Wall clock time and date at job start Tue Mar 31 2020 03:42:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47393 * 2 1
4 4 C 1.52999 * 109.46801 * 239.99929 * 2 1 3
5 5 N 1.46503 * 109.47335 * 65.00312 * 4 2 1
6 6 C 1.36937 * 120.00297 * 179.97438 * 5 4 2
7 7 H 1.08005 * 119.99880 * 359.97438 * 6 5 4
8 8 C 1.38807 * 120.00174 * 179.97438 * 6 5 4
9 9 N 1.31620 * 119.99947 * 179.97438 * 8 6 5
10 10 Si 1.86804 * 120.00033 * 0.02562 * 8 6 5
11 11 H 1.48499 * 109.47083 * 89.99878 * 10 8 6
12 12 H 1.48499 * 109.47160 * 209.99966 * 10 8 6
13 13 H 1.48497 * 109.46876 * 329.99829 * 10 8 6
14 14 C 1.53000 * 109.46884 * 120.00254 * 2 1 3
15 15 N 1.46494 * 109.46881 * 294.99490 * 14 2 1
16 16 C 1.34779 * 119.99968 * 180.02562 * 15 14 2
17 17 O 1.21279 * 119.99900 * 0.02562 * 16 15 14
18 18 C 1.50699 * 120.00361 * 180.02562 * 16 15 14
19 19 C 1.52996 * 109.47553 * 180.02562 * 18 16 15
20 20 H 1.08995 * 110.65948 * 57.91003 * 19 18 16
21 21 N 1.47318 * 110.59321 * 295.00007 * 19 18 16
22 22 C 1.34529 * 106.61686 * 241.24477 * 21 19 18
23 23 O 1.21541 * 123.77327 * 180.23184 * 22 21 19
24 24 N 1.33788 * 112.45716 * 0.22584 * 22 21 19
25 25 C 1.34769 * 111.64773 * 0.02562 * 24 22 21
26 26 O 1.21233 * 127.15967 * 180.02562 * 25 24 22
27 27 H 1.08996 * 109.47393 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.46657 * 300.00356 * 1 2 3
29 29 H 1.09010 * 109.46909 * 59.99578 * 1 2 3
30 30 H 1.09001 * 109.47410 * 185.00090 * 4 2 1
31 31 H 1.09000 * 109.47333 * 305.00091 * 4 2 1
32 32 H 0.96999 * 119.99798 * 359.97438 * 5 4 2
33 33 H 0.96998 * 119.99915 * 180.02562 * 9 8 6
34 34 H 1.08997 * 109.46890 * 174.99457 * 14 2 1
35 35 H 1.08994 * 109.47260 * 54.99778 * 14 2 1
36 36 H 0.97001 * 120.00609 * 0.02562 * 15 14 2
37 37 H 1.09005 * 109.47123 * 59.99580 * 18 16 15
38 38 H 1.09001 * 109.46794 * 300.00028 * 18 16 15
39 39 H 0.97001 * 126.69459 * 61.51475 * 21 19 18
40 40 H 0.97006 * 124.17552 * 180.02562 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2492
5 7 1.6524 0.0353 -2.4424
6 6 2.0019 -0.4203 -3.6856
7 1 2.5636 -1.3372 -3.7865
8 6 1.6342 0.2963 -4.8161
9 7 1.9706 -0.1414 -6.0109
10 14 0.6634 1.8827 -4.6416
11 1 1.6022 3.0274 -4.5252
12 1 -0.1989 2.0693 -5.8361
13 1 -0.1850 1.8125 -3.4248
14 6 2.0400 -0.7213 1.2492
15 7 1.6525 0.0353 2.4423
16 6 1.9964 -0.4131 3.6659
17 8 2.6271 -1.4428 3.7791
18 6 1.5974 0.3649 4.8933
19 6 2.1085 -0.3557 6.1424
20 1 3.1909 -0.4761 6.1010
21 7 1.4469 -1.6632 6.2936
22 6 0.7835 -1.6258 7.4633
23 8 0.1288 -2.5526 7.8988
24 7 0.9251 -0.4543 8.0939
25 6 1.7004 0.3968 7.3934
26 8 2.0114 1.5272 7.7022
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3632 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 3.1263 -0.7996 -1.2057
31 1 1.6053 -1.7198 -1.2952
32 1 1.1483 0.8591 -2.3518
33 1 1.7140 0.3596 -6.8009
34 1 3.1262 -0.7996 1.2055
35 1 1.6053 -1.7198 1.2951
36 1 1.1483 0.8591 2.3518
37 1 0.5110 0.4424 4.9370
38 1 2.0313 1.3637 4.8473
39 1 1.4855 -2.4076 5.6728
40 1 0.5197 -0.2436 8.9496
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001666563233.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:21
Heat of formation + Delta-G solvation = -77.434063 kcal
Electronic energy + Delta-G solvation = -23463.875671 eV
Core-core repulsion = 19700.628133 eV
Total energy + Delta-G solvation = -3763.247538 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.87246 -40.07059 -39.10979 -37.26480 -36.60234 -34.71557 -34.45830 -32.73649
-31.44360 -30.49476 -27.19213 -26.29573 -25.05089 -23.21369 -22.30425 -21.83371
-20.90867 -20.15748 -18.87054 -18.00013 -17.48776 -17.19766 -17.00394 -16.46420
-16.09175 -16.00951 -15.68556 -14.96609 -14.75054 -14.54707 -14.33620 -14.08655
-13.76963 -13.50771 -13.24059 -12.89736 -12.57049 -12.38435 -12.26375 -11.56705
-11.52643 -11.13074 -10.90351 -10.84623 -10.84283 -10.73012 -10.71232 -10.27064
-10.13390 -9.97991 -9.63285 -9.33088 -8.95804 -7.29278 -5.81488 -3.17705
1.01798 1.93158 2.21569 2.51073 2.55919 2.88616 3.30903 3.33542
3.40370 3.45610 3.88420 4.26379 4.40650 4.53562 4.74608 4.80115
4.86004 4.97709 5.01596 5.12535 5.48484 5.49043 5.55513 5.64471
5.73595 5.76319 5.96066 6.10976 6.20163 6.34857 6.36854 6.44250
6.56835 6.65842 6.83322 7.13235 7.68106 7.81567 7.94276 8.37231
9.15760 9.87727 10.06938 11.36875
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.034980 B = 0.002349 C = 0.002298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 800.259843 B =11915.624822 C =12181.825193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.115 4.115
3 H 0.077 0.923
4 C 0.165 3.835
5 N -0.754 5.754
6 C -0.245 4.245
7 H 0.091 0.909
8 C 0.004 3.996
9 N -0.933 5.933
10 Si 0.886 3.114
11 H -0.284 1.284
12 H -0.291 1.291
13 H -0.278 1.278
14 C 0.126 3.874
15 N -0.720 5.720
16 C 0.516 3.484
17 O -0.541 6.541
18 C -0.146 4.146
19 C 0.110 3.890
20 H 0.139 0.861
21 N -0.710 5.710
22 C 0.700 3.300
23 O -0.544 6.544
24 N -0.679 5.679
25 C 0.530 3.470
26 O -0.464 6.464
27 H 0.057 0.943
28 H 0.044 0.956
29 H 0.064 0.936
30 H 0.030 0.970
31 H 0.030 0.970
32 H 0.361 0.639
33 H 0.260 0.740
34 H 0.073 0.927
35 H 0.072 0.928
36 H 0.402 0.598
37 H 0.106 0.894
38 H 0.123 0.877
39 H 0.449 0.551
40 H 0.433 0.567
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.260 2.966 27.926 28.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.135 4.135
3 H 0.095 0.905
4 C 0.037 3.963
5 N -0.400 5.400
6 C -0.375 4.375
7 H 0.108 0.892
8 C -0.192 4.192
9 N -0.581 5.581
10 Si 0.716 3.284
11 H -0.211 1.211
12 H -0.217 1.217
13 H -0.204 1.204
14 C 0.002 3.998
15 N -0.371 5.371
16 C 0.302 3.698
17 O -0.419 6.419
18 C -0.187 4.187
19 C 0.000 4.000
20 H 0.157 0.843
21 N -0.376 5.376
22 C 0.399 3.601
23 O -0.417 6.417
24 N -0.351 5.351
25 C 0.315 3.685
26 O -0.332 6.332
27 H 0.077 0.923
28 H 0.063 0.937
29 H 0.083 0.917
30 H 0.048 0.952
31 H 0.048 0.952
32 H 0.194 0.806
33 H 0.070 0.930
34 H 0.091 0.909
35 H 0.091 0.909
36 H 0.237 0.763
37 H 0.125 0.875
38 H 0.141 0.859
39 H 0.296 0.704
40 H 0.276 0.724
Dipole moment (debyes) X Y Z Total
from point charges -1.841 2.180 28.110 28.254
hybrid contribution -1.107 1.415 -0.056 1.798
sum -2.948 3.595 28.053 28.436
Atomic orbital electron populations
1.21827 0.94719 1.02315 1.01304 1.21618 0.96656 1.00602 0.94583
0.90504 1.20548 0.97227 0.94233 0.84280 1.42680 1.67672 1.27318
1.02355 1.19054 1.29464 1.07267 0.81730 0.89169 1.24687 1.00741
0.98662 0.95108 1.69700 1.51194 1.40250 0.96953 0.86540 0.80216
0.84803 0.76851 1.21081 1.21705 1.20414 1.21451 1.00496 0.95301
0.82511 1.46040 1.57204 1.27932 1.05941 1.20204 0.79504 0.85675
0.84460 1.90723 1.40071 1.24452 1.86650 1.21900 1.04388 1.01236
0.91166 1.21766 1.01679 0.83498 0.93073 0.84330 1.45692 1.52346
1.17262 1.22306 1.15935 0.80231 0.82329 0.81565 1.91078 1.43750
1.37416 1.69450 1.44325 1.49865 1.15714 1.25179 1.20736 0.77053
0.85259 0.85455 1.90876 1.53938 1.15649 1.72770 0.92341 0.93689
0.91711 0.95206 0.95161 0.80633 0.93008 0.90859 0.90921 0.76301
0.87525 0.85940 0.70436 0.72412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.74 8.94 37.16 0.33 -1.40 16
2 C -0.12 -1.45 2.46 -90.62 -0.22 -1.67 16
3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
4 C 0.16 2.90 5.65 -4.04 -0.02 2.88 16
5 N -0.75 -16.99 5.13 -59.91 -0.31 -17.29 16
6 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16
7 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16
8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16
9 N -0.93 -28.95 13.97 55.49 0.78 -28.17 16
10 Si 0.89 21.45 27.74 -169.99 -4.71 16.73 16
11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
13 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16
14 C 0.13 1.33 5.06 -4.04 -0.02 1.31 16
15 N -0.72 -5.61 5.28 -60.30 -0.32 -5.93 16
16 C 0.52 4.05 7.71 -10.99 -0.08 3.96 16
17 O -0.54 -5.94 14.85 5.56 0.08 -5.86 16
18 C -0.15 -0.66 5.47 -27.89 -0.15 -0.81 16
19 C 0.11 0.59 3.19 -68.20 -0.22 0.37 16
20 H 0.14 0.68 8.07 -51.93 -0.42 0.26 16
21 N -0.71 -4.79 5.85 -59.19 -0.35 -5.13 16
22 C 0.70 5.71 8.99 -88.02 -0.79 4.92 16
23 O -0.54 -6.57 18.04 5.33 0.10 -6.48 16
24 N -0.68 -3.87 5.70 -15.79 -0.09 -3.96 16
25 C 0.53 3.23 8.14 -10.56 -0.09 3.14 16
26 O -0.46 -4.00 18.02 5.60 0.10 -3.90 16
27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16
29 H 0.06 0.93 7.18 -51.92 -0.37 0.56 16
30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.36 7.83 4.71 -40.82 -0.19 7.64 16
33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.40 2.27 7.65 -40.82 -0.31 1.96 16
37 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16
38 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.45 3.28 8.01 -40.82 -0.33 2.95 16
40 H 0.43 1.68 8.96 -40.82 -0.37 1.32 16
LS Contribution 340.19 15.07 5.13 5.13
Total: -1.00 -35.63 340.19 -6.45 -42.08
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -5.34 Total: 7.01 kcal
Atomic # 6 Polarization: 7.29 SS G_CDS: -1.52 Total: 5.77 kcal
Atomic # 7 Polarization: -60.20 SS G_CDS: -0.29 Total: -60.49 kcal
Atomic # 8 Polarization: -16.51 SS G_CDS: 0.28 Total: -16.23 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -35.63 -6.45 -42.08 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666563233.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.350 kcal
(2) G-P(sol) polarization free energy of solvation -35.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds