Wall clock time and date at job start Tue Mar 31 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.45685 * 2 1 4 4 C 1.52816 * 109.33724 * 240.27745 * 2 1 3 5 5 C 1.51191 * 108.68840 * 159.98002 * 4 2 1 6 6 O 1.21281 * 119.76717 * 251.18568 * 5 4 2 7 7 N 1.33633 * 120.46147 * 71.20741 * 5 4 2 8 8 C 1.46913 * 120.62484 * 0.24331 * 7 5 4 9 9 C 1.53226 * 108.82242 * 288.06544 * 8 7 5 10 10 N 1.46077 * 109.72154 * 81.59580 * 9 8 7 11 11 C 1.34780 * 118.72912 * 116.16438 * 10 9 8 12 12 O 1.21586 * 119.99806 * 186.04702 * 11 10 9 13 13 N 1.34772 * 119.99832 * 6.04811 * 11 10 9 14 14 C 1.46508 * 119.99618 * 174.95357 * 13 11 10 15 15 C 1.50707 * 109.46917 * 179.97438 * 14 13 11 16 16 O 1.21285 * 120.00094 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99519 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99388 * 179.72385 * 17 15 14 19 19 H 1.07998 * 120.00058 * 0.27324 * 18 17 15 20 20 C 1.38947 * 119.99613 * 180.27596 * 18 17 15 21 21 N 1.31410 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46863 * 89.99863 * 22 20 18 24 24 H 1.48497 * 109.47477 * 210.00031 * 22 20 18 25 25 H 1.48498 * 109.46995 * 330.00284 * 22 20 18 26 26 H 1.08997 * 109.47028 * 293.99705 * 1 2 3 27 27 H 1.09001 * 109.46719 * 53.99523 * 1 2 3 28 28 H 1.09003 * 109.47038 * 173.98939 * 1 2 3 29 29 H 1.09003 * 109.63421 * 40.18537 * 4 2 1 30 30 H 1.08992 * 109.66456 * 279.79026 * 4 2 1 31 31 H 0.96999 * 119.68566 * 180.26369 * 7 5 4 32 32 H 1.08998 * 109.58361 * 168.26198 * 8 7 5 33 33 H 1.09006 * 109.57823 * 47.86227 * 8 7 5 34 34 H 1.09000 * 109.42890 * 321.51972 * 9 8 7 35 35 H 1.09004 * 109.38855 * 201.64792 * 9 8 7 36 36 H 0.97001 * 120.00300 * 354.94719 * 13 11 10 37 37 H 1.08998 * 109.47084 * 60.00137 * 14 13 11 38 38 H 1.09004 * 109.46675 * 299.99722 * 14 13 11 39 39 H 0.96992 * 119.99868 * 0.02562 * 17 15 14 40 40 H 0.96998 * 120.00070 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0360 -0.7149 -1.2522 5 6 3.4661 -0.2948 -1.5054 6 8 3.7238 0.4300 -2.4430 7 7 4.4482 -0.7170 -0.7035 8 6 4.1581 -1.6000 0.4342 9 6 3.4377 -0.7903 1.5174 10 7 2.0169 -0.6885 1.1937 11 6 1.1208 -1.2561 2.0253 12 8 -0.0569 -1.2817 1.7239 13 7 1.5301 -1.7951 3.1907 14 6 0.5455 -2.3125 4.1443 15 6 1.2575 -2.8570 5.3558 16 8 2.4681 -2.8172 5.4165 17 7 0.5487 -3.3881 6.3718 18 6 1.1968 -3.8886 7.4714 19 1 2.2748 -3.8532 7.5255 20 6 0.4665 -4.4413 8.5163 21 7 -0.8453 -4.4839 8.4507 22 14 1.3493 -5.1239 10.0143 23 1 1.5117 -4.0487 11.0257 24 1 0.5524 -6.2339 10.5956 25 1 2.6858 -5.6315 9.6126 26 1 -0.3633 0.4179 0.9388 27 1 -0.3633 0.6041 -0.8314 28 1 -0.3633 -1.0220 -0.1076 29 1 1.4172 -0.4397 -2.1064 30 1 1.9927 -1.7935 -1.1015 31 1 5.3613 -0.4374 -0.8740 32 1 5.0904 -1.9979 0.8350 33 1 3.5196 -2.4204 0.1063 34 1 3.8699 0.2089 1.5708 35 1 3.5556 -1.2882 2.4799 36 1 2.4766 -1.8406 3.3982 37 1 -0.0319 -3.1086 3.6743 38 1 -0.1245 -1.5078 4.4472 39 1 -0.4194 -3.4202 6.3229 40 1 -1.3551 -4.8701 9.1800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346657401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:01 Heat of formation + Delta-G solvation = -66.743625 kcal Electronic energy + Delta-G solvation = -24554.906795 eV Core-core repulsion = 20792.122829 eV Total energy + Delta-G solvation = -3762.783966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18282 -39.66478 -38.36134 -36.70429 -35.36538 -34.48521 -33.98269 -32.45848 -31.40473 -28.87963 -28.18641 -27.28758 -24.59784 -23.76833 -22.58925 -20.34790 -19.94616 -19.53988 -18.34587 -17.95403 -17.42578 -17.01590 -16.43708 -15.88862 -15.66122 -15.07272 -14.77481 -14.64038 -14.29089 -14.20673 -14.00824 -13.50772 -13.36325 -13.23253 -12.84511 -12.62316 -12.37045 -12.20707 -12.11141 -11.89248 -11.67133 -11.63773 -11.35718 -11.15932 -10.49832 -10.35814 -10.08492 -9.68164 -9.64486 -9.09124 -8.89298 -8.68389 -8.60253 -8.14790 -6.55802 -3.98066 2.33503 2.51834 2.96286 3.08036 3.19138 3.20873 3.23923 3.69701 3.80554 4.07783 4.21954 4.56059 4.61115 4.69460 4.76316 4.82977 4.91165 4.99885 5.13012 5.24073 5.35055 5.48305 5.60804 5.74294 5.83868 5.94471 6.02705 6.12796 6.25232 6.45053 6.58644 6.74873 6.84165 6.91357 7.41685 7.87669 7.92389 8.02797 8.39988 8.66709 9.00063 9.34678 9.82052 10.60984 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.002963 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.431640 B = 9446.346721 C =10150.512946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.172 3.828 3 H 0.074 0.926 4 C -0.155 4.155 5 C 0.519 3.481 6 O -0.551 6.551 7 N -0.725 5.725 8 C 0.090 3.910 9 C 0.087 3.913 10 N -0.629 5.629 11 C 0.701 3.299 12 O -0.580 6.580 13 N -0.725 5.725 14 C 0.127 3.873 15 C 0.428 3.572 16 O -0.600 6.600 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.401 0.599 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.404 0.596 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 5.696 -14.354 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.429 6.429 7 N -0.377 5.377 8 C -0.036 4.036 9 C -0.038 4.038 10 N -0.367 5.367 11 C 0.403 3.597 12 O -0.459 6.459 13 N -0.386 5.386 14 C -0.002 4.002 15 C 0.213 3.787 16 O -0.487 6.487 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.237 0.763 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.543 5.944 -14.798 16.883 hybrid contribution 0.734 -0.412 0.968 1.283 sum 6.277 5.532 -13.830 16.164 Atomic orbital electron populations 1.22301 0.90949 1.03983 1.01507 1.20702 0.96956 0.94308 0.81292 0.90851 1.22495 0.92858 1.03217 1.01028 1.20666 0.88193 0.79391 0.81205 1.90754 1.84499 1.37263 1.30406 1.45950 1.10738 1.50912 1.30144 1.22254 1.02103 0.92801 0.86425 1.22087 0.81069 1.01792 0.98857 1.47035 1.05430 1.59102 1.25139 1.15996 0.84968 0.78539 0.80226 1.91002 1.16042 1.63834 1.75020 1.45219 1.11421 1.64255 1.17710 1.20800 0.90785 0.99502 0.89079 1.19751 0.88103 0.85461 0.85347 1.90476 1.13908 1.63117 1.81237 1.41791 1.09523 1.51244 1.15677 1.19720 0.93862 1.35554 0.94389 0.87674 1.25327 0.95519 0.97283 0.99540 1.69610 1.05177 1.44694 1.33896 0.85816 0.79175 0.78476 0.80586 1.20259 1.20782 1.19309 0.90457 0.94367 0.89822 0.87207 0.88621 0.76291 0.87908 0.89756 0.90213 0.88010 0.75518 0.89878 0.90064 0.77003 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 7.43 37.16 0.28 -1.23 16 2 C 0.17 1.79 3.19 -68.21 -0.22 1.57 16 3 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 4 C -0.15 -1.46 4.96 -27.74 -0.14 -1.60 16 5 C 0.52 5.53 7.11 -11.25 -0.08 5.45 16 6 O -0.55 -8.02 17.91 5.56 0.10 -7.92 16 7 N -0.72 -5.61 5.30 -59.99 -0.32 -5.93 16 8 C 0.09 0.58 6.49 -3.70 -0.02 0.56 16 9 C 0.09 0.72 6.18 -4.15 -0.03 0.70 16 10 N -0.63 -6.90 2.78 -172.36 -0.48 -7.38 16 11 C 0.70 10.03 8.04 -86.92 -0.70 9.33 16 12 O -0.58 -9.61 11.40 5.29 0.06 -9.55 16 13 N -0.73 -10.96 5.42 -66.40 -0.36 -11.32 16 14 C 0.13 2.17 6.16 -5.19 -0.03 2.14 16 15 C 0.43 9.27 7.85 -10.98 -0.09 9.18 16 16 O -0.60 -14.44 15.24 5.55 0.08 -14.36 16 17 N -0.55 -13.04 5.29 -10.96 -0.06 -13.10 16 18 C -0.31 -8.04 9.68 -14.93 -0.14 -8.18 16 19 H 0.11 2.87 7.16 -52.49 -0.38 2.50 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.30 13.05 55.50 0.72 -22.57 16 22 Si 0.93 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H 0.08 1.06 6.61 -51.93 -0.34 0.71 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 1.10 6.60 -51.93 -0.34 0.75 16 29 H 0.11 0.98 7.98 -51.93 -0.41 0.57 16 30 H 0.10 0.86 7.08 -51.93 -0.37 0.49 16 31 H 0.40 2.62 8.91 -40.82 -0.36 2.26 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.60 7.03 -51.93 -0.37 0.24 16 34 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.10 0.89 5.29 -51.93 -0.27 0.61 16 36 H 0.40 5.89 4.70 -40.82 -0.19 5.69 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.40 9.10 7.90 -40.82 -0.32 8.77 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -32.06 326.04 -6.64 -38.70 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: -1.27 Total: 18.49 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.49 Total: -60.30 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: 0.24 Total: -31.83 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.06 -6.64 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346657401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.039 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds