Tue Mar 31 2020 04:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47291 * 240.00312 * 3 2 1 5 5 H 1.48501 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47325 * 120.00032 * 3 2 1 7 7 C 1.37882 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00048 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.46908 * 111.00157 * 170.00162 * 10 9 7 12 12 C 1.53237 * 109.33940 * 187.25636 * 11 10 9 13 13 N 1.47081 * 108.52308 * 306.17208 * 12 11 10 14 14 C 1.34776 * 120.88155 * 231.19142 * 13 12 11 15 15 O 1.21283 * 119.99779 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99986 * 179.97438 * 14 13 12 17 17 O 1.42895 * 109.46865 * 179.97438 * 16 14 13 18 18 C 1.42902 * 113.99936 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.45696 * 330.70251 * 18 17 16 20 20 C 1.54508 * 110.51248 * 208.09926 * 18 17 16 21 21 C 1.54487 * 104.06159 * 241.21745 * 20 18 17 22 22 O 1.44426 * 104.80045 * 23.97848 * 21 20 18 23 23 C 1.44422 * 105.27817 * 319.48836 * 22 21 20 24 24 C 1.47079 * 118.23751 * 51.45577 * 13 12 11 25 25 C 1.46903 * 111.00288 * 294.30557 * 10 9 7 26 26 H 0.96998 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47102 * 60.00170 * 9 7 2 28 28 H 1.08999 * 109.47626 * 300.00876 * 9 7 2 29 29 H 1.08994 * 109.48852 * 67.29608 * 11 10 9 30 30 H 1.08996 * 109.49100 * 307.21496 * 11 10 9 31 31 H 1.09001 * 109.62890 * 186.46068 * 12 11 10 32 32 H 1.08998 * 109.63085 * 65.87783 * 12 11 10 33 33 H 1.08999 * 109.46682 * 59.99609 * 16 14 13 34 34 H 1.08998 * 109.46803 * 299.99537 * 16 14 13 35 35 H 1.08996 * 110.51460 * 359.86012 * 20 18 17 36 36 H 1.08999 * 110.51389 * 122.57327 * 20 18 17 37 37 H 1.09000 * 110.37190 * 142.81038 * 21 20 18 38 38 H 1.08994 * 110.37314 * 265.03908 * 21 20 18 39 39 H 1.09003 * 110.37061 * 281.68202 * 23 22 21 40 40 H 1.08995 * 110.37431 * 159.34705 * 23 22 21 41 41 H 1.08996 * 109.63196 * 68.25731 * 24 13 12 42 42 H 1.09003 * 109.63129 * 188.83501 * 24 13 12 43 43 H 1.08998 * 109.49112 * 292.70293 * 25 10 9 44 44 H 1.08998 * 109.48574 * 52.78360 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8936 0.2376 12 6 2.5637 -6.0032 0.4104 13 7 3.4617 -5.9862 -0.7543 14 6 3.7120 -7.1123 -1.4513 15 8 3.1945 -8.1580 -1.1202 16 6 4.6350 -7.0721 -2.6420 17 8 4.7397 -8.3800 -3.2078 18 6 5.5960 -8.4525 -4.3495 19 1 5.6014 -7.5018 -4.8827 20 6 5.1517 -9.5969 -5.2878 21 6 6.3696 -10.5465 -5.3245 22 8 7.0826 -10.2797 -4.0972 23 6 7.0298 -8.8462 -3.9303 24 6 4.0838 -4.7090 -1.1348 25 6 2.9768 -3.6491 -1.2504 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 0.8797 -5.1264 -0.6123 30 1 0.9160 -4.8191 1.1410 31 1 2.0632 -6.9695 0.4728 32 1 3.1394 -5.8265 1.3190 33 1 5.6215 -6.7333 -2.3256 34 1 4.2363 -6.3841 -3.3875 35 1 4.2803 -10.1089 -4.8796 36 1 4.9374 -9.2119 -6.2848 37 1 6.0402 -11.5851 -5.3539 38 1 6.9984 -10.3241 -6.1865 39 1 7.7609 -8.3617 -4.5776 40 1 7.2076 -8.5785 -2.8888 41 1 4.8027 -4.4102 -0.3719 42 1 4.5888 -4.8191 -2.0945 43 1 2.3150 -3.8993 -2.0795 44 1 3.4272 -2.6721 -1.4259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332486844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:02 Heat of formation + Delta-G solvation = -132.297450 kcal Electronic energy + Delta-G solvation = -24480.686468 eV Core-core repulsion = 20818.600218 eV Total energy + Delta-G solvation = -3662.086250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35061 -40.50528 -39.05861 -37.80022 -36.00016 -34.42786 -32.66395 -32.17374 -30.32602 -29.72807 -28.71411 -26.89318 -24.66983 -23.97487 -23.66992 -22.17857 -22.11670 -20.03144 -18.62284 -18.48537 -18.02782 -17.33905 -17.29629 -16.81435 -16.65746 -16.44903 -16.02124 -15.85075 -15.58362 -15.32547 -15.22117 -14.93521 -14.27124 -14.07407 -13.74470 -13.60037 -13.49129 -13.06546 -12.91187 -12.78671 -12.68107 -12.56444 -12.40947 -12.38645 -12.31581 -12.13314 -11.77401 -11.75105 -11.30155 -11.08375 -10.82800 -10.60152 -10.42507 -9.81747 -9.07161 -8.19193 -6.29908 1.44792 1.47891 1.48624 1.55498 1.64025 2.41970 2.72975 3.01752 3.13209 3.22071 3.43383 3.61341 3.87042 3.93404 4.01505 4.07467 4.11070 4.20174 4.22115 4.24172 4.26456 4.44406 4.46176 4.50122 4.54510 4.71792 4.74791 4.81304 4.82862 4.89897 4.93946 5.01589 5.06990 5.19589 5.21829 5.39983 5.64418 5.74618 6.02464 6.10979 6.24064 6.39154 6.55030 6.86115 7.06163 7.40324 8.92001 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.002724 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.050724 B =10276.956593 C =10864.837335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.509 3.491 15 O -0.577 6.577 16 C 0.046 3.954 17 O -0.383 6.383 18 C 0.046 3.954 19 H 0.113 0.887 20 C -0.155 4.155 21 C 0.041 3.959 22 O -0.405 6.405 23 C 0.020 3.980 24 C 0.117 3.883 25 C 0.047 3.953 26 H 0.264 0.736 27 H -0.041 1.041 28 H 0.002 0.998 29 H 0.014 0.986 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.017 0.983 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.206 -13.809 -11.883 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.085 4.085 12 C 0.005 3.995 13 N -0.343 5.343 14 C 0.299 3.701 15 O -0.457 6.457 16 C -0.033 4.033 17 O -0.302 6.302 18 C -0.012 4.012 19 H 0.131 0.869 20 C -0.193 4.193 21 C -0.035 4.035 22 O -0.325 6.325 23 C -0.057 4.057 24 C -0.004 4.004 25 C -0.082 4.082 26 H 0.072 0.928 27 H -0.023 1.023 28 H 0.021 0.979 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.035 0.965 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.123 -14.501 -11.119 23.719 hybrid contribution -1.129 1.137 -0.461 1.667 sum 13.994 -13.364 -11.580 22.550 Atomic orbital electron populations 1.70092 1.07966 1.27988 1.51761 1.25961 0.95674 1.03401 0.94810 0.85402 0.78053 0.77638 0.79319 1.18653 1.21505 1.19301 1.21430 0.93910 0.90542 1.50037 0.90948 1.19370 0.90105 0.88973 0.93344 1.62017 1.27008 1.02381 1.35010 1.22417 0.95562 0.90084 1.00413 1.21596 0.91417 0.98148 0.88353 1.48270 1.46858 1.09027 1.30169 1.20930 0.82070 0.82735 0.84405 1.90684 1.53219 1.31718 1.70053 1.22451 1.00088 0.86760 0.94038 1.88098 1.67799 1.28191 1.46100 1.23888 0.89606 1.01243 0.86422 0.86921 1.23132 0.99563 0.96140 1.00415 1.23609 0.91871 1.00607 0.87412 1.89132 1.76692 1.23395 1.43244 1.24140 0.96440 0.81769 1.03303 1.22225 0.94633 0.80355 1.03234 1.22503 0.95657 1.00329 0.89722 0.92772 1.02329 0.97942 0.96769 0.90146 0.89686 0.89686 0.86863 0.87356 0.91238 0.86728 0.88698 0.89634 0.88468 0.89254 0.88988 0.85954 0.96517 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.31 13.29 21.45 0.28 -55.02 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.52 -27.84 8.41 25.60 0.22 -27.63 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 10.71 4.72 85.56 0.40 11.11 16 10 N -0.54 -21.82 4.62 -898.90 -4.15 -25.98 16 11 C 0.04 1.59 5.62 86.38 0.49 2.07 16 12 C 0.13 3.88 6.60 86.35 0.57 4.45 16 13 N -0.61 -16.74 3.00 -817.04 -2.45 -19.19 16 14 C 0.51 14.63 7.78 87.66 0.68 15.31 16 15 O -0.58 -22.13 15.95 16.00 0.26 -21.87 16 16 C 0.05 0.86 4.63 71.24 0.33 1.19 16 17 O -0.38 -9.06 9.52 -129.94 -1.24 -10.29 16 18 C 0.05 0.68 3.59 31.61 0.11 0.80 16 19 H 0.11 0.92 7.84 -2.39 -0.02 0.90 16 20 C -0.15 -2.14 6.90 31.61 0.22 -1.92 16 21 C 0.04 0.56 7.63 72.49 0.55 1.12 16 22 O -0.41 -8.48 11.65 -148.98 -1.74 -10.22 16 23 C 0.02 0.30 7.38 72.48 0.53 0.84 16 24 C 0.12 2.69 6.53 86.50 0.57 3.26 16 25 C 0.05 1.55 5.47 86.54 0.47 2.02 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 28 H 0.00 0.14 7.97 -2.39 -0.02 0.12 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 2.86 7.99 -2.39 -0.02 2.84 16 31 H 0.08 2.68 7.06 -2.39 -0.02 2.66 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 1.38 7.99 -2.39 -0.02 1.37 16 34 H 0.11 1.47 7.64 -2.39 -0.02 1.45 16 35 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.12 1.73 6.02 -2.39 -0.01 1.72 16 43 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.09 3.16 6.67 -2.39 -0.02 3.14 16 Total: -1.00 -76.06 353.57 -0.43 -76.49 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.97 Total: 8.88 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.61 Total: 13.06 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -6.32 Total: -100.19 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.72 Total: -42.38 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -76.06 -0.43 -76.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332486844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.810 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds