Wall clock time and date at job start Tue Mar 31 2020 04:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48502 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47428 * 300.00420 * 3 2 1 6 6 H 1.48501 * 109.46987 * 60.00608 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99915 * 170.00172 * 10 9 7 12 12 C 1.53235 * 109.34089 * 187.25745 * 11 10 9 13 13 N 1.47078 * 108.51875 * 306.16805 * 12 11 10 14 14 C 1.34777 * 120.88364 * 231.18486 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 H 1.09003 * 110.75059 * 32.01689 * 18 17 16 20 20 C 1.55306 * 110.84811 * 155.71101 * 18 17 16 21 21 C 1.54944 * 100.94011 * 152.32396 * 20 18 17 22 22 O 1.43645 * 105.13694 * 323.55373 * 21 20 18 23 23 C 1.43243 * 109.97102 * 24.42992 * 22 21 20 24 24 C 1.47083 * 118.23673 * 51.46281 * 13 12 11 25 25 C 1.46894 * 111.00366 * 294.30322 * 10 9 7 26 26 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47014 * 60.00085 * 9 7 2 28 28 H 1.09003 * 109.47023 * 300.00816 * 9 7 2 29 29 H 1.09000 * 109.48797 * 67.29580 * 11 10 9 30 30 H 1.09005 * 109.49020 * 307.22016 * 11 10 9 31 31 H 1.09004 * 109.62945 * 186.46254 * 12 11 10 32 32 H 1.08996 * 109.79112 * 65.97391 * 12 11 10 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 35 35 H 1.08996 * 111.12690 * 270.24306 * 20 18 17 36 36 H 1.09001 * 111.12193 * 34.40689 * 20 18 17 37 37 H 1.08995 * 110.31042 * 204.64393 * 21 20 18 38 38 H 1.09003 * 110.39571 * 82.51308 * 21 20 18 39 39 H 1.08993 * 109.82986 * 238.77306 * 23 22 21 40 40 H 1.08998 * 109.83038 * 117.80018 * 23 22 21 41 41 H 1.08995 * 109.63429 * 68.24707 * 24 13 12 42 42 H 1.09000 * 109.62775 * 188.83040 * 24 13 12 43 43 H 1.08997 * 109.49334 * 292.70971 * 25 10 9 44 44 H 1.09002 * 109.49100 * 52.78622 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4105 13 7 3.4618 -5.9861 -0.7543 14 6 3.7122 -7.1122 -1.4512 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 8 4.7398 -8.3799 -3.2079 18 6 5.5977 -8.4528 -4.3484 19 1 6.4119 -7.7329 -4.2658 20 6 6.1451 -9.8939 -4.5371 21 6 6.3781 -9.9218 -6.0686 22 8 5.2988 -9.1553 -6.6263 23 6 4.7994 -8.2324 -5.6513 24 6 4.0840 -4.7089 -1.1347 25 6 2.9769 -3.6490 -1.2503 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8798 -5.1263 -0.6123 30 1 0.9161 -4.8191 1.1411 31 1 2.0634 -6.9694 0.4728 32 1 3.1400 -5.8299 1.3194 33 1 5.6225 -6.7339 -2.3242 34 1 4.2381 -6.3839 -3.3870 35 1 7.0803 -10.0330 -3.9948 36 1 5.4058 -10.6371 -4.2386 37 1 6.3444 -10.9468 -6.4378 38 1 7.3354 -9.4626 -6.3157 39 1 3.7407 -8.4202 -5.4726 40 1 4.9406 -7.2104 -6.0031 41 1 4.8028 -4.4101 -0.3719 42 1 4.5889 -4.8190 -2.0945 43 1 2.3151 -3.8992 -2.0795 44 1 3.4273 -2.6721 -1.4260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332486848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:05 Heat of formation + Delta-G solvation = -108.214992 kcal Electronic energy + Delta-G solvation = -24454.881364 eV Core-core repulsion = 20793.839409 eV Total energy + Delta-G solvation = -3661.041956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31733 -39.72346 -37.83608 -36.97680 -34.48316 -32.52908 -31.89665 -31.02270 -29.40965 -28.65942 -27.45403 -25.32880 -23.36200 -22.89136 -22.08932 -21.90047 -20.72077 -18.83052 -17.84372 -17.38333 -16.54254 -16.44431 -16.21690 -15.97484 -15.45919 -14.97347 -14.79380 -14.55104 -14.40444 -13.96787 -13.86049 -13.64553 -13.56179 -12.91765 -12.71708 -12.68044 -12.32134 -12.04737 -11.91248 -11.87264 -11.35978 -11.18053 -11.11726 -11.03789 -10.81585 -10.70148 -10.56971 -10.04936 -9.95804 -9.88997 -9.66812 -9.32505 -8.58494 -8.50189 -7.40176 -6.11276 -4.13713 2.55564 2.59266 3.24820 3.32795 3.36009 3.38208 3.65775 4.00329 4.33858 4.38710 4.46243 4.53323 4.67879 4.74687 4.80720 4.88895 4.94447 5.17284 5.24023 5.24783 5.29556 5.30821 5.33962 5.43457 5.51879 5.56441 5.60146 5.68519 5.78590 5.96041 6.22173 6.36727 6.37339 6.53539 6.55786 6.74360 7.15594 7.21785 7.42740 7.68491 7.95121 8.05605 8.17117 8.40976 8.93647 9.51159 10.99538 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002805 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.748090 B = 9978.245486 C =10732.236792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.607 5.607 14 C 0.515 3.485 15 O -0.529 6.529 16 C 0.042 3.958 17 O -0.345 6.345 18 C 0.053 3.947 19 H 0.082 0.918 20 C -0.152 4.152 21 C 0.051 3.949 22 O -0.379 6.379 23 C 0.026 3.974 24 C 0.107 3.893 25 C 0.049 3.951 26 H 0.262 0.738 27 H -0.008 1.008 28 H 0.032 0.968 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.026 0.974 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 -15.275 -8.333 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.342 5.342 14 C 0.302 3.698 15 O -0.406 6.406 16 C -0.037 4.037 17 O -0.263 6.263 18 C -0.005 4.005 19 H 0.100 0.900 20 C -0.189 4.189 21 C -0.025 4.025 22 O -0.299 6.299 23 C -0.051 4.051 24 C -0.016 4.016 25 C -0.080 4.080 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.053 -15.822 -7.903 21.981 hybrid contribution -0.022 1.328 -0.522 1.427 sum 13.031 -14.494 -8.425 21.233 Atomic orbital electron populations 1.69966 1.06104 1.26818 1.50719 1.25005 0.94869 0.99403 0.95335 0.86440 0.80004 0.83374 0.77571 1.19632 1.21110 1.20973 1.21161 0.93472 0.89829 1.50404 0.91744 1.19739 0.89990 0.87131 0.96311 1.62084 1.28159 1.02782 1.33071 1.22415 0.94934 0.90439 1.01081 1.21770 0.91630 0.99640 0.87165 1.48175 1.47157 1.08277 1.30594 1.20077 0.82269 0.83710 0.83772 1.90703 1.51231 1.29983 1.68651 1.22370 0.99752 0.86387 0.95227 1.88078 1.66917 1.27407 1.43875 1.23758 0.92341 0.98391 0.86043 0.90009 1.23307 1.02758 0.96302 0.96564 1.23355 0.90604 0.96882 0.91659 1.88442 1.51188 1.52935 1.37293 1.23705 0.99663 0.93648 0.88072 1.22157 0.96378 0.82751 1.00304 1.22415 0.95041 0.98977 0.91552 0.92869 0.99053 0.94956 0.95442 0.89899 0.89326 0.90745 0.89965 0.90007 0.89113 0.88869 0.89163 0.91817 0.89895 0.90880 0.90200 0.90509 0.95577 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.54 8.41 -34.44 -0.29 -13.83 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 10 N -0.54 -10.72 4.62 -235.47 -1.09 -11.81 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.82 6.60 -3.61 -0.02 1.80 16 13 N -0.61 -8.74 3.00 -172.18 -0.52 -9.26 16 14 C 0.52 7.62 7.78 -10.98 -0.09 7.53 16 15 O -0.53 -9.86 15.95 -14.35 -0.23 -10.09 16 16 C 0.04 0.46 4.66 36.01 0.17 0.63 16 17 O -0.35 -4.20 9.61 -55.14 -0.53 -4.73 16 18 C 0.05 0.47 3.45 -24.79 -0.09 0.38 16 19 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 20 C -0.15 -1.15 6.89 -24.48 -0.17 -1.32 16 21 C 0.05 0.37 7.78 38.18 0.30 0.67 16 22 O -0.38 -3.97 11.36 -35.23 -0.40 -4.37 16 23 C 0.03 0.25 7.58 37.88 0.29 0.53 16 24 C 0.11 1.38 6.53 -3.36 -0.02 1.36 16 25 C 0.05 0.84 5.47 -3.47 -0.02 0.83 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 28 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 31 H 0.09 1.35 7.06 -51.93 -0.37 0.99 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 34 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.73 6.02 -51.93 -0.31 0.42 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 1.78 6.67 -51.93 -0.35 1.44 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -32.91 353.74 -9.03 -41.94 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.23 Total: -3.01 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.08 Total: 5.44 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.87 Total: -46.23 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.16 Total: -19.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.91 -9.03 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332486848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.274 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds