Wall clock time and date at job start Tue Mar 31 2020 03:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00413 * 2 1 4 4 C 1.53000 * 109.47469 * 270.00355 * 3 2 1 5 5 H 1.09004 * 112.78110 * 284.18911 * 4 3 2 6 6 C 1.53502 * 113.48000 * 153.37740 * 4 3 2 7 7 C 1.53507 * 83.57878 * 219.20931 * 6 4 3 8 8 N 1.47476 * 113.47429 * 54.99295 * 4 3 2 9 9 C 1.46904 * 111.00204 * 253.47180 * 8 4 3 10 10 C 1.50700 * 109.47111 * 197.56518 * 9 8 4 11 11 O 1.21296 * 119.99833 * 354.92301 * 10 9 8 12 12 N 1.34775 * 119.99832 * 175.20256 * 10 9 8 13 13 C 1.37105 * 119.99894 * 179.72388 * 12 10 9 14 14 H 1.08000 * 119.99785 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00104 * 180.02562 * 13 12 10 16 16 N 1.31416 * 119.99602 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00006 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47382 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47172 * 119.99956 * 17 15 13 20 20 H 1.48507 * 109.47315 * 239.99769 * 17 15 13 21 21 C 1.34778 * 120.00221 * 180.02562 * 2 1 3 22 22 O 1.21348 * 120.00377 * 185.11359 * 21 2 1 23 23 C 1.49459 * 119.99495 * 5.11185 * 21 2 1 24 24 N 1.34773 * 119.99810 * 186.44094 * 23 21 2 25 25 O 1.21347 * 119.99831 * 6.43535 * 23 21 2 26 26 H 1.09000 * 109.47418 * 95.66260 * 1 2 3 27 27 H 1.08998 * 109.47577 * 215.66540 * 1 2 3 28 28 H 1.09004 * 109.47029 * 335.66388 * 1 2 3 29 29 H 1.09005 * 109.47322 * 150.00079 * 3 2 1 30 30 H 1.09001 * 109.46970 * 29.99992 * 3 2 1 31 31 H 1.08999 * 114.17287 * 105.56026 * 6 4 3 32 32 H 1.09004 * 114.34308 * 332.87266 * 6 4 3 33 33 H 1.09001 * 113.47515 * 271.26203 * 7 6 4 34 34 H 1.08996 * 113.47980 * 140.79130 * 7 6 4 35 35 H 1.08996 * 109.46742 * 77.56662 * 9 8 4 36 36 H 1.08999 * 109.47237 * 317.56091 * 9 8 4 37 37 H 0.96995 * 120.00342 * 359.72084 * 12 10 9 38 38 H 0.97003 * 119.99352 * 180.02562 * 16 15 13 39 39 H 0.97004 * 120.00214 * 359.97438 * 24 23 21 40 40 H 0.97001 * 120.00279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 3.2505 1.1440 -1.9226 6 6 2.6015 3.2301 -1.5994 7 6 1.7995 3.0022 -2.8883 8 7 1.2251 1.8006 -2.2550 9 6 1.1442 0.6888 -3.2118 10 6 0.1473 1.0259 -4.2905 11 8 -0.5052 2.0456 -4.2160 12 7 -0.0231 0.1915 -5.3351 13 6 -0.9341 0.4954 -6.3136 14 1 -1.5154 1.4032 -6.2471 15 6 -1.1103 -0.3650 -7.3903 16 7 -0.4032 -1.4698 -7.4710 17 14 -2.3520 0.0487 -8.7230 18 1 -3.0130 1.3387 -8.4006 19 1 -1.6559 0.1628 -10.0299 20 1 -3.3737 -1.0264 -8.7987 21 6 2.1389 -1.1672 -0.0005 22 8 3.3487 -1.1694 0.0931 23 6 1.3960 -2.4589 -0.1164 24 7 2.0534 -3.6283 0.0131 25 8 0.2009 -2.4547 -0.3271 26 1 -0.3634 -0.1014 -1.0226 27 1 -0.3634 -0.8349 0.5992 28 1 -0.3633 0.9364 0.4235 29 1 3.1500 1.1383 0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.6261 3.5635 -1.7643 32 1 2.0756 3.8136 -0.8437 33 1 2.4232 2.7805 -3.7543 34 1 1.0645 3.7824 -3.0861 35 1 0.8258 -0.2150 -2.6924 36 1 2.1236 0.5240 -3.6609 37 1 0.4987 -0.6239 -5.3947 38 1 -0.5260 -2.0703 -8.2228 39 1 3.0087 -3.6316 0.1812 40 1 1.5712 -4.4666 -0.0617 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488653473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:09 Heat of formation + Delta-G solvation = -82.025341 kcal Electronic energy + Delta-G solvation = -25097.702842 eV Core-core repulsion = 21334.256211 eV Total energy + Delta-G solvation = -3763.446631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03817 -41.22821 -39.69666 -39.24815 -36.84110 -35.98376 -34.55742 -33.38186 -32.19380 -30.17302 -27.85475 -27.56974 -25.94458 -25.39273 -23.63194 -21.20707 -21.04103 -20.51905 -19.96007 -18.94450 -18.31691 -17.81278 -17.52160 -17.14621 -17.10515 -16.53084 -16.30443 -16.19325 -15.62587 -15.60849 -15.14887 -14.90394 -14.68588 -14.12690 -14.01091 -13.69309 -13.58365 -13.45823 -12.99402 -12.89404 -12.69591 -12.47546 -12.41100 -12.33956 -12.13930 -11.96383 -11.65936 -11.50641 -10.88585 -10.55958 -10.41839 -10.07317 -9.95817 -9.61918 -8.50517 -6.00015 0.33500 1.33811 1.38979 1.44186 1.53931 1.97533 2.10228 2.25706 2.63470 2.83934 3.15238 3.25506 3.52686 3.57385 3.81025 4.09458 4.14284 4.20181 4.29291 4.35938 4.42938 4.45934 4.56561 4.71472 4.80510 4.87806 5.00945 5.09295 5.24698 5.27518 5.35805 5.39251 5.62478 5.86176 5.94002 6.04361 6.16843 6.53733 6.69712 7.03694 7.07450 7.48807 8.03614 8.67512 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.004565 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.165304 B = 6131.713173 C = 7405.878928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.571 5.571 3 C 0.132 3.868 4 C 0.004 3.996 5 H 0.073 0.927 6 C -0.108 4.108 7 C 0.002 3.998 8 N -0.448 5.448 9 C 0.031 3.969 10 C 0.443 3.557 11 O -0.611 6.611 12 N -0.574 5.574 13 C -0.332 4.332 14 H 0.081 0.919 15 C -0.014 4.014 16 N -0.923 5.923 17 Si 0.996 3.004 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.271 1.271 21 C 0.498 3.502 22 O -0.541 6.541 23 C 0.504 3.496 24 N -0.803 5.803 25 O -0.541 6.541 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.392 0.608 38 H 0.278 0.722 39 H 0.422 0.578 40 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 -0.282 17.218 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.302 5.302 3 C 0.010 3.990 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.145 4.145 7 C -0.127 4.127 8 N -0.171 5.171 9 C -0.101 4.101 10 C 0.230 3.770 11 O -0.497 6.497 12 N -0.211 5.211 13 C -0.462 4.462 14 H 0.099 0.901 15 C -0.214 4.214 16 N -0.564 5.564 17 Si 0.819 3.181 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.196 1.196 21 C 0.281 3.719 22 O -0.420 6.420 23 C 0.283 3.717 24 N -0.370 5.370 25 O -0.419 6.419 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.317 0.426 17.346 19.241 hybrid contribution 0.449 -1.156 -1.645 2.060 sum 8.765 -0.730 15.701 17.997 Atomic orbital electron populations 1.22043 0.77083 1.03698 1.02136 1.47706 1.08590 1.05405 1.68483 1.21837 0.98649 0.83647 0.94879 1.24007 0.91956 0.98554 0.96073 0.90856 1.23156 1.01586 0.93312 0.96495 1.23571 0.97315 0.94582 0.97241 1.68829 1.32017 1.02079 1.14134 1.22244 0.97149 0.97354 0.93350 1.20560 0.87151 0.85119 0.84203 1.90486 1.51520 1.28487 1.79185 1.41971 1.36862 1.21963 1.20337 1.19715 1.17512 1.07666 1.01266 0.90133 1.26103 0.99957 0.94894 1.00427 1.69697 1.41676 1.12118 1.32863 0.84829 0.77602 0.78333 0.77307 1.19622 1.19425 1.19573 1.20238 0.87353 0.85763 0.78593 1.90724 1.13740 1.87493 1.50008 1.20200 0.87019 0.86671 0.77794 1.43414 1.14707 1.07040 1.71811 1.90839 1.15545 1.87668 1.47830 0.94242 0.89796 0.89389 0.87901 0.87044 0.88040 0.86864 0.92889 0.91329 0.89497 0.92168 0.77450 0.91262 0.74611 0.74492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 8.75 127.77 1.12 3.49 16 2 N -0.57 -13.70 2.78 -848.34 -2.36 -16.06 16 3 C 0.13 2.61 5.64 86.38 0.49 3.09 16 4 C 0.00 0.11 3.37 42.18 0.14 0.25 16 5 H 0.07 1.85 7.64 -2.39 -0.02 1.83 16 6 C -0.11 -2.09 8.00 30.93 0.25 -1.85 16 7 C 0.00 0.06 6.37 83.57 0.53 0.59 16 8 N -0.45 -14.49 5.35 -906.80 -4.85 -19.35 16 9 C 0.03 1.19 5.27 85.56 0.45 1.64 16 10 C 0.44 22.20 7.49 87.66 0.66 22.86 16 11 O -0.61 -34.55 14.99 -3.08 -0.05 -34.60 16 12 N -0.57 -31.10 5.29 -306.98 -1.62 -32.72 16 13 C -0.33 -19.47 9.68 84.04 0.81 -18.65 16 14 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.92 -51.41 13.05 21.66 0.28 -51.12 16 17 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.50 12.64 7.73 87.27 0.67 13.31 16 22 O -0.54 -14.52 16.05 -3.24 -0.05 -14.58 16 23 C 0.50 12.42 7.97 87.27 0.70 13.11 16 24 N -0.80 -12.93 8.87 -174.50 -1.55 -14.48 16 25 O -0.54 -16.62 14.23 -3.24 -0.05 -16.67 16 26 H 0.04 1.29 6.68 -2.39 -0.02 1.28 16 27 H 0.08 2.12 5.98 -2.39 -0.01 2.11 16 28 H 0.09 1.89 7.83 -2.38 -0.02 1.87 16 29 H 0.10 1.83 7.36 -2.38 -0.02 1.81 16 30 H 0.11 1.75 7.59 -2.39 -0.02 1.73 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.82 7.94 -2.39 -0.02 1.81 16 33 H 0.05 1.71 7.83 -2.39 -0.02 1.69 16 34 H 0.07 2.41 7.98 -2.39 -0.02 2.39 16 35 H 0.09 3.35 6.89 -2.39 -0.02 3.33 16 36 H 0.06 2.16 7.56 -2.39 -0.02 2.14 16 37 H 0.39 20.62 7.90 -92.71 -0.73 19.88 16 38 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.42 5.28 8.32 -92.70 -0.77 4.50 16 40 H 0.42 5.18 8.93 -92.71 -0.83 4.35 16 Total: -1.00 -74.75 337.26 -3.15 -77.90 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -1.21 Total: 38.21 kcal Atomic # 6 Polarization: 31.24 SS G_CDS: 6.28 Total: 37.52 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -10.10 Total: -133.73 kcal Atomic # 8 Polarization: -65.70 SS G_CDS: -0.14 Total: -65.84 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.75 -3.15 -77.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488653473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.126 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds