Wall clock time and date at job start Tue Mar 31 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.48428 * 2 1 4 4 O 1.21279 * 120.00020 * 264.97665 * 3 2 1 5 5 N 1.34775 * 120.00032 * 84.97301 * 3 2 1 6 6 C 1.47028 * 125.64798 * 0.03070 * 5 3 2 7 7 C 1.54324 * 107.26799 * 181.02134 * 6 5 3 8 8 C 1.55157 * 102.94608 * 22.18988 * 7 6 5 9 9 O 1.42896 * 111.00362 * 82.57428 * 8 7 6 10 10 C 1.50694 * 111.00264 * 206.38668 * 8 7 6 11 11 H 1.08004 * 120.00235 * 24.82610 * 10 8 7 12 12 C 1.37879 * 120.00045 * 204.82550 * 10 8 7 13 13 N 1.31515 * 120.00404 * 173.52861 * 12 10 8 14 14 Si 1.86802 * 119.99703 * 353.52829 * 12 10 8 15 15 H 1.48495 * 109.47083 * 87.32346 * 14 12 10 16 16 H 1.48505 * 109.47007 * 207.32163 * 14 12 10 17 17 H 1.48501 * 109.46932 * 327.31778 * 14 12 10 18 18 C 1.47422 * 125.64848 * 179.71561 * 5 3 2 19 19 C 1.53095 * 109.47967 * 239.97352 * 2 1 3 20 20 C 1.53181 * 109.21343 * 182.36733 * 19 2 1 21 21 H 1.09001 * 109.54546 * 297.14974 * 20 19 2 22 22 N 1.46897 * 109.54234 * 176.88092 * 20 19 2 23 23 C 1.53312 * 108.96505 * 56.95662 * 20 19 2 24 24 C 1.53095 * 109.19397 * 303.05672 * 23 20 19 25 25 O 1.42900 * 109.41432 * 57.60930 * 24 23 20 26 26 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47086 * 300.02829 * 1 2 3 28 28 H 1.09008 * 109.46468 * 60.02032 * 1 2 3 29 29 H 1.09000 * 109.87535 * 300.43585 * 6 5 3 30 30 H 1.08997 * 109.88313 * 61.45006 * 6 5 3 31 31 H 1.09002 * 110.71770 * 140.55726 * 7 6 5 32 32 H 1.09000 * 110.71502 * 263.64540 * 7 6 5 33 33 H 0.96695 * 114.00426 * 56.20056 * 9 8 7 34 34 H 0.96999 * 120.00485 * 179.97438 * 13 12 10 35 35 H 1.09003 * 110.36752 * 274.74649 * 18 5 3 36 36 H 1.09002 * 110.36666 * 37.07298 * 18 5 3 37 37 H 1.08997 * 109.52490 * 302.30774 * 19 2 1 38 38 H 1.08996 * 109.52030 * 62.43245 * 19 2 1 39 39 H 1.00901 * 110.99991 * 180.02562 * 22 20 19 40 40 H 1.00899 * 110.99969 * 303.95506 * 22 20 19 41 41 H 1.08996 * 109.50915 * 183.13824 * 23 20 19 42 42 H 1.09000 * 109.50602 * 62.97001 * 23 20 19 43 43 H 1.08997 * 109.47979 * 297.62109 * 24 23 20 44 44 H 1.09004 * 109.48690 * 177.59814 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0327 1.4206 0.0000 4 8 2.3216 1.9616 -1.0463 5 7 2.1610 2.0901 1.1627 6 6 1.8488 1.5575 2.4971 7 6 2.1239 2.6836 3.5157 8 6 2.0358 3.9666 2.6477 9 8 0.6779 4.3784 2.4786 10 6 2.8642 5.0774 3.2400 11 1 3.7021 4.8438 3.8802 12 6 2.5526 6.3920 2.9645 13 7 3.1926 7.3624 3.5797 14 14 1.2212 6.7947 1.7176 15 1 -0.0995 6.8238 2.3957 16 1 1.4959 8.1223 1.1116 17 1 1.2092 5.7581 0.6543 18 6 2.6439 3.4753 1.3078 19 6 2.0406 -0.7222 -1.2496 20 6 3.5712 -0.7706 -1.2139 21 1 3.9689 0.2439 -1.2425 22 7 4.0660 -1.5272 -2.3718 23 6 4.0178 -1.4598 0.0807 24 6 3.4309 -0.7092 1.2789 25 8 2.0068 -0.6742 1.1663 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3632 0.5136 -0.8903 29 1 0.7999 1.2642 2.5429 30 1 2.4837 0.6977 2.7110 31 1 1.3625 2.6926 4.2957 32 1 3.1178 2.5761 3.9502 33 1 0.2046 4.5235 3.3091 34 1 2.9736 8.2872 3.3857 35 1 3.7329 3.4947 1.3530 36 1 2.2867 4.0901 0.4815 37 1 1.6444 -1.7374 -1.2710 38 1 1.7138 -0.1849 -2.1399 39 1 5.0740 -1.5731 -2.3697 40 1 3.6623 -2.4515 -2.3991 41 1 5.1060 -1.4495 0.1418 42 1 3.6616 -2.4900 0.0862 43 1 3.8194 0.3091 1.2957 44 1 3.7103 -1.2200 2.2004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576329595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:15 Heat of formation + Delta-G solvation = -147.918557 kcal Electronic energy + Delta-G solvation = -26833.708956 eV Core-core repulsion = 23170.945325 eV Total energy + Delta-G solvation = -3662.763632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.23090 -40.04902 -38.83048 -36.81251 -36.07842 -34.49926 -34.00956 -31.83932 -31.04894 -30.18235 -28.49712 -27.33177 -24.95410 -24.69421 -23.13534 -22.09851 -21.54325 -19.97661 -19.43468 -18.69476 -17.38896 -17.26792 -17.11218 -16.82406 -16.70915 -16.36738 -15.72734 -15.69892 -15.41973 -14.95643 -14.80195 -14.39403 -14.19852 -14.17059 -13.98168 -13.70632 -13.40496 -13.33081 -13.17398 -13.01639 -12.96105 -12.60713 -12.36055 -12.30126 -12.14881 -12.05461 -11.97047 -11.71461 -11.30018 -11.16091 -10.72873 -10.44524 -10.32183 -9.64483 -9.61424 -8.39873 -6.51701 1.40031 1.43159 1.48008 1.67751 1.92525 2.38666 2.57760 2.93183 3.25139 3.35501 3.48349 3.70303 3.71963 3.80330 3.87192 4.07185 4.19378 4.25371 4.26453 4.36529 4.45578 4.48849 4.59730 4.66999 4.69384 4.74851 4.80095 4.84743 4.92242 4.94245 5.01195 5.12905 5.16312 5.19478 5.23075 5.30204 5.51323 5.92960 6.03840 6.15248 6.53762 6.57740 6.58055 6.96902 7.04402 7.28487 8.72708 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.004888 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.237500 B = 5726.484220 C = 5811.714400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.116 3.884 3 C 0.496 3.504 4 O -0.585 6.585 5 N -0.603 5.603 6 C 0.110 3.890 7 C -0.141 4.141 8 C 0.217 3.783 9 O -0.564 6.564 10 C -0.544 4.544 11 H 0.056 0.944 12 C 0.033 3.967 13 N -0.930 5.930 14 Si 0.999 3.001 15 H -0.273 1.273 16 H -0.338 1.338 17 H -0.284 1.284 18 C 0.115 3.885 19 C -0.114 4.114 20 C 0.087 3.913 21 H 0.048 0.952 22 N -0.844 5.844 23 C -0.179 4.179 24 C 0.045 3.955 25 O -0.355 6.355 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.386 0.614 34 H 0.267 0.733 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.349 0.651 40 H 0.351 0.649 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.034 0.966 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -22.895 -3.230 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.073 3.927 3 C 0.285 3.715 4 O -0.466 6.466 5 N -0.335 5.335 6 C -0.012 4.012 7 C -0.179 4.179 8 C 0.176 3.824 9 O -0.374 6.374 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.168 4.168 13 N -0.568 5.568 14 Si 0.835 3.165 15 H -0.199 1.199 16 H -0.271 1.271 17 H -0.211 1.211 18 C -0.008 4.008 19 C -0.152 4.152 20 C -0.025 4.025 21 H 0.066 0.934 22 N -0.374 5.374 23 C -0.218 4.218 24 C -0.032 4.032 25 O -0.273 6.273 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.053 0.947 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.613 -22.068 -4.722 22.855 hybrid contribution 0.446 0.863 0.503 1.094 sum -3.167 -21.205 -4.219 21.852 Atomic orbital electron populations 1.21781 0.88713 1.05387 1.03290 1.21706 0.97600 0.85393 0.88006 1.21744 0.77698 0.90042 0.82045 1.90670 1.52498 1.71103 1.32312 1.48783 1.63173 1.14063 1.07507 1.22385 1.02057 0.96791 0.79938 1.23236 1.03569 0.93437 0.97706 1.20085 0.79609 0.91948 0.90731 1.86080 1.25982 1.88319 1.36982 1.21439 1.15614 0.90567 1.30539 0.92619 1.25729 0.98203 0.96337 0.96500 1.70050 1.43616 1.00339 1.42759 0.84849 0.79250 0.72916 0.79496 1.19926 1.27067 1.21112 1.22610 0.97850 0.81783 0.98606 1.21954 0.95376 1.01780 0.96123 1.21424 0.94910 0.97107 0.89108 0.93413 1.58750 1.13178 1.22432 1.43058 1.23024 1.02067 1.01323 0.95390 1.22842 0.80381 0.99659 1.00273 1.88020 1.21821 1.75970 1.41513 0.87567 0.91343 0.90988 0.90251 0.88705 0.88204 0.90372 0.76419 0.92374 0.91548 0.94164 0.87728 0.91251 0.83698 0.83517 0.89854 0.88888 0.94725 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.83 71.98 0.64 -2.25 16 2 C 0.12 2.98 0.81 -11.51 -0.01 2.97 16 3 C 0.50 17.84 4.88 87.66 0.43 18.27 16 4 O -0.58 -26.03 15.38 -3.03 -0.05 -26.08 16 5 N -0.60 -22.01 2.77 -811.35 -2.25 -24.26 16 6 C 0.11 3.16 5.33 86.73 0.46 3.62 16 7 C -0.14 -4.59 6.11 31.78 0.19 -4.40 16 8 C 0.22 9.31 0.70 -10.07 -0.01 9.31 16 9 O -0.56 -23.53 8.52 -148.98 -1.27 -24.80 16 10 C -0.54 -28.75 8.89 25.60 0.23 -28.52 16 11 H 0.06 3.19 8.00 -2.91 -0.02 3.17 16 12 C 0.03 1.87 5.46 84.66 0.46 2.33 16 13 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 14 Si 1.00 50.27 24.92 68.60 1.71 51.98 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.34 -17.59 7.11 99.48 0.71 -16.88 16 17 H -0.28 -14.92 5.42 99.48 0.54 -14.38 16 18 C 0.11 5.12 5.90 86.93 0.51 5.63 16 19 C -0.11 -2.65 4.12 30.69 0.13 -2.52 16 20 C 0.09 1.99 3.07 45.08 0.14 2.13 16 21 H 0.05 1.53 6.72 -2.39 -0.02 1.51 16 22 N -0.84 -15.70 9.26 -168.00 -1.56 -17.26 16 23 C -0.18 -3.06 5.72 30.73 0.18 -2.88 16 24 C 0.05 0.91 4.91 72.01 0.35 1.26 16 25 O -0.35 -7.80 8.10 -148.98 -1.21 -9.01 16 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.52 7.22 -2.39 -0.02 1.50 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 2.07 7.22 -2.39 -0.02 2.05 16 30 H 0.10 2.31 4.89 -2.39 -0.01 2.30 16 31 H 0.10 2.75 8.12 -2.39 -0.02 2.73 16 32 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 33 H 0.39 13.27 8.99 -74.06 -0.67 12.61 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.07 3.04 8.04 -2.39 -0.02 3.02 16 36 H 0.04 2.07 6.50 -2.39 -0.02 2.05 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.94 7.79 -2.39 -0.02 1.92 16 39 H 0.35 5.49 9.04 -89.69 -0.81 4.68 16 40 H 0.35 4.77 8.99 -89.69 -0.81 3.97 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 0.89 6.02 -2.39 -0.01 0.88 16 44 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -72.78 329.95 -2.02 -74.80 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -1.41 Total: 25.56 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 3.70 Total: 4.94 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.50 Total: -97.41 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -2.52 Total: -59.88 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.71 Total: 51.98 kcal Total: -72.78 -2.02 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576329595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.115 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds