Wall clock time and date at job start Tue Mar 31 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00409 * 2 1 4 4 C 1.50710 * 109.47073 * 270.00506 * 3 2 1 5 5 O 1.21295 * 119.99748 * 5.53961 * 4 3 2 6 6 N 1.34778 * 119.99864 * 185.53993 * 4 3 2 7 7 C 1.37092 * 120.00174 * 4.98590 * 6 4 3 8 8 H 1.07997 * 120.00102 * 324.63238 * 7 6 4 9 9 C 1.38947 * 120.00040 * 144.62441 * 7 6 4 10 10 N 1.31411 * 120.00269 * 338.12454 * 9 7 6 11 11 Si 1.86807 * 119.99877 * 158.12578 * 9 7 6 12 12 H 1.48500 * 109.47149 * 60.00349 * 11 9 7 13 13 H 1.48502 * 109.46742 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47123 * 300.00068 * 11 9 7 15 15 C 1.46501 * 119.99759 * 184.98219 * 6 4 3 16 16 C 1.52995 * 109.46955 * 90.00221 * 15 6 4 17 17 C 1.50700 * 109.47098 * 179.97438 * 16 15 6 18 18 O 1.20824 * 119.99889 * 0.02562 * 17 16 15 19 19 O 1.34234 * 120.00120 * 179.97438 * 17 16 15 20 20 C 1.34784 * 120.00003 * 180.02562 * 2 1 3 21 21 O 1.21279 * 120.00023 * 179.97438 * 20 2 1 22 22 C 1.50700 * 119.99693 * 0.02562 * 20 2 1 23 23 C 1.52997 * 117.49474 * 248.62091 * 22 20 2 24 24 C 1.53000 * 117.49594 * 179.97438 * 22 20 2 25 25 H 1.09000 * 109.47110 * 270.00071 * 1 2 3 26 26 H 1.09005 * 109.47330 * 29.99923 * 1 2 3 27 27 H 1.08994 * 109.47154 * 150.00036 * 1 2 3 28 28 H 1.09002 * 109.46902 * 29.99972 * 3 2 1 29 29 H 1.08997 * 109.47712 * 150.00348 * 3 2 1 30 30 H 0.97000 * 120.00374 * 183.81262 * 10 9 7 31 31 H 1.09002 * 109.46930 * 210.00019 * 15 6 4 32 32 H 1.08996 * 109.47204 * 329.99906 * 15 6 4 33 33 H 1.09001 * 109.47035 * 300.00217 * 16 15 6 34 34 H 1.09003 * 109.47170 * 59.99550 * 16 15 6 35 35 H 0.96699 * 117.00177 * 180.02562 * 19 17 16 36 36 H 1.08997 * 115.55517 * 34.32430 * 22 20 2 37 37 H 1.09005 * 117.50313 * 359.97438 * 23 22 20 38 38 H 1.09001 * 117.50180 * 145.02102 * 23 22 20 39 39 H 1.08999 * 117.49955 * 214.97181 * 24 22 20 40 40 H 1.09001 * 117.50162 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 8 1.9689 1.0759 -2.3412 6 7 3.2062 2.7905 -1.6690 7 6 3.8321 3.4400 -0.6366 8 1 3.3505 3.5115 0.3274 9 6 5.0861 4.0061 -0.8304 10 7 5.8553 3.5806 -1.8072 11 14 5.6786 5.3722 0.2976 12 1 5.7217 4.8755 1.6964 13 1 7.0381 5.8022 -0.1176 14 1 4.7470 6.5253 0.2102 15 6 3.3610 3.2776 -3.0420 16 6 2.2582 4.2922 -3.3504 17 6 2.4178 4.7937 -4.7625 18 8 3.3205 4.3815 -5.4516 19 8 1.5563 5.6977 -5.2551 20 6 2.1389 -1.1673 -0.0005 21 8 3.3517 -1.1673 -0.0010 22 6 1.3853 -2.4723 -0.0017 23 6 1.4601 -3.3322 1.2615 24 6 2.2074 -3.7627 -0.0028 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1383 0.5137 30 1 6.7519 3.9366 -1.9088 31 1 4.3348 3.7551 -3.1505 32 1 3.2880 2.4396 -3.7352 33 1 1.2844 3.8147 -3.2418 34 1 2.3312 5.1302 -2.6571 35 1 1.6988 5.9891 -6.1660 36 1 0.4471 -2.4730 -0.5565 37 1 2.0546 -2.9543 2.0933 38 1 0.5709 -3.8989 1.5381 39 1 1.8097 -4.6124 -0.5578 40 1 3.2933 -3.6677 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606075105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:49 Heat of formation + Delta-G solvation = -147.345947 kcal Electronic energy + Delta-G solvation = -24775.339851 eV Core-core repulsion = 20976.767955 eV Total energy + Delta-G solvation = -3798.571896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.45897 -41.18724 -40.11330 -37.43245 -37.10472 -36.80144 -36.22525 -33.83362 -32.61574 -29.84342 -27.48954 -27.12107 -25.84083 -24.16289 -23.28679 -22.06238 -21.12325 -19.99893 -19.28910 -18.76005 -18.39714 -18.03892 -17.58656 -17.12241 -16.94713 -16.47293 -16.07744 -15.85960 -15.75799 -15.29987 -14.70270 -14.44517 -14.32401 -14.16646 -13.83187 -13.61278 -13.52924 -13.14965 -13.02038 -12.83391 -12.65789 -12.58505 -12.55029 -12.41143 -12.14283 -11.95049 -11.69113 -11.49731 -11.38460 -11.13974 -10.85316 -10.67672 -9.63493 -9.48675 -8.30928 -6.08725 1.16649 1.42276 1.48877 1.50277 1.59641 1.88602 1.95407 2.13753 2.36375 2.91802 3.03777 3.11611 3.59550 3.83699 3.95732 4.00641 4.08532 4.15828 4.29410 4.33075 4.41897 4.48956 4.64692 4.72328 4.74320 4.78671 4.87777 4.95140 4.97248 5.09117 5.24924 5.33249 5.42375 5.52369 5.58498 5.95219 6.35366 6.43758 6.98035 7.08401 7.20417 7.52124 7.94431 8.71489 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.004823 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.235994 B = 5803.999259 C = 7085.407428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.122 3.878 4 C 0.447 3.553 5 O -0.626 6.626 6 N -0.446 5.446 7 C -0.363 4.363 8 H 0.114 0.886 9 C -0.002 4.002 10 N -0.896 5.896 11 Si 0.988 3.012 12 H -0.261 1.261 13 H -0.292 1.292 14 H -0.255 1.255 15 C 0.127 3.873 16 C -0.112 4.112 17 C 0.494 3.506 18 O -0.552 6.552 19 O -0.505 6.505 20 C 0.527 3.473 21 O -0.598 6.598 22 C -0.201 4.201 23 C -0.123 4.123 24 C -0.161 4.161 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.271 0.729 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.427 0.573 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.176 -2.446 5.764 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.326 5.326 3 C -0.005 4.005 4 C 0.236 3.764 5 O -0.514 6.514 6 N -0.165 5.165 7 C -0.489 4.489 8 H 0.132 0.868 9 C -0.205 4.205 10 N -0.533 5.533 11 Si 0.810 3.190 12 H -0.185 1.185 13 H -0.218 1.218 14 H -0.179 1.179 15 C 0.002 3.998 16 C -0.150 4.150 17 C 0.337 3.663 18 O -0.443 6.443 19 O -0.319 6.319 20 C 0.318 3.682 21 O -0.479 6.479 22 C -0.222 4.222 23 C -0.160 4.160 24 C -0.198 4.198 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.288 0.712 36 H 0.168 0.832 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.457 -2.877 5.420 14.790 hybrid contribution 1.204 0.922 -0.814 1.721 sum -12.252 -1.956 4.606 13.235 Atomic orbital electron populations 1.22044 0.76470 1.04131 1.03383 1.47571 1.08765 1.04417 1.71892 1.21028 0.99135 0.86605 0.93700 1.21595 0.82431 0.80045 0.92359 1.90489 1.57381 1.55933 1.47585 1.43620 1.42495 1.23827 1.06555 1.19852 1.00676 1.34644 0.93768 0.86831 1.26382 0.95317 1.00198 0.98626 1.70029 1.08258 1.41155 1.33865 0.85081 0.77061 0.78422 0.78405 1.18539 1.21817 1.17882 1.20961 0.99632 0.95362 0.83843 1.21566 1.02158 1.01314 0.89974 1.23408 0.77811 0.75170 0.89867 1.90712 1.34469 1.57656 1.61487 1.84497 1.54082 1.55690 1.37592 1.20564 0.87041 0.86193 0.74430 1.90679 1.16705 1.88097 1.52426 1.22264 1.03186 0.88575 1.08168 1.23050 1.03596 0.99495 0.89828 1.23030 0.98692 0.95864 1.02259 0.89315 0.91358 0.89516 0.85167 0.89700 0.91918 0.88819 0.95338 0.87630 0.86068 0.71157 0.83225 0.89451 0.83840 0.85170 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 10.27 127.77 1.31 3.16 16 2 N -0.60 -20.80 2.37 -851.13 -2.02 -22.81 16 3 C 0.12 4.88 4.48 85.64 0.38 5.26 16 4 C 0.45 22.06 7.69 87.66 0.67 22.73 16 5 O -0.63 -34.03 16.00 -3.08 -0.05 -34.08 16 6 N -0.45 -22.63 2.54 -635.54 -1.61 -24.25 16 7 C -0.36 -17.81 8.57 84.04 0.72 -17.09 16 8 H 0.11 4.97 7.18 -2.91 -0.02 4.95 16 9 C 0.00 -0.10 4.97 84.93 0.42 0.32 16 10 N -0.90 -50.33 11.33 21.66 0.25 -50.08 16 11 Si 0.99 38.84 29.61 68.60 2.03 40.87 16 12 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 13 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 15 C 0.13 6.41 4.33 86.38 0.37 6.78 16 16 C -0.11 -4.34 6.13 29.85 0.18 -4.16 16 17 C 0.49 18.00 8.33 71.24 0.59 18.60 16 18 O -0.55 -24.48 16.74 21.97 0.37 -24.11 16 19 O -0.51 -13.16 13.42 -51.45 -0.69 -13.85 16 20 C 0.53 20.17 7.46 87.66 0.65 20.83 16 21 O -0.60 -29.62 15.84 -3.03 -0.05 -29.66 16 22 C -0.20 -5.21 5.29 -11.54 -0.06 -5.27 16 23 C -0.12 -2.32 10.24 30.61 0.31 -2.00 16 24 C -0.16 -3.84 10.05 30.61 0.31 -3.53 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 27 H 0.09 1.66 5.99 -2.39 -0.01 1.65 16 28 H 0.13 4.13 7.96 -2.39 -0.02 4.11 16 29 H 0.08 3.87 7.14 -2.39 -0.02 3.85 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.09 5.25 5.33 -2.39 -0.01 5.23 16 32 H 0.03 1.60 7.32 -2.39 -0.02 1.58 16 33 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 35 H 0.43 6.85 9.10 -74.06 -0.67 6.18 16 36 H 0.15 3.01 6.44 -2.39 -0.02 3.00 16 37 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 2.29 7.67 -2.39 -0.02 2.27 16 Total: -1.00 -82.30 346.32 4.51 -77.79 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.41 Total: 34.57 kcal Atomic # 6 Polarization: 39.75 SS G_CDS: 5.88 Total: 45.63 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -3.38 Total: -97.14 kcal Atomic # 8 Polarization: -101.29 SS G_CDS: -0.42 Total: -101.71 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -82.30 4.51 -77.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606075105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.558 kcal (2) G-P(sol) polarization free energy of solvation -82.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds