Wall clock time and date at job start Tue Mar 31 2020 04:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48502 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47428 * 300.00420 * 3 2 1 6 6 H 1.48501 * 109.46987 * 60.00608 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00297 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99915 * 170.00172 * 10 9 7 12 12 C 1.53235 * 109.34089 * 187.25745 * 11 10 9 13 13 N 1.47078 * 108.51875 * 306.16805 * 12 11 10 14 14 C 1.34777 * 120.88364 * 231.18486 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 H 1.09003 * 110.75059 * 32.01689 * 18 17 16 20 20 C 1.55306 * 110.84811 * 155.71101 * 18 17 16 21 21 C 1.54944 * 100.94011 * 152.32396 * 20 18 17 22 22 O 1.43645 * 105.13694 * 323.55373 * 21 20 18 23 23 C 1.43243 * 109.97102 * 24.42992 * 22 21 20 24 24 C 1.47083 * 118.23673 * 51.46281 * 13 12 11 25 25 C 1.46894 * 111.00366 * 294.30322 * 10 9 7 26 26 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47014 * 60.00085 * 9 7 2 28 28 H 1.09003 * 109.47023 * 300.00816 * 9 7 2 29 29 H 1.09000 * 109.48797 * 67.29580 * 11 10 9 30 30 H 1.09005 * 109.49020 * 307.22016 * 11 10 9 31 31 H 1.09004 * 109.62945 * 186.46254 * 12 11 10 32 32 H 1.08996 * 109.79112 * 65.97391 * 12 11 10 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 35 35 H 1.08996 * 111.12690 * 270.24306 * 20 18 17 36 36 H 1.09001 * 111.12193 * 34.40689 * 20 18 17 37 37 H 1.08995 * 110.31042 * 204.64393 * 21 20 18 38 38 H 1.09003 * 110.39571 * 82.51308 * 21 20 18 39 39 H 1.08993 * 109.82986 * 238.77306 * 23 22 21 40 40 H 1.08998 * 109.83038 * 117.80018 * 23 22 21 41 41 H 1.08995 * 109.63429 * 68.24707 * 24 13 12 42 42 H 1.09000 * 109.62775 * 188.83040 * 24 13 12 43 43 H 1.08997 * 109.49334 * 292.70971 * 25 10 9 44 44 H 1.09002 * 109.49100 * 52.78622 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4105 13 7 3.4618 -5.9861 -0.7543 14 6 3.7122 -7.1122 -1.4512 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 8 4.7398 -8.3799 -3.2079 18 6 5.5977 -8.4528 -4.3484 19 1 6.4119 -7.7329 -4.2658 20 6 6.1451 -9.8939 -4.5371 21 6 6.3781 -9.9218 -6.0686 22 8 5.2988 -9.1553 -6.6263 23 6 4.7994 -8.2324 -5.6513 24 6 4.0840 -4.7089 -1.1347 25 6 2.9769 -3.6490 -1.2503 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8798 -5.1263 -0.6123 30 1 0.9161 -4.8191 1.1411 31 1 2.0634 -6.9694 0.4728 32 1 3.1400 -5.8299 1.3194 33 1 5.6225 -6.7339 -2.3242 34 1 4.2381 -6.3839 -3.3870 35 1 7.0803 -10.0330 -3.9948 36 1 5.4058 -10.6371 -4.2386 37 1 6.3444 -10.9468 -6.4378 38 1 7.3354 -9.4626 -6.3157 39 1 3.7407 -8.4202 -5.4726 40 1 4.9406 -7.2104 -6.0031 41 1 4.8028 -4.4101 -0.3719 42 1 4.5889 -4.8190 -2.0945 43 1 2.3151 -3.8992 -2.0795 44 1 3.4273 -2.6721 -1.4260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332486848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:05 Heat of formation + Delta-G solvation = -132.074572 kcal Electronic energy + Delta-G solvation = -24455.915993 eV Core-core repulsion = 20793.839409 eV Total energy + Delta-G solvation = -3662.076585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35931 -40.54194 -39.08891 -37.94250 -36.00379 -34.43127 -32.69973 -32.18640 -30.36610 -29.84697 -28.71566 -26.89636 -24.67047 -23.88596 -23.43453 -22.54725 -22.12092 -20.03163 -18.67448 -18.49494 -18.24081 -17.37783 -17.24925 -16.88436 -16.66240 -16.27719 -16.02272 -15.74868 -15.55350 -15.31618 -15.26486 -14.87351 -14.29590 -14.22581 -14.05295 -13.56752 -13.53415 -13.31838 -13.04026 -12.75863 -12.69244 -12.61062 -12.45464 -12.40692 -12.30812 -12.10814 -11.78187 -11.73859 -11.26888 -10.84588 -10.76383 -10.62395 -10.54405 -9.82018 -9.07515 -8.19857 -6.30342 1.43978 1.45232 1.47474 1.58001 1.60496 2.41470 2.57706 2.99205 3.12862 3.21782 3.37229 3.47925 3.85027 3.92784 3.96232 4.01656 4.10594 4.18163 4.21085 4.22676 4.26254 4.31406 4.44479 4.51996 4.62630 4.71480 4.72194 4.80406 4.83147 4.91263 4.93920 5.01361 5.03687 5.19465 5.21700 5.39684 5.64560 5.93587 5.98924 6.02412 6.22109 6.37916 6.54736 6.86266 7.04979 7.40040 8.91799 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002805 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.748090 B = 9978.245486 C =10732.236792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.511 3.489 15 O -0.576 6.576 16 C 0.045 3.955 17 O -0.376 6.376 18 C 0.052 3.948 19 H 0.114 0.886 20 C -0.151 4.151 21 C 0.048 3.952 22 O -0.405 6.405 23 C 0.024 3.976 24 C 0.118 3.882 25 C 0.046 3.954 26 H 0.263 0.737 27 H -0.041 1.041 28 H 0.003 0.997 29 H 0.013 0.987 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.016 0.984 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.790 -14.835 -9.063 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.091 0.909 9 C 0.081 3.919 10 N -0.263 5.263 11 C -0.085 4.085 12 C 0.005 3.995 13 N -0.343 5.343 14 C 0.300 3.700 15 O -0.455 6.455 16 C -0.034 4.034 17 O -0.294 6.294 18 C -0.006 4.006 19 H 0.132 0.868 20 C -0.189 4.189 21 C -0.027 4.027 22 O -0.325 6.325 23 C -0.053 4.053 24 C -0.004 4.004 25 C -0.083 4.083 26 H 0.072 0.928 27 H -0.024 1.024 28 H 0.021 0.979 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.140 0.860 43 H 0.034 0.966 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.533 -15.392 -8.644 24.186 hybrid contribution -1.142 1.116 -0.316 1.628 sum 15.391 -14.276 -8.960 22.825 Atomic orbital electron populations 1.70109 1.07970 1.27849 1.51945 1.25965 0.95677 1.03422 0.94864 0.85299 0.79311 0.78387 0.77401 1.17911 1.20753 1.20931 1.21488 0.93923 0.90509 1.49722 0.90914 1.19385 0.90127 0.89024 0.93351 1.62019 1.26977 1.02385 1.34956 1.22426 0.95606 0.90111 1.00404 1.21594 0.91387 0.98136 0.88338 1.48264 1.46841 1.09000 1.30186 1.20866 0.82074 0.82777 0.84320 1.90683 1.53174 1.31666 1.70017 1.22481 1.00544 0.86568 0.93833 1.88052 1.68100 1.28234 1.45027 1.23969 0.92445 0.99745 0.84443 0.86840 1.23334 1.03132 0.95305 0.97084 1.23559 0.90612 0.97328 0.91233 1.88408 1.52364 1.53556 1.38213 1.23731 0.98661 0.94282 0.88663 1.22224 0.94614 0.80357 1.03241 1.22506 0.95688 1.00373 0.89722 0.92791 1.02379 0.97885 0.96842 0.90116 0.89629 0.89556 0.86156 0.87867 0.86957 0.90869 0.88340 0.89664 0.92126 0.89282 0.88848 0.86020 0.96612 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.52 -27.68 8.41 25.60 0.22 -27.46 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.65 4.72 85.56 0.40 11.05 16 10 N -0.54 -21.68 4.62 -898.89 -4.15 -25.83 16 11 C 0.04 1.55 5.62 86.38 0.49 2.03 16 12 C 0.13 3.80 6.60 86.35 0.57 4.37 16 13 N -0.61 -16.28 3.00 -817.06 -2.45 -18.74 16 14 C 0.51 14.12 7.78 87.66 0.68 14.80 16 15 O -0.58 -21.26 15.95 16.01 0.26 -21.00 16 16 C 0.04 0.81 4.66 71.24 0.33 1.14 16 17 O -0.38 -8.33 9.61 -129.94 -1.25 -9.58 16 18 C 0.05 0.77 3.45 31.85 0.11 0.88 16 19 H 0.11 0.96 7.89 -2.39 -0.02 0.95 16 20 C -0.15 -1.98 6.89 32.05 0.22 -1.76 16 21 C 0.05 0.59 7.78 72.65 0.56 1.16 16 22 O -0.41 -7.96 11.36 -148.98 -1.69 -9.65 16 23 C 0.02 0.41 7.58 72.45 0.55 0.96 16 24 C 0.12 2.65 6.53 86.50 0.57 3.21 16 25 C 0.05 1.52 5.47 86.54 0.47 1.99 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 28 H 0.00 0.17 7.97 -2.39 -0.02 0.15 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 2.84 7.99 -2.38 -0.02 2.82 16 31 H 0.09 2.62 7.06 -2.39 -0.02 2.60 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.12 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.10 1.44 7.67 -2.39 -0.02 1.42 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.12 1.69 6.02 -2.39 -0.01 1.67 16 43 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.09 3.15 6.67 -2.39 -0.02 3.13 16 Total: -1.00 -74.28 353.74 -0.37 -74.65 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.97 Total: 8.26 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.63 Total: 12.75 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -6.32 Total: -99.68 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -2.69 Total: -40.23 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.28 -0.37 -74.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332486848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.426 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds