Wall clock time and date at job start Tue Mar 31 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.45685 * 2 1 4 4 C 1.52816 * 109.33724 * 240.27745 * 2 1 3 5 5 C 1.51191 * 108.68840 * 159.98002 * 4 2 1 6 6 O 1.21281 * 119.76717 * 251.18568 * 5 4 2 7 7 N 1.33633 * 120.46147 * 71.20741 * 5 4 2 8 8 C 1.46913 * 120.62484 * 0.24331 * 7 5 4 9 9 C 1.53226 * 108.82242 * 288.06544 * 8 7 5 10 10 N 1.46077 * 109.72154 * 81.59580 * 9 8 7 11 11 C 1.34780 * 118.72912 * 116.16438 * 10 9 8 12 12 O 1.21586 * 119.99806 * 186.04702 * 11 10 9 13 13 N 1.34772 * 119.99832 * 6.04811 * 11 10 9 14 14 C 1.46508 * 119.99618 * 174.95357 * 13 11 10 15 15 C 1.50707 * 109.46917 * 179.97438 * 14 13 11 16 16 O 1.21285 * 120.00094 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99519 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99388 * 179.72385 * 17 15 14 19 19 H 1.07998 * 120.00058 * 0.27324 * 18 17 15 20 20 C 1.38947 * 119.99613 * 180.27596 * 18 17 15 21 21 N 1.31410 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46863 * 89.99863 * 22 20 18 24 24 H 1.48497 * 109.47477 * 210.00031 * 22 20 18 25 25 H 1.48498 * 109.46995 * 330.00284 * 22 20 18 26 26 H 1.08997 * 109.47028 * 293.99705 * 1 2 3 27 27 H 1.09001 * 109.46719 * 53.99523 * 1 2 3 28 28 H 1.09003 * 109.47038 * 173.98939 * 1 2 3 29 29 H 1.09003 * 109.63421 * 40.18537 * 4 2 1 30 30 H 1.08992 * 109.66456 * 279.79026 * 4 2 1 31 31 H 0.96999 * 119.68566 * 180.26369 * 7 5 4 32 32 H 1.08998 * 109.58361 * 168.26198 * 8 7 5 33 33 H 1.09006 * 109.57823 * 47.86227 * 8 7 5 34 34 H 1.09000 * 109.42890 * 321.51972 * 9 8 7 35 35 H 1.09004 * 109.38855 * 201.64792 * 9 8 7 36 36 H 0.97001 * 120.00300 * 354.94719 * 13 11 10 37 37 H 1.08998 * 109.47084 * 60.00137 * 14 13 11 38 38 H 1.09004 * 109.46675 * 299.99722 * 14 13 11 39 39 H 0.96992 * 119.99868 * 0.02562 * 17 15 14 40 40 H 0.96998 * 120.00070 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0360 -0.7149 -1.2522 5 6 3.4661 -0.2948 -1.5054 6 8 3.7238 0.4300 -2.4430 7 7 4.4482 -0.7170 -0.7035 8 6 4.1581 -1.6000 0.4342 9 6 3.4377 -0.7903 1.5174 10 7 2.0169 -0.6885 1.1937 11 6 1.1208 -1.2561 2.0253 12 8 -0.0569 -1.2817 1.7239 13 7 1.5301 -1.7951 3.1907 14 6 0.5455 -2.3125 4.1443 15 6 1.2575 -2.8570 5.3558 16 8 2.4681 -2.8172 5.4165 17 7 0.5487 -3.3881 6.3718 18 6 1.1968 -3.8886 7.4714 19 1 2.2748 -3.8532 7.5255 20 6 0.4665 -4.4413 8.5163 21 7 -0.8453 -4.4839 8.4507 22 14 1.3493 -5.1239 10.0143 23 1 1.5117 -4.0487 11.0257 24 1 0.5524 -6.2339 10.5956 25 1 2.6858 -5.6315 9.6126 26 1 -0.3633 0.4179 0.9388 27 1 -0.3633 0.6041 -0.8314 28 1 -0.3633 -1.0220 -0.1076 29 1 1.4172 -0.4397 -2.1064 30 1 1.9927 -1.7935 -1.1015 31 1 5.3613 -0.4374 -0.8740 32 1 5.0904 -1.9979 0.8350 33 1 3.5196 -2.4204 0.1063 34 1 3.8699 0.2089 1.5708 35 1 3.5556 -1.2882 2.4799 36 1 2.4766 -1.8406 3.3982 37 1 -0.0319 -3.1086 3.6743 38 1 -0.1245 -1.5078 4.4472 39 1 -0.4194 -3.4202 6.3229 40 1 -1.3551 -4.8701 9.1800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346657401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:00 Heat of formation + Delta-G solvation = -92.332309 kcal Electronic energy + Delta-G solvation = -24556.016403 eV Core-core repulsion = 20792.122829 eV Total energy + Delta-G solvation = -3763.893574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14837 -40.70599 -40.02413 -37.66760 -36.53015 -35.88085 -35.33754 -33.55361 -33.23395 -29.76657 -29.15959 -28.58194 -26.36575 -24.51714 -23.61007 -21.36526 -21.15722 -20.86936 -20.02980 -19.15242 -18.27978 -17.87591 -17.51657 -17.36018 -16.85363 -16.40515 -16.20768 -16.03040 -15.66519 -15.45394 -15.04803 -14.89844 -14.25005 -14.07919 -13.95083 -13.82323 -13.51866 -13.42882 -13.32784 -13.19286 -12.89377 -12.78481 -12.45139 -12.42559 -12.23478 -12.11105 -11.53810 -10.97217 -10.51649 -10.44894 -10.22144 -10.08641 -10.01906 -9.55085 -8.48459 -5.98216 1.38527 1.43410 1.47808 1.52180 1.58167 1.93593 2.10411 2.28413 2.29546 2.76359 3.18324 3.19483 3.43359 3.83902 3.88225 4.00085 4.05933 4.19578 4.21965 4.26655 4.49180 4.52494 4.54562 4.62329 4.75978 4.87048 4.94742 5.16854 5.28505 5.40179 5.44635 5.69104 5.78523 5.85977 5.95638 6.17298 6.51134 6.91748 7.06704 7.16414 7.46060 7.55567 7.98040 8.68444 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.002963 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.431640 B = 9446.346721 C =10150.512946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.173 3.827 3 H 0.079 0.921 4 C -0.146 4.146 5 C 0.518 3.482 6 O -0.594 6.594 7 N -0.711 5.711 8 C 0.094 3.906 9 C 0.082 3.918 10 N -0.621 5.621 11 C 0.700 3.300 12 O -0.604 6.604 13 N -0.726 5.726 14 C 0.141 3.859 15 C 0.435 3.565 16 O -0.623 6.623 17 N -0.561 5.561 18 C -0.335 4.335 19 H 0.088 0.912 20 C -0.011 4.011 21 N -0.917 5.917 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.409 0.591 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.398 0.602 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 5.565 -14.561 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.097 0.903 4 C -0.187 4.187 5 C 0.305 3.695 6 O -0.476 6.476 7 N -0.362 5.362 8 C -0.030 4.030 9 C -0.041 4.041 10 N -0.359 5.359 11 C 0.402 3.598 12 O -0.485 6.485 13 N -0.387 5.387 14 C 0.013 3.987 15 C 0.222 3.778 16 O -0.511 6.511 17 N -0.196 5.196 18 C -0.464 4.464 19 H 0.106 0.894 20 C -0.212 4.212 21 N -0.558 5.558 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.193 1.193 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.249 0.751 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.232 0.768 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.535 5.816 -15.011 17.375 hybrid contribution 0.469 -0.328 0.975 1.130 sum 7.004 5.489 -14.036 16.619 Atomic orbital electron populations 1.22124 0.91710 1.03085 1.00994 1.20720 0.96286 0.94649 0.81425 0.90336 1.22404 0.92359 1.03427 1.00521 1.20817 0.88930 0.78843 0.80872 1.90741 1.85135 1.39345 1.32358 1.45901 1.10715 1.50062 1.29558 1.22341 1.03469 0.91946 0.85282 1.22285 0.79546 1.02825 0.99470 1.47082 1.06147 1.58088 1.24539 1.16091 0.85046 0.78504 0.80177 1.91009 1.17287 1.64729 1.75479 1.45140 1.11141 1.64680 1.17763 1.20571 0.90728 0.99913 0.87534 1.20442 0.87884 0.83727 0.85741 1.90454 1.15189 1.63529 1.81912 1.41846 1.09654 1.52175 1.15956 1.19730 0.93384 1.37280 0.95997 0.89430 1.26098 0.96208 0.97103 1.01747 1.69678 1.06127 1.45152 1.34797 0.84894 0.78061 0.77991 0.77225 1.19709 1.19894 1.19288 0.92719 0.92521 0.91397 0.86673 0.87905 0.75331 0.84685 0.89883 0.89156 0.88127 0.75112 0.88957 0.89192 0.76753 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 7.43 71.98 0.53 -2.19 16 2 C 0.17 3.35 3.19 44.99 0.14 3.49 16 3 H 0.08 1.49 7.95 -2.39 -0.02 1.47 16 4 C -0.15 -2.51 4.96 29.94 0.15 -2.36 16 5 C 0.52 10.17 7.11 87.99 0.63 10.79 16 6 O -0.59 -16.73 17.91 -3.03 -0.05 -16.79 16 7 N -0.71 -9.29 5.30 -462.75 -2.45 -11.74 16 8 C 0.09 0.96 6.49 86.38 0.56 1.52 16 9 C 0.08 1.18 6.18 86.53 0.54 1.72 16 10 N -0.62 -12.62 2.78 -817.50 -2.27 -14.90 16 11 C 0.70 19.24 8.04 179.05 1.44 20.68 16 12 O -0.60 -19.64 11.40 -3.99 -0.05 -19.69 16 13 N -0.73 -21.10 5.42 -482.27 -2.61 -23.71 16 14 C 0.14 4.73 6.16 85.63 0.53 5.26 16 15 C 0.43 18.76 7.85 87.66 0.69 19.44 16 16 O -0.62 -29.83 15.24 -3.04 -0.05 -29.87 16 17 N -0.56 -26.89 5.29 -306.98 -1.62 -28.51 16 18 C -0.33 -17.75 9.68 84.04 0.81 -16.94 16 19 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -47.67 13.05 21.66 0.28 -47.39 16 22 Si 0.99 40.56 29.55 68.60 2.03 42.59 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H 0.05 1.48 6.61 -2.39 -0.02 1.46 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.74 6.60 -2.39 -0.02 1.73 16 29 H 0.11 1.89 7.98 -2.39 -0.02 1.87 16 30 H 0.10 1.64 7.08 -2.39 -0.02 1.62 16 31 H 0.41 4.33 8.91 -92.71 -0.83 3.50 16 32 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.95 7.03 -2.38 -0.02 0.94 16 34 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.10 1.53 5.29 -2.39 -0.01 1.52 16 36 H 0.41 11.34 4.70 -92.71 -0.44 10.90 16 37 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.40 18.47 7.90 -92.71 -0.73 17.74 16 40 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -68.73 326.04 -1.19 -69.92 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.88 Total: 38.77 kcal Atomic # 6 Polarization: 34.84 SS G_CDS: 6.48 Total: 41.32 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -8.68 Total: -126.25 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -0.15 Total: -66.35 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.73 -1.19 -69.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346657401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.413 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds