Wall clock time and date at job start Tue Mar 31 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00409 * 2 1 4 4 C 1.50710 * 109.47073 * 270.00506 * 3 2 1 5 5 O 1.21295 * 119.99748 * 5.53961 * 4 3 2 6 6 N 1.34778 * 119.99864 * 185.53993 * 4 3 2 7 7 C 1.37092 * 120.00174 * 4.98590 * 6 4 3 8 8 H 1.07997 * 120.00102 * 324.63238 * 7 6 4 9 9 C 1.38947 * 120.00040 * 144.62441 * 7 6 4 10 10 N 1.31411 * 120.00269 * 338.12454 * 9 7 6 11 11 Si 1.86807 * 119.99877 * 158.12578 * 9 7 6 12 12 H 1.48500 * 109.47149 * 60.00349 * 11 9 7 13 13 H 1.48502 * 109.46742 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47123 * 300.00068 * 11 9 7 15 15 C 1.46501 * 119.99759 * 184.98219 * 6 4 3 16 16 C 1.52995 * 109.46955 * 90.00221 * 15 6 4 17 17 C 1.50700 * 109.47098 * 179.97438 * 16 15 6 18 18 O 1.20824 * 119.99889 * 0.02562 * 17 16 15 19 19 O 1.34234 * 120.00120 * 179.97438 * 17 16 15 20 20 C 1.34784 * 120.00003 * 180.02562 * 2 1 3 21 21 O 1.21279 * 120.00023 * 179.97438 * 20 2 1 22 22 C 1.50700 * 119.99693 * 0.02562 * 20 2 1 23 23 C 1.52997 * 117.49474 * 248.62091 * 22 20 2 24 24 C 1.53000 * 117.49594 * 179.97438 * 22 20 2 25 25 H 1.09000 * 109.47110 * 270.00071 * 1 2 3 26 26 H 1.09005 * 109.47330 * 29.99923 * 1 2 3 27 27 H 1.08994 * 109.47154 * 150.00036 * 1 2 3 28 28 H 1.09002 * 109.46902 * 29.99972 * 3 2 1 29 29 H 1.08997 * 109.47712 * 150.00348 * 3 2 1 30 30 H 0.97000 * 120.00374 * 183.81262 * 10 9 7 31 31 H 1.09002 * 109.46930 * 210.00019 * 15 6 4 32 32 H 1.08996 * 109.47204 * 329.99906 * 15 6 4 33 33 H 1.09001 * 109.47035 * 300.00217 * 16 15 6 34 34 H 1.09003 * 109.47170 * 59.99550 * 16 15 6 35 35 H 0.96699 * 117.00177 * 180.02562 * 19 17 16 36 36 H 1.08997 * 115.55517 * 34.32430 * 22 20 2 37 37 H 1.09005 * 117.50313 * 359.97438 * 23 22 20 38 38 H 1.09001 * 117.50180 * 145.02102 * 23 22 20 39 39 H 1.08999 * 117.49955 * 214.97181 * 24 22 20 40 40 H 1.09001 * 117.50162 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 8 1.9689 1.0759 -2.3412 6 7 3.2062 2.7905 -1.6690 7 6 3.8321 3.4400 -0.6366 8 1 3.3505 3.5115 0.3274 9 6 5.0861 4.0061 -0.8304 10 7 5.8553 3.5806 -1.8072 11 14 5.6786 5.3722 0.2976 12 1 5.7217 4.8755 1.6964 13 1 7.0381 5.8022 -0.1176 14 1 4.7470 6.5253 0.2102 15 6 3.3610 3.2776 -3.0420 16 6 2.2582 4.2922 -3.3504 17 6 2.4178 4.7937 -4.7625 18 8 3.3205 4.3815 -5.4516 19 8 1.5563 5.6977 -5.2551 20 6 2.1389 -1.1673 -0.0005 21 8 3.3517 -1.1673 -0.0010 22 6 1.3853 -2.4723 -0.0017 23 6 1.4601 -3.3322 1.2615 24 6 2.2074 -3.7627 -0.0028 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1383 0.5137 30 1 6.7519 3.9366 -1.9088 31 1 4.3348 3.7551 -3.1505 32 1 3.2880 2.4396 -3.7352 33 1 1.2844 3.8147 -3.2418 34 1 2.3312 5.1302 -2.6571 35 1 1.6988 5.9891 -6.1660 36 1 0.4471 -2.4730 -0.5565 37 1 2.0546 -2.9543 2.0933 38 1 0.5709 -3.8989 1.5381 39 1 1.8097 -4.6124 -0.5578 40 1 3.2933 -3.6677 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606075105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:50 Heat of formation + Delta-G solvation = -122.447699 kcal Electronic energy + Delta-G solvation = -24774.260182 eV Core-core repulsion = 20976.767955 eV Total energy + Delta-G solvation = -3797.492227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.92420 -39.74722 -38.37400 -36.13097 -35.77250 -35.16711 -34.57276 -31.95545 -30.84060 -28.34868 -26.27310 -25.22937 -24.24973 -22.79379 -22.36796 -20.53921 -19.27272 -18.61732 -17.79369 -17.30704 -16.88486 -16.33505 -15.99069 -15.61001 -15.38037 -15.03834 -14.53796 -14.27060 -14.18587 -13.80798 -13.25425 -12.81055 -12.76603 -12.67397 -12.47040 -12.38795 -12.00577 -11.77100 -11.49521 -11.32303 -11.20768 -11.13514 -10.91916 -10.73304 -10.51936 -10.46062 -10.37613 -10.14631 -10.06472 -9.40878 -9.26737 -8.88737 -8.01358 -7.59279 -6.40397 -4.11930 2.66002 2.83885 3.09566 3.18823 3.20303 3.31708 3.42031 3.82145 3.97345 4.09974 4.69278 4.83591 4.85522 4.92699 4.95966 5.16142 5.41957 5.56153 5.57622 5.62251 5.71870 5.77745 5.86239 5.89104 5.99470 6.01746 6.19221 6.20846 6.33011 6.36013 6.77610 6.82471 6.91264 7.29536 7.46042 7.77542 7.85351 8.26893 8.31021 8.61684 9.01392 9.42197 9.85157 10.60866 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.004823 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.235994 B = 5803.999259 C = 7085.407428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.594 5.594 3 C 0.113 3.887 4 C 0.459 3.541 5 O -0.596 6.596 6 N -0.436 5.436 7 C -0.356 4.356 8 H 0.093 0.907 9 C 0.047 3.953 10 N -0.849 5.849 11 Si 0.915 3.085 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.123 3.877 16 C -0.122 4.122 17 C 0.482 3.518 18 O -0.513 6.513 19 O -0.525 6.525 20 C 0.544 3.456 21 O -0.534 6.534 22 C -0.188 4.188 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.274 0.726 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 -3.012 4.027 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.326 5.326 3 C -0.012 4.012 4 C 0.247 3.753 5 O -0.481 6.481 6 N -0.155 5.155 7 C -0.483 4.483 8 H 0.110 0.890 9 C -0.161 4.161 10 N -0.484 5.484 11 Si 0.741 3.259 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.197 1.197 15 C -0.002 4.002 16 C -0.161 4.161 17 C 0.324 3.676 18 O -0.400 6.400 19 O -0.337 6.337 20 C 0.331 3.669 21 O -0.410 6.410 22 C -0.209 4.209 23 C -0.192 4.192 24 C -0.188 4.188 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.259 0.741 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.430 -3.476 3.680 11.593 hybrid contribution 0.331 1.123 -0.206 1.189 sum -10.099 -2.353 3.474 10.935 Atomic orbital electron populations 1.21710 0.79767 1.03295 1.00768 1.47329 1.06719 1.05562 1.72971 1.21180 0.99010 0.84383 0.96617 1.20814 0.82994 0.80663 0.90807 1.90529 1.56192 1.55202 1.46204 1.43352 1.42464 1.23302 1.06388 1.19344 1.00490 1.35370 0.93111 0.88973 1.25400 0.95265 0.98262 0.97158 1.69864 1.07850 1.39299 1.31366 0.86192 0.78000 0.81339 0.80345 1.19581 1.20848 1.19694 1.21210 0.98834 0.95806 0.84313 1.21844 1.03747 1.02028 0.88525 1.23787 0.78129 0.75127 0.90526 1.90709 1.32639 1.56025 1.60639 1.84588 1.56038 1.57473 1.35592 1.19527 0.87314 0.84248 0.75775 1.90718 1.13815 1.87041 1.49449 1.22224 1.02620 0.91080 1.04988 1.22905 1.02981 1.01792 0.91535 1.22940 1.00264 0.95525 1.00075 0.92968 0.91129 0.91328 0.88890 0.87112 0.91591 0.86367 0.91630 0.88775 0.87686 0.74137 0.85922 0.88374 0.88105 0.88184 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.27 59.84 0.61 1.74 16 2 N -0.59 -10.57 2.37 -182.95 -0.43 -11.01 16 3 C 0.11 2.27 4.48 -5.19 -0.02 2.25 16 4 C 0.46 11.08 7.69 -10.98 -0.08 11.00 16 5 O -0.60 -15.71 16.00 5.54 0.09 -15.62 16 6 N -0.44 -10.78 2.54 -114.81 -0.29 -11.07 16 7 C -0.36 -8.69 8.57 -14.94 -0.13 -8.82 16 8 H 0.09 2.07 7.18 -52.49 -0.38 1.69 16 9 C 0.05 1.17 4.97 -17.47 -0.09 1.08 16 10 N -0.85 -22.89 11.33 55.50 0.63 -22.26 16 11 Si 0.92 19.02 29.61 -169.99 -5.03 13.99 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 15 C 0.12 2.98 4.33 -4.04 -0.02 2.96 16 16 C -0.12 -2.39 6.13 -27.89 -0.17 -2.57 16 17 C 0.48 8.91 8.33 36.01 0.30 9.21 16 18 O -0.51 -11.13 16.74 -18.75 -0.31 -11.45 16 19 O -0.53 -7.48 13.42 -39.27 -0.53 -8.01 16 20 C 0.54 10.31 7.46 -10.98 -0.08 10.22 16 21 O -0.53 -12.54 15.84 5.56 0.09 -12.46 16 22 C -0.19 -2.60 5.29 -91.77 -0.49 -3.08 16 23 C -0.15 -1.69 10.24 -26.71 -0.27 -1.96 16 24 C -0.15 -1.88 10.05 -26.70 -0.27 -2.15 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.07 0.77 5.99 -51.93 -0.31 0.46 16 28 H 0.09 1.56 7.96 -51.93 -0.41 1.14 16 29 H 0.11 2.44 7.14 -51.93 -0.37 2.07 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.12 3.14 5.33 -51.93 -0.28 2.86 16 32 H 0.07 1.74 7.32 -51.93 -0.38 1.36 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.40 3.78 9.10 45.56 0.41 4.20 16 36 H 0.12 1.44 6.44 -51.93 -0.33 1.11 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -34.88 346.32 -5.82 -40.70 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.54 Total: 12.07 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: -0.71 Total: 19.89 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.10 Total: -44.34 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -0.66 Total: -47.53 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.88 -5.82 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606075105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.748 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds