Wall clock time and date at job start Tue Mar 31 2020 03:42:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47393 * 2 1
4 4 C 1.52999 * 109.46801 * 239.99929 * 2 1 3
5 5 N 1.46503 * 109.47335 * 65.00312 * 4 2 1
6 6 C 1.36937 * 120.00297 * 179.97438 * 5 4 2
7 7 H 1.08005 * 119.99880 * 359.97438 * 6 5 4
8 8 C 1.38807 * 120.00174 * 179.97438 * 6 5 4
9 9 N 1.31620 * 119.99947 * 179.97438 * 8 6 5
10 10 Si 1.86804 * 120.00033 * 0.02562 * 8 6 5
11 11 H 1.48499 * 109.47083 * 89.99878 * 10 8 6
12 12 H 1.48499 * 109.47160 * 209.99966 * 10 8 6
13 13 H 1.48497 * 109.46876 * 329.99829 * 10 8 6
14 14 C 1.53000 * 109.46884 * 120.00254 * 2 1 3
15 15 N 1.46494 * 109.46881 * 294.99490 * 14 2 1
16 16 C 1.34779 * 119.99968 * 180.02562 * 15 14 2
17 17 O 1.21279 * 119.99900 * 0.02562 * 16 15 14
18 18 C 1.50699 * 120.00361 * 180.02562 * 16 15 14
19 19 C 1.52996 * 109.47553 * 180.02562 * 18 16 15
20 20 H 1.08995 * 110.65948 * 57.91003 * 19 18 16
21 21 N 1.47318 * 110.59321 * 295.00007 * 19 18 16
22 22 C 1.34529 * 106.61686 * 241.24477 * 21 19 18
23 23 O 1.21541 * 123.77327 * 180.23184 * 22 21 19
24 24 N 1.33788 * 112.45716 * 0.22584 * 22 21 19
25 25 C 1.34769 * 111.64773 * 0.02562 * 24 22 21
26 26 O 1.21233 * 127.15967 * 180.02562 * 25 24 22
27 27 H 1.08996 * 109.47393 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.46657 * 300.00356 * 1 2 3
29 29 H 1.09010 * 109.46909 * 59.99578 * 1 2 3
30 30 H 1.09001 * 109.47410 * 185.00090 * 4 2 1
31 31 H 1.09000 * 109.47333 * 305.00091 * 4 2 1
32 32 H 0.96999 * 119.99798 * 359.97438 * 5 4 2
33 33 H 0.96998 * 119.99915 * 180.02562 * 9 8 6
34 34 H 1.08997 * 109.46890 * 174.99457 * 14 2 1
35 35 H 1.08994 * 109.47260 * 54.99778 * 14 2 1
36 36 H 0.97001 * 120.00609 * 0.02562 * 15 14 2
37 37 H 1.09005 * 109.47123 * 59.99580 * 18 16 15
38 38 H 1.09001 * 109.46794 * 300.00028 * 18 16 15
39 39 H 0.97001 * 126.69459 * 61.51475 * 21 19 18
40 40 H 0.97006 * 124.17552 * 180.02562 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2492
5 7 1.6524 0.0353 -2.4424
6 6 2.0019 -0.4203 -3.6856
7 1 2.5636 -1.3372 -3.7865
8 6 1.6342 0.2963 -4.8161
9 7 1.9706 -0.1414 -6.0109
10 14 0.6634 1.8827 -4.6416
11 1 1.6022 3.0274 -4.5252
12 1 -0.1989 2.0693 -5.8361
13 1 -0.1850 1.8125 -3.4248
14 6 2.0400 -0.7213 1.2492
15 7 1.6525 0.0353 2.4423
16 6 1.9964 -0.4131 3.6659
17 8 2.6271 -1.4428 3.7791
18 6 1.5974 0.3649 4.8933
19 6 2.1085 -0.3557 6.1424
20 1 3.1909 -0.4761 6.1010
21 7 1.4469 -1.6632 6.2936
22 6 0.7835 -1.6258 7.4633
23 8 0.1288 -2.5526 7.8988
24 7 0.9251 -0.4543 8.0939
25 6 1.7004 0.3968 7.3934
26 8 2.0114 1.5272 7.7022
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3632 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 3.1263 -0.7996 -1.2057
31 1 1.6053 -1.7198 -1.2952
32 1 1.1483 0.8591 -2.3518
33 1 1.7140 0.3596 -6.8009
34 1 3.1262 -0.7996 1.2055
35 1 1.6053 -1.7198 1.2951
36 1 1.1483 0.8591 2.3518
37 1 0.5110 0.4424 4.9370
38 1 2.0313 1.3637 4.8473
39 1 1.4855 -2.4076 5.6728
40 1 0.5197 -0.2436 8.9496
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001666563233.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:21
Heat of formation + Delta-G solvation = -108.925961 kcal
Electronic energy + Delta-G solvation = -23465.241263 eV
Core-core repulsion = 19700.628133 eV
Total energy + Delta-G solvation = -3764.613129 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-43.43195 -40.75411 -39.74055 -38.37905 -37.33044 -36.03310 -35.01930 -34.17374
-32.59643 -31.69028 -27.99682 -27.58677 -26.05225 -23.97223 -23.70301 -22.53148
-21.66023 -21.25128 -19.67358 -19.40435 -18.34802 -17.81302 -17.64209 -17.17607
-16.83471 -16.70957 -16.43070 -16.31269 -15.80625 -15.63588 -15.33141 -15.05894
-14.97613 -14.50018 -14.23517 -13.92130 -13.82926 -13.59923 -13.20111 -12.91095
-12.80957 -12.23642 -12.17891 -12.08195 -11.98210 -11.73690 -11.66572 -11.51302
-11.47685 -10.97620 -10.92419 -10.55684 -10.05658 -9.29173 -8.02156 -5.36230
0.48055 1.37862 1.40114 1.43275 1.50594 1.62677 1.90910 2.00507
2.29265 2.49505 2.93801 3.29165 3.44305 3.58537 3.84997 3.88343
3.97398 4.07507 4.16452 4.37828 4.51125 4.55847 4.66460 4.74394
4.82371 4.95894 5.04788 5.05294 5.12572 5.31881 5.41061 5.50285
5.76160 5.76273 5.87638 6.21544 6.33612 6.55172 7.08438 7.08895
7.23786 7.84166 8.04329 9.19486
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.034980 B = 0.002349 C = 0.002298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 800.259843 B =11915.624822 C =12181.825193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.099 4.099
3 H 0.089 0.911
4 C 0.158 3.842
5 N -0.754 5.754
6 C -0.237 4.237
7 H 0.053 0.947
8 C -0.068 4.068
9 N -0.986 5.986
10 Si 0.959 3.041
11 H -0.277 1.277
12 H -0.298 1.298
13 H -0.245 1.245
14 C 0.137 3.863
15 N -0.712 5.712
16 C 0.516 3.484
17 O -0.575 6.575
18 C -0.135 4.135
19 C 0.111 3.889
20 H 0.148 0.852
21 N -0.704 5.704
22 C 0.704 3.296
23 O -0.587 6.587
24 N -0.668 5.668
25 C 0.543 3.457
26 O -0.484 6.484
27 H 0.051 0.949
28 H 0.082 0.918
29 H 0.043 0.957
30 H 0.024 0.976
31 H 0.022 0.978
32 H 0.368 0.632
33 H 0.258 0.742
34 H 0.063 0.937
35 H 0.064 0.936
36 H 0.417 0.583
37 H 0.126 0.874
38 H 0.148 0.852
39 H 0.447 0.553
40 H 0.442 0.558
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.307 5.286 30.159 30.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.118 4.118
3 H 0.107 0.893
4 C 0.031 3.969
5 N -0.401 5.401
6 C -0.368 4.368
7 H 0.071 0.929
8 C -0.260 4.260
9 N -0.637 5.637
10 Si 0.786 3.214
11 H -0.203 1.203
12 H -0.225 1.225
13 H -0.169 1.169
14 C 0.013 3.987
15 N -0.364 5.364
16 C 0.303 3.697
17 O -0.455 6.455
18 C -0.176 4.176
19 C 0.001 3.999
20 H 0.165 0.835
21 N -0.369 5.369
22 C 0.403 3.597
23 O -0.463 6.463
24 N -0.339 5.339
25 C 0.329 3.671
26 O -0.354 6.354
27 H 0.070 0.930
28 H 0.101 0.899
29 H 0.062 0.938
30 H 0.042 0.958
31 H 0.041 0.959
32 H 0.202 0.798
33 H 0.067 0.933
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.254 0.746
37 H 0.144 0.856
38 H 0.166 0.834
39 H 0.293 0.707
40 H 0.286 0.714
Dipole moment (debyes) X Y Z Total
from point charges -2.892 4.537 30.408 30.880
hybrid contribution -0.685 0.580 -0.730 1.157
sum -3.577 5.117 29.678 30.327
Atomic orbital electron populations
1.21813 0.93828 1.02211 1.02096 1.21407 0.97185 1.00555 0.92672
0.89289 1.20732 0.96984 0.94168 0.85026 1.42641 1.67594 1.27917
1.01924 1.19033 1.27931 1.05734 0.84094 0.92939 1.25600 1.02724
1.03077 0.94565 1.69903 1.53419 1.42339 0.97994 0.85349 0.78793
0.79553 0.77707 1.20258 1.22523 1.16901 1.21106 0.99750 0.95034
0.82859 1.45863 1.57288 1.28196 1.05058 1.20711 0.78585 0.85296
0.85071 1.90724 1.41580 1.26096 1.87111 1.21896 1.05708 1.01446
0.88521 1.21882 1.02110 0.82644 0.93230 0.83482 1.45716 1.51745
1.17789 1.21677 1.15978 0.79770 0.82236 0.81742 1.91052 1.45750
1.38993 1.70535 1.44185 1.49502 1.14849 1.25394 1.20653 0.76381
0.84706 0.85360 1.90884 1.54718 1.16549 1.73284 0.92984 0.89923
0.93803 0.95779 0.95947 0.79772 0.93347 0.91847 0.91750 0.74609
0.85580 0.83396 0.70670 0.71423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 8.94 71.98 0.64 -2.33 16
2 C -0.10 -2.24 2.46 -10.79 -0.03 -2.27 16
3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
4 C 0.16 5.45 5.65 86.38 0.49 5.94 16
5 N -0.75 -33.34 5.13 -343.45 -1.76 -35.10 16
6 C -0.24 -13.33 10.47 84.03 0.88 -12.45 16
7 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16
8 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16
9 N -0.99 -62.92 13.97 21.65 0.30 -62.62 16
10 Si 0.96 43.82 27.74 68.60 1.90 45.73 16
11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16
12 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16
13 H -0.24 -9.73 6.52 99.48 0.65 -9.08 16
14 C 0.14 2.61 5.06 86.38 0.44 3.05 16
15 N -0.71 -8.64 5.28 -463.08 -2.45 -11.08 16
16 C 0.52 6.54 7.71 87.66 0.68 7.22 16
17 O -0.58 -11.56 14.85 -3.03 -0.04 -11.61 16
18 C -0.14 -0.71 5.47 29.85 0.16 -0.55 16
19 C 0.11 0.89 3.19 44.37 0.14 1.04 16
20 H 0.15 1.05 8.07 -2.39 -0.02 1.03 16
21 N -0.70 -8.32 5.85 -459.61 -2.69 -11.00 16
22 C 0.70 10.58 8.99 179.44 1.61 12.19 16
23 O -0.59 -13.96 18.04 -3.84 -0.07 -14.03 16
24 N -0.67 -6.41 5.70 -441.12 -2.52 -8.93 16
25 C 0.54 5.26 8.14 87.94 0.72 5.97 16
26 O -0.48 -7.11 18.02 -2.89 -0.05 -7.16 16
27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
28 H 0.08 1.11 7.18 -2.39 -0.02 1.09 16
29 H 0.04 1.12 7.18 -2.38 -0.02 1.10 16
30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.37 15.11 4.71 -92.71 -0.44 14.67 16
33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16
34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
36 H 0.42 2.76 7.65 -92.71 -0.71 2.05 16
37 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16
38 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16
39 H 0.45 6.00 8.01 -92.71 -0.74 5.26 16
40 H 0.44 2.74 8.96 -92.70 -0.83 1.91 16
Total: -1.00 -79.63 340.19 -2.84 -82.47
By element:
Atomic # 1 Polarization: 20.71 SS G_CDS: -1.66 Total: 19.05 kcal
Atomic # 6 Polarization: 8.08 SS G_CDS: 6.20 Total: 14.28 kcal
Atomic # 7 Polarization: -119.62 SS G_CDS: -9.11 Total: -128.73 kcal
Atomic # 8 Polarization: -32.63 SS G_CDS: -0.17 Total: -32.80 kcal
Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal
Total: -79.63 -2.84 -82.47 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666563233.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.456 kcal
(2) G-P(sol) polarization free energy of solvation -79.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.091 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds