Wall clock time and date at job start Tue Mar 31 2020 04:20:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99792 * 2 1
4 4 H 1.48502 * 109.47354 * 239.99946 * 3 2 1
5 5 H 1.48501 * 109.47240 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46952 * 120.00094 * 3 2 1
7 7 C 1.38818 * 120.00523 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00227 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99459 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99856 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47226 * 179.97438 * 10 9 7
12 12 H 1.09004 * 109.47434 * 64.99688 * 11 10 9
13 13 N 1.46498 * 109.46963 * 304.99288 * 11 10 9
14 14 C 1.34777 * 119.99828 * 154.72290 * 13 11 10
15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11
16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11
17 17 O 1.42900 * 109.47361 * 180.02562 * 16 14 13
18 18 C 1.42898 * 113.99575 * 180.02562 * 17 16 14
19 19 H 1.09000 * 110.43896 * 328.90820 * 18 17 16
20 20 C 1.54816 * 110.48321 * 206.21790 * 18 17 16
21 21 C 1.54997 * 102.09207 * 220.44198 * 20 18 17
22 22 O 1.44377 * 103.48906 * 37.03059 * 21 20 18
23 23 C 1.43743 * 106.97318 * 319.93549 * 22 21 20
24 24 C 1.52997 * 109.47114 * 184.99495 * 11 10 9
25 25 C 1.53001 * 117.50076 * 248.61884 * 24 11 10
26 26 C 1.52996 * 117.50043 * 179.97438 * 24 11 10
27 27 H 0.96991 * 119.99962 * 0.02562 * 1 2 3
28 28 H 0.96998 * 120.00024 * 359.97438 * 9 7 2
29 29 H 1.08995 * 109.47176 * 59.99396 * 10 9 7
30 30 H 1.09008 * 109.46559 * 299.99527 * 10 9 7
31 31 H 0.97001 * 120.00384 * 335.00737 * 13 11 10
32 32 H 1.08998 * 109.46954 * 300.00581 * 16 14 13
33 33 H 1.09002 * 109.46946 * 59.99717 * 16 14 13
34 34 H 1.08998 * 110.90994 * 338.64665 * 20 18 17
35 35 H 1.09007 * 110.90224 * 102.25034 * 20 18 17
36 36 H 1.08996 * 110.62187 * 278.52733 * 21 20 18
37 37 H 1.09008 * 110.61281 * 155.52802 * 21 20 18
38 38 H 1.09002 * 109.88024 * 267.08921 * 23 22 21
39 39 H 1.09004 * 110.00185 * 146.01225 * 23 22 21
40 40 H 1.09003 * 115.55144 * 34.32694 * 24 11 10
41 41 H 1.09001 * 117.49901 * 0.02562 * 25 24 11
42 42 H 1.09004 * 117.49836 * 145.02257 * 25 24 11
43 43 H 1.09002 * 117.50324 * 214.98207 * 26 24 11
44 44 H 1.09001 * 117.49640 * 0.02562 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6964 1.2125
7 6 2.0104 -1.2021 -0.0005
8 1 3.0904 -1.2021 -0.0001
9 7 1.3257 -2.3880 -0.0016
10 6 2.0582 -3.6568 -0.0016
11 6 1.0641 -4.8197 -0.0022
12 1 0.4981 -4.8135 -0.9338
13 7 0.1443 -4.6764 1.1290
14 6 -1.0822 -5.2325 1.0748
15 8 -1.4226 -5.8559 0.0917
16 6 -2.0308 -5.0799 2.2359
17 8 -3.2565 -5.7529 1.9413
18 6 -4.2308 -5.6684 2.9832
19 1 -3.7434 -5.6142 3.9566
20 6 -5.1946 -6.8785 2.9231
21 6 -6.5637 -6.2186 3.2271
22 8 -6.4780 -4.9418 2.5586
23 6 -5.1451 -4.4466 2.7690
24 6 1.8249 -6.1411 0.1233
25 6 1.8323 -7.0704 -1.0921
26 6 1.0022 -7.4310 0.1420
27 1 -0.4849 0.8400 -0.0004
28 1 0.3557 -2.3880 -0.0016
29 1 2.6843 -3.7148 0.8887
30 1 2.6855 -3.7140 -0.8913
31 1 0.4164 -4.1778 1.9152
32 1 -1.5837 -5.5146 3.1298
33 1 -2.2288 -4.0217 2.4066
34 1 -5.1917 -7.3292 1.9307
35 1 -4.9407 -7.6161 3.6845
36 1 -6.6940 -6.0818 4.3006
37 1 -7.3773 -6.8146 2.8135
38 1 -5.1222 -3.8073 3.6516
39 1 -4.8140 -3.8844 1.8957
40 1 2.7243 -6.1092 0.7383
41 1 1.2956 -6.7401 -1.9815
42 1 2.7369 -7.6499 -1.2771
43 1 1.3607 -8.2477 0.7686
44 1 -0.0810 -7.3381 0.0643
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001670470307.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:20:19
Heat of formation + Delta-G solvation = -84.682721 kcal
Electronic energy + Delta-G solvation = -24570.944070 eV
Core-core repulsion = 20910.922550 eV
Total energy + Delta-G solvation = -3660.021520 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.07491 -39.52416 -37.55939 -36.57873 -35.01660 -33.40984 -31.68743 -31.16358
-29.23183 -28.52239 -26.87721 -24.00717 -22.98106 -22.15036 -21.54385 -21.50033
-20.73376 -20.00837 -17.51147 -17.48700 -16.96432 -16.42981 -16.21909 -15.67958
-15.64356 -15.04801 -14.93329 -14.67155 -14.26976 -13.86819 -13.39010 -13.17655
-13.03994 -12.84198 -12.56557 -12.43469 -12.13424 -11.88802 -11.66723 -11.65821
-11.18611 -11.04622 -10.98073 -10.92487 -10.82028 -10.23319 -10.13405 -10.09181
-9.95445 -9.71385 -9.61871 -9.44922 -8.94179 -8.64569 -6.99962 -5.81286
-3.11387 2.84097 2.88099 3.40750 3.45726 3.46646 3.69366 3.82722
4.17667 4.28620 4.52947 4.62275 4.70496 4.87637 4.88280 4.90193
5.05939 5.12784 5.17112 5.25604 5.28456 5.34046 5.42143 5.45875
5.47267 5.52379 5.71237 5.76910 5.77786 5.85621 5.89900 6.08167
6.21214 6.36318 6.46656 6.52741 6.58974 6.65441 6.87161 6.98802
7.64642 7.83111 8.36490 8.52106 9.48332 10.03565 10.39118 11.40945
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.011234 B = 0.004018 C = 0.003046
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2491.732235 B = 6967.316056 C = 9188.855915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C -0.011 4.011
3 Si 0.908 3.092
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.244 4.244
8 H 0.070 0.930
9 N -0.732 5.732
10 C 0.148 3.852
11 C 0.171 3.829
12 H 0.088 0.912
13 N -0.706 5.706
14 C 0.518 3.482
15 O -0.525 6.525
16 C 0.039 3.961
17 O -0.346 6.346
18 C 0.054 3.946
19 H 0.078 0.922
20 C -0.152 4.152
21 C 0.046 3.954
22 O -0.372 6.372
23 C 0.022 3.978
24 C -0.163 4.163
25 C -0.171 4.171
26 C -0.185 4.185
27 H 0.256 0.744
28 H 0.386 0.614
29 H 0.025 0.975
30 H 0.036 0.964
31 H 0.404 0.596
32 H 0.078 0.922
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.086 0.914
36 H 0.061 0.939
37 H 0.096 0.904
38 H 0.065 0.935
39 H 0.098 0.902
40 H 0.103 0.897
41 H 0.094 0.906
42 H 0.089 0.911
43 H 0.082 0.918
44 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.743 -15.347 9.398 18.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.207 4.207
3 Si 0.739 3.261
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.375 4.375
8 H 0.088 0.912
9 N -0.377 5.377
10 C 0.020 3.980
11 C 0.066 3.934
12 H 0.106 0.894
13 N -0.357 5.357
14 C 0.303 3.697
15 O -0.402 6.402
16 C -0.040 4.040
17 O -0.264 6.264
18 C -0.004 4.004
19 H 0.096 0.904
20 C -0.189 4.189
21 C -0.030 4.030
22 O -0.291 6.291
23 C -0.056 4.056
24 C -0.183 4.183
25 C -0.209 4.209
26 C -0.222 4.222
27 H 0.066 0.934
28 H 0.220 0.780
29 H 0.043 0.957
30 H 0.054 0.946
31 H 0.239 0.761
32 H 0.096 0.904
33 H 0.103 0.897
34 H 0.112 0.888
35 H 0.105 0.895
36 H 0.080 0.920
37 H 0.114 0.886
38 H 0.083 0.917
39 H 0.116 0.884
40 H 0.121 0.879
41 H 0.113 0.887
42 H 0.108 0.892
43 H 0.101 0.899
44 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -6.069 -15.643 8.388 18.759
hybrid contribution 0.690 1.321 0.817 1.699
sum -5.379 -14.322 9.205 17.854
Atomic orbital electron populations
1.69650 1.05111 1.25873 1.57299 1.24746 0.95502 0.97699 1.02746
0.86264 0.78519 0.83484 0.77854 1.21239 1.21678 1.21267 1.19170
0.91016 0.84042 1.43313 0.91164 1.42342 1.05981 0.99719 1.89634
1.20919 0.92995 0.85049 0.99001 1.20802 0.90012 0.92782 0.89784
0.89370 1.45826 1.14042 1.54853 1.21024 1.20023 0.82162 0.79278
0.88189 1.90641 1.75832 1.40563 1.33123 1.22336 0.86023 0.98826
0.96861 1.88107 1.23123 1.74650 1.40490 1.23590 0.90193 0.95295
0.91353 0.90386 1.23214 0.93965 0.97241 1.04511 1.23543 0.97455
0.84808 0.97211 1.88919 1.29930 1.35052 1.75213 1.23804 0.82690
0.96290 1.02774 1.22652 1.01454 0.91442 1.02757 1.22894 1.02028
1.03112 0.92818 1.23260 1.00720 0.97410 1.00820 0.93391 0.78019
0.95723 0.94631 0.76123 0.90385 0.89718 0.88812 0.89531 0.92035
0.88564 0.91655 0.88390 0.87881 0.88718 0.89214 0.89921 0.86490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16
2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16
3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16
4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16
8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
9 N -0.73 -17.79 5.43 -59.91 -0.33 -18.11 16
10 C 0.15 2.84 5.80 -4.04 -0.02 2.82 16
11 C 0.17 2.85 2.43 -67.93 -0.17 2.68 16
12 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16
13 N -0.71 -10.90 4.50 -53.81 -0.24 -11.14 16
14 C 0.52 8.35 7.24 -10.98 -0.08 8.27 16
15 O -0.53 -10.27 13.54 -14.36 -0.19 -10.46 16
16 C 0.04 0.50 6.28 36.01 0.23 0.72 16
17 O -0.35 -4.84 9.49 -55.14 -0.52 -5.37 16
18 C 0.05 0.57 3.51 -25.20 -0.09 0.48 16
19 H 0.08 0.62 7.86 -51.93 -0.41 0.22 16
20 C -0.15 -1.37 6.90 -24.72 -0.17 -1.54 16
21 C 0.05 0.40 7.72 38.21 0.29 0.70 16
22 O -0.37 -4.71 11.52 -35.23 -0.41 -5.11 16
23 C 0.02 0.25 7.52 37.73 0.28 0.53 16
24 C -0.16 -2.30 5.36 -90.62 -0.49 -2.79 16
25 C -0.17 -2.28 10.18 -26.71 -0.27 -2.55 16
26 C -0.19 -2.57 9.74 -26.71 -0.26 -2.83 16
27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
28 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16
29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16
31 H 0.40 5.73 8.60 -40.82 -0.35 5.38 16
32 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16
33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
34 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16
35 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16
36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16
38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.10 1.28 7.97 -51.93 -0.41 0.87 16
40 H 0.10 1.34 8.11 -51.93 -0.42 0.91 16
41 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16
42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16
44 H 0.12 1.92 5.03 -51.93 -0.26 1.66 16
LS Contribution 362.48 15.07 5.46 5.46
Total: -1.00 -33.12 362.48 -8.66 -41.78
By element:
Atomic # 1 Polarization: 20.69 SS G_CDS: -7.15 Total: 13.55 kcal
Atomic # 6 Polarization: 0.30 SS G_CDS: -0.99 Total: -0.68 kcal
Atomic # 7 Polarization: -56.27 SS G_CDS: 0.16 Total: -56.11 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: -1.12 Total: -20.94 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -33.12 -8.66 -41.78 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670470307.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.899 kcal
(2) G-P(sol) polarization free energy of solvation -33.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds