Wall clock time and date at job start Tue Mar 31 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.48428 * 2 1 4 4 O 1.21279 * 120.00020 * 264.97665 * 3 2 1 5 5 N 1.34775 * 120.00032 * 84.97301 * 3 2 1 6 6 C 1.47028 * 125.64798 * 0.03070 * 5 3 2 7 7 C 1.54324 * 107.26799 * 181.02134 * 6 5 3 8 8 C 1.55157 * 102.94608 * 22.18988 * 7 6 5 9 9 O 1.42896 * 111.00362 * 82.57428 * 8 7 6 10 10 C 1.50694 * 111.00264 * 206.38668 * 8 7 6 11 11 H 1.08004 * 120.00235 * 24.82610 * 10 8 7 12 12 C 1.37879 * 120.00045 * 204.82550 * 10 8 7 13 13 N 1.31515 * 120.00404 * 173.52861 * 12 10 8 14 14 Si 1.86802 * 119.99703 * 353.52829 * 12 10 8 15 15 H 1.48495 * 109.47083 * 87.32346 * 14 12 10 16 16 H 1.48505 * 109.47007 * 207.32163 * 14 12 10 17 17 H 1.48501 * 109.46932 * 327.31778 * 14 12 10 18 18 C 1.47422 * 125.64848 * 179.71561 * 5 3 2 19 19 C 1.53095 * 109.47967 * 239.97352 * 2 1 3 20 20 C 1.53181 * 109.21343 * 182.36733 * 19 2 1 21 21 H 1.09001 * 109.54546 * 297.14974 * 20 19 2 22 22 N 1.46897 * 109.54234 * 176.88092 * 20 19 2 23 23 C 1.53312 * 108.96505 * 56.95662 * 20 19 2 24 24 C 1.53095 * 109.19397 * 303.05672 * 23 20 19 25 25 O 1.42900 * 109.41432 * 57.60930 * 24 23 20 26 26 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47086 * 300.02829 * 1 2 3 28 28 H 1.09008 * 109.46468 * 60.02032 * 1 2 3 29 29 H 1.09000 * 109.87535 * 300.43585 * 6 5 3 30 30 H 1.08997 * 109.88313 * 61.45006 * 6 5 3 31 31 H 1.09002 * 110.71770 * 140.55726 * 7 6 5 32 32 H 1.09000 * 110.71502 * 263.64540 * 7 6 5 33 33 H 0.96695 * 114.00426 * 56.20056 * 9 8 7 34 34 H 0.96999 * 120.00485 * 179.97438 * 13 12 10 35 35 H 1.09003 * 110.36752 * 274.74649 * 18 5 3 36 36 H 1.09002 * 110.36666 * 37.07298 * 18 5 3 37 37 H 1.08997 * 109.52490 * 302.30774 * 19 2 1 38 38 H 1.08996 * 109.52030 * 62.43245 * 19 2 1 39 39 H 1.00901 * 110.99991 * 180.02562 * 22 20 19 40 40 H 1.00899 * 110.99969 * 303.95506 * 22 20 19 41 41 H 1.08996 * 109.50915 * 183.13824 * 23 20 19 42 42 H 1.09000 * 109.50602 * 62.97001 * 23 20 19 43 43 H 1.08997 * 109.47979 * 297.62109 * 24 23 20 44 44 H 1.09004 * 109.48690 * 177.59814 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0327 1.4206 0.0000 4 8 2.3216 1.9616 -1.0463 5 7 2.1610 2.0901 1.1627 6 6 1.8488 1.5575 2.4971 7 6 2.1239 2.6836 3.5157 8 6 2.0358 3.9666 2.6477 9 8 0.6779 4.3784 2.4786 10 6 2.8642 5.0774 3.2400 11 1 3.7021 4.8438 3.8802 12 6 2.5526 6.3920 2.9645 13 7 3.1926 7.3624 3.5797 14 14 1.2212 6.7947 1.7176 15 1 -0.0995 6.8238 2.3957 16 1 1.4959 8.1223 1.1116 17 1 1.2092 5.7581 0.6543 18 6 2.6439 3.4753 1.3078 19 6 2.0406 -0.7222 -1.2496 20 6 3.5712 -0.7706 -1.2139 21 1 3.9689 0.2439 -1.2425 22 7 4.0660 -1.5272 -2.3718 23 6 4.0178 -1.4598 0.0807 24 6 3.4309 -0.7092 1.2789 25 8 2.0068 -0.6742 1.1663 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3632 0.5136 -0.8903 29 1 0.7999 1.2642 2.5429 30 1 2.4837 0.6977 2.7110 31 1 1.3625 2.6926 4.2957 32 1 3.1178 2.5761 3.9502 33 1 0.2046 4.5235 3.3091 34 1 2.9736 8.2872 3.3857 35 1 3.7329 3.4947 1.3530 36 1 2.2867 4.0901 0.4815 37 1 1.6444 -1.7374 -1.2710 38 1 1.7138 -0.1849 -2.1399 39 1 5.0740 -1.5731 -2.3697 40 1 3.6623 -2.4515 -2.3991 41 1 5.1060 -1.4495 0.1418 42 1 3.6616 -2.4900 0.0862 43 1 3.8194 0.3091 1.2957 44 1 3.7103 -1.2200 2.2004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576329595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:15 Heat of formation + Delta-G solvation = -120.454642 kcal Electronic energy + Delta-G solvation = -26832.518032 eV Core-core repulsion = 23170.945325 eV Total energy + Delta-G solvation = -3661.572707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01883 -38.61604 -37.36342 -35.69746 -34.63158 -32.98138 -32.38904 -30.27638 -30.17406 -28.56185 -27.52919 -25.51213 -23.83420 -23.41836 -21.87721 -21.02459 -19.83230 -18.66789 -17.52387 -17.40747 -16.39764 -16.16663 -15.54585 -15.45626 -15.07448 -14.86422 -14.48261 -14.33320 -14.13656 -13.93073 -13.46691 -13.05197 -12.86168 -12.60748 -12.45866 -12.40115 -12.10863 -11.98041 -11.90626 -11.71987 -11.48317 -11.38040 -11.14444 -10.80599 -10.70103 -10.59432 -10.30822 -10.25079 -10.08362 -9.28219 -9.12861 -8.83749 -8.60996 -8.52721 -8.09218 -6.22206 -4.35085 2.82437 3.28700 3.45869 3.54469 3.62445 3.73357 4.20377 4.49455 4.53126 4.59051 4.67621 4.76117 4.98359 5.03190 5.09813 5.13257 5.29736 5.30936 5.35047 5.48815 5.51745 5.60089 5.65910 5.70148 5.71678 5.82402 5.98480 6.03841 6.09403 6.14072 6.18362 6.49483 6.55510 6.61015 6.71559 6.91729 6.95368 7.00288 7.23907 7.44213 7.97663 8.10181 8.47118 8.60286 8.78747 9.39861 10.86321 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.004888 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.237500 B = 5726.484220 C = 5811.714400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.107 3.893 3 C 0.502 3.498 4 O -0.542 6.542 5 N -0.602 5.602 6 C 0.105 3.895 7 C -0.152 4.152 8 C 0.220 3.780 9 O -0.558 6.558 10 C -0.553 4.553 11 H 0.082 0.918 12 C 0.076 3.924 13 N -0.886 5.886 14 Si 0.947 3.053 15 H -0.292 1.292 16 H -0.325 1.325 17 H -0.269 1.269 18 C 0.111 3.889 19 C -0.118 4.118 20 C 0.085 3.915 21 H 0.092 0.908 22 N -0.838 5.838 23 C -0.189 4.189 24 C 0.053 3.947 25 O -0.361 6.361 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.370 0.630 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.341 0.659 40 H 0.336 0.664 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -19.299 -3.844 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 C 0.289 3.711 4 O -0.420 6.420 5 N -0.334 5.334 6 C -0.018 4.018 7 C -0.190 4.190 8 C 0.180 3.820 9 O -0.366 6.366 10 C -0.590 4.590 11 H 0.100 0.900 12 C -0.129 4.129 13 N -0.521 5.521 14 Si 0.782 3.218 15 H -0.220 1.220 16 H -0.256 1.256 17 H -0.195 1.195 18 C -0.011 4.011 19 C -0.156 4.156 20 C -0.026 4.026 21 H 0.110 0.890 22 N -0.366 5.366 23 C -0.229 4.229 24 C -0.024 4.024 25 O -0.280 6.280 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.218 0.782 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.217 -18.429 -5.371 19.324 hybrid contribution -0.075 -0.218 0.714 0.751 sum -2.291 -18.647 -4.657 19.356 Atomic orbital electron populations 1.21726 0.90324 1.03447 1.03726 1.21737 0.96562 0.88475 0.86836 1.20762 0.78874 0.88408 0.83087 1.90697 1.50846 1.69713 1.30738 1.48739 1.63205 1.15509 1.05974 1.22239 1.00449 0.96962 0.82171 1.23330 1.02484 0.95827 0.97393 1.20237 0.80167 0.91440 0.90183 1.86143 1.26457 1.88353 1.35625 1.21152 1.16315 0.89465 1.32094 0.90030 1.25142 0.96506 0.96034 0.95266 1.69958 1.41499 0.99958 1.40664 0.85710 0.80093 0.74447 0.81538 1.21956 1.25619 1.19485 1.23003 0.98493 0.79705 0.99868 1.21969 0.95004 1.00824 0.97809 1.21612 0.95229 0.98670 0.87133 0.89038 1.58849 1.12351 1.21598 1.43794 1.23111 1.01369 1.00845 0.97571 1.22645 0.81075 1.00507 0.98187 1.88011 1.21065 1.76753 1.42153 0.90741 0.90986 0.90380 0.92049 0.91160 0.90815 0.90381 0.78172 0.92347 0.90388 0.90564 0.90747 0.88998 0.84644 0.85144 0.90950 0.91153 0.92059 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.83 37.16 0.33 -1.32 16 2 C 0.11 1.49 0.81 -91.72 -0.07 1.41 16 3 C 0.50 9.08 4.88 -10.99 -0.05 9.02 16 4 O -0.54 -11.62 15.38 5.56 0.09 -11.54 16 5 N -0.60 -11.15 2.77 -170.38 -0.47 -11.62 16 6 C 0.10 1.65 5.33 -3.06 -0.02 1.63 16 7 C -0.15 -2.64 6.11 -24.90 -0.15 -2.80 16 8 C 0.22 4.78 0.70 -89.51 -0.06 4.72 16 9 O -0.56 -12.03 8.52 -35.23 -0.30 -12.33 16 10 C -0.55 -14.41 8.89 -34.44 -0.31 -14.72 16 11 H 0.08 2.28 8.00 -52.48 -0.42 1.86 16 12 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 13 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 14 Si 0.95 23.89 24.92 -169.99 -4.24 19.66 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 17 H -0.27 -6.98 5.42 56.52 0.31 -6.67 16 18 C 0.11 2.42 5.90 -2.41 -0.01 2.40 16 19 C -0.12 -1.48 4.12 -26.59 -0.11 -1.59 16 20 C 0.09 1.04 3.07 -67.46 -0.21 0.83 16 21 H 0.09 1.43 6.72 -51.93 -0.35 1.08 16 22 N -0.84 -8.54 9.26 -4.45 -0.04 -8.58 16 23 C -0.19 -1.91 5.72 -26.52 -0.15 -2.07 16 24 C 0.05 0.62 4.91 37.21 0.18 0.80 16 25 O -0.36 -4.64 8.10 -35.23 -0.29 -4.93 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.92 7.22 -51.93 -0.38 0.54 16 28 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.06 0.92 7.22 -51.93 -0.38 0.55 16 30 H 0.07 0.98 4.89 -51.93 -0.25 0.73 16 31 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 32 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 33 H 0.37 6.82 8.99 45.56 0.41 7.23 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 1.70 8.04 -51.93 -0.42 1.29 16 36 H 0.08 1.88 6.50 -51.93 -0.34 1.54 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.31 7.79 -51.93 -0.40 0.91 16 39 H 0.34 2.96 9.04 -39.29 -0.36 2.60 16 40 H 0.34 2.78 8.99 -39.29 -0.35 2.43 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.84 6.02 -51.93 -0.31 0.53 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -32.15 329.95 -6.38 -38.53 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.15 Total: 10.83 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.73 Total: 0.34 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.26 Total: -45.54 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.50 Total: -28.80 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.24 Total: 19.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.15 -6.38 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576329595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.923 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds