Wall clock time and date at job start Tue Mar 31 2020 04:20:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99792 * 2 1
4 4 H 1.48502 * 109.47354 * 239.99946 * 3 2 1
5 5 H 1.48501 * 109.47240 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46952 * 120.00094 * 3 2 1
7 7 C 1.38818 * 120.00523 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00227 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99459 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99856 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47226 * 179.97438 * 10 9 7
12 12 H 1.09004 * 109.47434 * 64.99688 * 11 10 9
13 13 N 1.46498 * 109.46963 * 304.99288 * 11 10 9
14 14 C 1.34777 * 119.99828 * 154.72290 * 13 11 10
15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11
16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11
17 17 O 1.42900 * 109.47361 * 180.02562 * 16 14 13
18 18 C 1.42898 * 113.99575 * 180.02562 * 17 16 14
19 19 H 1.09000 * 110.43896 * 328.90820 * 18 17 16
20 20 C 1.54816 * 110.48321 * 206.21790 * 18 17 16
21 21 C 1.54997 * 102.09207 * 220.44198 * 20 18 17
22 22 O 1.44377 * 103.48906 * 37.03059 * 21 20 18
23 23 C 1.43743 * 106.97318 * 319.93549 * 22 21 20
24 24 C 1.52997 * 109.47114 * 184.99495 * 11 10 9
25 25 C 1.53001 * 117.50076 * 248.61884 * 24 11 10
26 26 C 1.52996 * 117.50043 * 179.97438 * 24 11 10
27 27 H 0.96991 * 119.99962 * 0.02562 * 1 2 3
28 28 H 0.96998 * 120.00024 * 359.97438 * 9 7 2
29 29 H 1.08995 * 109.47176 * 59.99396 * 10 9 7
30 30 H 1.09008 * 109.46559 * 299.99527 * 10 9 7
31 31 H 0.97001 * 120.00384 * 335.00737 * 13 11 10
32 32 H 1.08998 * 109.46954 * 300.00581 * 16 14 13
33 33 H 1.09002 * 109.46946 * 59.99717 * 16 14 13
34 34 H 1.08998 * 110.90994 * 338.64665 * 20 18 17
35 35 H 1.09007 * 110.90224 * 102.25034 * 20 18 17
36 36 H 1.08996 * 110.62187 * 278.52733 * 21 20 18
37 37 H 1.09008 * 110.61281 * 155.52802 * 21 20 18
38 38 H 1.09002 * 109.88024 * 267.08921 * 23 22 21
39 39 H 1.09004 * 110.00185 * 146.01225 * 23 22 21
40 40 H 1.09003 * 115.55144 * 34.32694 * 24 11 10
41 41 H 1.09001 * 117.49901 * 0.02562 * 25 24 11
42 42 H 1.09004 * 117.49836 * 145.02257 * 25 24 11
43 43 H 1.09002 * 117.50324 * 214.98207 * 26 24 11
44 44 H 1.09001 * 117.49640 * 0.02562 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6964 1.2125
7 6 2.0104 -1.2021 -0.0005
8 1 3.0904 -1.2021 -0.0001
9 7 1.3257 -2.3880 -0.0016
10 6 2.0582 -3.6568 -0.0016
11 6 1.0641 -4.8197 -0.0022
12 1 0.4981 -4.8135 -0.9338
13 7 0.1443 -4.6764 1.1290
14 6 -1.0822 -5.2325 1.0748
15 8 -1.4226 -5.8559 0.0917
16 6 -2.0308 -5.0799 2.2359
17 8 -3.2565 -5.7529 1.9413
18 6 -4.2308 -5.6684 2.9832
19 1 -3.7434 -5.6142 3.9566
20 6 -5.1946 -6.8785 2.9231
21 6 -6.5637 -6.2186 3.2271
22 8 -6.4780 -4.9418 2.5586
23 6 -5.1451 -4.4466 2.7690
24 6 1.8249 -6.1411 0.1233
25 6 1.8323 -7.0704 -1.0921
26 6 1.0022 -7.4310 0.1420
27 1 -0.4849 0.8400 -0.0004
28 1 0.3557 -2.3880 -0.0016
29 1 2.6843 -3.7148 0.8887
30 1 2.6855 -3.7140 -0.8913
31 1 0.4164 -4.1778 1.9152
32 1 -1.5837 -5.5146 3.1298
33 1 -2.2288 -4.0217 2.4066
34 1 -5.1917 -7.3292 1.9307
35 1 -4.9407 -7.6161 3.6845
36 1 -6.6940 -6.0818 4.3006
37 1 -7.3773 -6.8146 2.8135
38 1 -5.1222 -3.8073 3.6516
39 1 -4.8140 -3.8844 1.8957
40 1 2.7243 -6.1092 0.7383
41 1 1.2956 -6.7401 -1.9815
42 1 2.7369 -7.6499 -1.2771
43 1 1.3607 -8.2477 0.7686
44 1 -0.0810 -7.3381 0.0643
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001670470307.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:20:19
Heat of formation + Delta-G solvation = -108.287826 kcal
Electronic energy + Delta-G solvation = -24571.967664 eV
Core-core repulsion = 20910.922550 eV
Total energy + Delta-G solvation = -3661.045114 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.20895 -40.50743 -38.68454 -37.68755 -36.61972 -34.98980 -33.07535 -32.43745
-30.38831 -29.66647 -28.13232 -25.84632 -23.76316 -23.31311 -23.05857 -22.32051
-21.94235 -21.28945 -19.28473 -18.46192 -18.17694 -17.53398 -17.26014 -16.80973
-16.68919 -16.60142 -16.01227 -15.81772 -15.66153 -15.18625 -15.00130 -14.70706
-14.35104 -13.88461 -13.76253 -13.51816 -13.18768 -13.15689 -12.78346 -12.75663
-12.70347 -12.47274 -12.39038 -12.24757 -12.11733 -11.84730 -11.71788 -11.26041
-11.09802 -10.97566 -10.96616 -10.69816 -10.48771 -9.95682 -9.01618 -7.94002
-5.23856 1.49135 1.51661 1.57713 1.60589 1.79409 2.56101 2.77171
2.96760 3.11211 3.40384 3.49300 3.57731 3.77651 3.85795 3.96642
4.02061 4.12410 4.15182 4.18659 4.21548 4.30271 4.34777 4.37478
4.46489 4.54435 4.63823 4.73597 4.79724 4.82286 4.89905 4.91157
5.04530 5.05241 5.11949 5.29289 5.37989 5.50611 5.57289 5.80839
6.07566 6.26265 6.60705 7.28268 7.33968 8.06615 8.30816 9.28743
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.011234 B = 0.004018 C = 0.003046
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2491.732235 B = 6967.316056 C = 9188.855915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.071 4.071
3 Si 0.973 3.027
4 H -0.282 1.282
5 H -0.299 1.299
6 H -0.274 1.274
7 C -0.246 4.246
8 H 0.079 0.921
9 N -0.743 5.743
10 C 0.151 3.849
11 C 0.180 3.820
12 H 0.054 0.946
13 N -0.700 5.700
14 C 0.511 3.489
15 O -0.566 6.566
16 C 0.044 3.956
17 O -0.377 6.377
18 C 0.050 3.950
19 H 0.112 0.888
20 C -0.149 4.149
21 C 0.043 3.957
22 O -0.405 6.405
23 C 0.018 3.982
24 C -0.162 4.162
25 C -0.168 4.168
26 C -0.181 4.181
27 H 0.250 0.750
28 H 0.374 0.626
29 H 0.045 0.955
30 H 0.035 0.965
31 H 0.412 0.588
32 H 0.119 0.881
33 H 0.091 0.909
34 H 0.070 0.930
35 H 0.116 0.884
36 H 0.087 0.913
37 H 0.107 0.893
38 H 0.086 0.914
39 H 0.069 0.931
40 H 0.125 0.875
41 H 0.078 0.922
42 H 0.117 0.883
43 H 0.106 0.894
44 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.316 -16.321 11.511 20.434
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.264 4.264
3 Si 0.802 3.198
4 H -0.208 1.208
5 H -0.225 1.225
6 H -0.199 1.199
7 C -0.377 4.377
8 H 0.097 0.903
9 N -0.386 5.386
10 C 0.024 3.976
11 C 0.075 3.925
12 H 0.072 0.928
13 N -0.352 5.352
14 C 0.298 3.702
15 O -0.446 6.446
16 C -0.035 4.035
17 O -0.296 6.296
18 C -0.008 4.008
19 H 0.130 0.870
20 C -0.186 4.186
21 C -0.033 4.033
22 O -0.325 6.325
23 C -0.059 4.059
24 C -0.181 4.181
25 C -0.205 4.205
26 C -0.218 4.218
27 H 0.059 0.941
28 H 0.206 0.794
29 H 0.063 0.937
30 H 0.053 0.947
31 H 0.248 0.752
32 H 0.136 0.864
33 H 0.109 0.891
34 H 0.089 0.911
35 H 0.134 0.866
36 H 0.105 0.895
37 H 0.125 0.875
38 H 0.104 0.896
39 H 0.087 0.913
40 H 0.143 0.857
41 H 0.096 0.904
42 H 0.135 0.865
43 H 0.124 0.876
44 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -4.598 -16.642 10.523 20.220
hybrid contribution 0.232 1.556 0.124 1.578
sum -4.366 -15.086 10.647 18.974
Atomic orbital electron populations
1.69816 1.06645 1.26084 1.59308 1.25536 0.96272 1.01014 1.03564
0.85229 0.77155 0.79228 0.78210 1.20788 1.22518 1.19948 1.19597
0.91609 0.85081 1.41453 0.90268 1.42513 1.05630 1.00916 1.89579
1.21039 0.93282 0.83723 0.99527 1.20539 0.89491 0.93508 0.88995
0.92816 1.45768 1.13975 1.54688 1.20771 1.20714 0.82448 0.78321
0.88710 1.90625 1.76565 1.42422 1.34964 1.22373 0.85297 0.99509
0.96300 1.88077 1.24015 1.74854 1.42650 1.23859 0.89707 0.95300
0.91917 0.86988 1.23247 0.93858 0.97295 1.04234 1.23795 0.97657
0.83316 0.98487 1.88874 1.30438 1.36884 1.76283 1.23843 0.82737
0.97020 1.02311 1.22569 1.01823 0.89898 1.03846 1.22979 1.02750
1.02815 0.91964 1.23182 0.99244 0.97831 1.01571 0.94106 0.79408
0.93734 0.94700 0.75221 0.86384 0.89121 0.91110 0.86568 0.89491
0.87511 0.89602 0.91299 0.85691 0.90375 0.86493 0.87555 0.89185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16
2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16
3 Si 0.97 45.08 29.55 68.60 2.03 47.11 16
4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16
6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
7 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16
8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16
9 N -0.74 -36.20 5.43 -343.45 -1.87 -38.07 16
10 C 0.15 5.66 5.80 86.38 0.50 6.16 16
11 C 0.18 5.99 2.43 44.99 0.11 6.10 16
12 H 0.05 2.17 7.33 -2.39 -0.02 2.15 16
13 N -0.70 -21.48 4.50 -442.53 -1.99 -23.47 16
14 C 0.51 16.64 7.24 87.66 0.63 17.28 16
15 O -0.57 -23.07 13.54 16.00 0.22 -22.86 16
16 C 0.04 1.08 6.28 71.24 0.45 1.53 16
17 O -0.38 -10.50 9.49 -129.94 -1.23 -11.74 16
18 C 0.05 0.98 3.51 31.59 0.11 1.09 16
19 H 0.11 1.42 7.86 -2.39 -0.02 1.40 16
20 C -0.15 -2.47 6.90 31.90 0.22 -2.25 16
21 C 0.04 0.69 7.72 72.67 0.56 1.25 16
22 O -0.41 -10.21 11.52 -148.98 -1.72 -11.92 16
23 C 0.02 0.41 7.52 72.35 0.54 0.95 16
24 C -0.16 -4.31 5.36 -10.80 -0.06 -4.37 16
25 C -0.17 -4.25 10.18 30.61 0.31 -3.94 16
26 C -0.18 -4.80 9.74 30.61 0.30 -4.50 16
27 H 0.25 14.75 8.31 -92.72 -0.77 13.98 16
28 H 0.37 19.84 7.33 -92.71 -0.68 19.16 16
29 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16
30 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16
31 H 0.41 11.29 8.60 -92.71 -0.80 10.50 16
32 H 0.12 1.90 8.10 -2.39 -0.02 1.88 16
33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
34 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16
35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16
36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16
38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.07 1.92 7.97 -2.38 -0.02 1.90 16
40 H 0.13 2.83 8.11 -2.39 -0.02 2.81 16
41 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16
42 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16
43 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16
44 H 0.09 2.98 5.03 -2.39 -0.01 2.97 16
Total: -1.00 -73.53 362.48 0.24 -73.30
By element:
Atomic # 1 Polarization: 42.74 SS G_CDS: -0.47 Total: 42.27 kcal
Atomic # 6 Polarization: -1.59 SS G_CDS: 4.99 Total: 3.40 kcal
Atomic # 7 Polarization: -115.98 SS G_CDS: -3.57 Total: -119.55 kcal
Atomic # 8 Polarization: -43.78 SS G_CDS: -2.73 Total: -46.52 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal
Total: -73.53 0.24 -73.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670470307.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.991 kcal
(2) G-P(sol) polarization free energy of solvation -73.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds