Wall clock time and date at job start Tue Mar 31 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29951 * 125.30327 * 2 1 4 4 O 1.41883 * 107.41512 * 179.97438 * 3 2 1 5 5 N 1.41876 * 106.38514 * 359.78273 * 4 3 2 6 6 C 1.29953 * 107.41361 * 0.36513 * 5 4 3 7 7 C 1.50700 * 125.30089 * 179.89846 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.69045 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.52998 * 109.47320 * 89.99349 * 11 10 8 13 13 O 1.42902 * 109.46765 * 65.00041 * 12 11 10 14 14 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 15 15 C 1.53002 * 109.47088 * 89.99979 * 14 10 8 16 16 N 1.46499 * 109.47479 * 179.97438 * 15 14 10 17 17 C 1.36935 * 120.00366 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00038 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47293 * 60.00043 * 21 19 17 23 23 H 1.48502 * 109.46697 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47104 * 299.99780 * 21 19 17 25 25 H 1.08997 * 109.46833 * 270.00404 * 1 2 3 26 26 H 1.08997 * 109.46860 * 30.00268 * 1 2 3 27 27 H 1.08999 * 109.46902 * 150.00299 * 1 2 3 28 28 H 1.09004 * 109.47210 * 149.69338 * 7 6 5 29 29 H 1.08994 * 109.47551 * 29.68990 * 7 6 5 30 30 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 31 31 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 32 32 H 1.08993 * 109.47026 * 185.00460 * 12 11 10 33 33 H 1.08999 * 109.47226 * 305.00909 * 12 11 10 34 34 H 0.96701 * 113.99649 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.47567 * 210.00057 * 14 10 8 36 36 H 1.09005 * 109.47076 * 330.00563 * 14 10 8 37 37 H 1.08999 * 109.47707 * 300.00330 * 15 14 10 38 38 H 1.09005 * 109.46685 * 60.00344 * 15 14 10 39 39 H 0.97004 * 119.99938 * 0.02562 * 16 15 14 40 40 H 0.96999 * 119.99574 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7935 0.0061 6 6 2.3213 -1.1498 0.0006 7 6 1.8210 -2.5713 0.0014 8 6 1.6542 -3.0459 -1.4192 9 8 1.9163 -2.3031 -2.3415 10 7 1.2196 -4.2978 -1.6649 11 6 0.9035 -5.1953 -0.5509 12 6 -0.5690 -5.0337 -0.1679 13 8 -1.3934 -5.4700 -1.2506 14 6 1.0633 -4.7612 -3.0458 15 6 2.3713 -5.3964 -3.5219 16 7 2.2148 -5.8603 -4.9026 17 6 3.2615 -6.4670 -5.5439 18 1 4.2024 -6.6039 -5.0316 19 6 3.1134 -6.9062 -6.8524 20 7 1.9669 -6.7389 -7.4768 21 14 4.5412 -7.7344 -7.7268 22 1 4.9369 -8.9561 -6.9811 23 1 4.1293 -8.1063 -9.1043 24 1 5.6925 -6.7987 -7.7907 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.8608 -2.6183 0.5152 29 1 2.5398 -3.2093 0.5155 30 1 1.0898 -6.2264 -0.8510 31 1 1.5309 -4.9469 0.3050 32 1 -0.7824 -5.6343 0.7163 33 1 -0.7757 -3.9852 0.0465 34 1 -2.3418 -5.3961 -1.0772 35 1 0.2626 -5.4993 -3.0930 36 1 0.8158 -3.9152 -3.6871 37 1 3.1719 -4.6583 -3.4747 38 1 2.6187 -6.2424 -2.8806 39 1 1.3696 -5.7377 -5.3626 40 1 1.8635 -7.0454 -8.3913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672697513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:19 Heat of formation + Delta-G solvation = 24.597643 kcal Electronic energy + Delta-G solvation = -24280.275914 eV Core-core repulsion = 20521.452803 eV Total energy + Delta-G solvation = -3758.823111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76775 -40.03937 -37.39217 -35.74862 -34.81795 -34.36304 -33.62872 -31.63446 -29.96889 -29.52779 -29.03005 -27.19571 -23.91217 -23.39387 -22.69893 -21.60738 -20.92130 -19.17118 -18.05981 -17.36091 -17.17287 -17.03203 -16.16744 -16.04448 -15.75271 -14.83184 -14.68853 -14.44963 -14.31414 -13.98344 -13.76369 -13.69492 -13.49752 -13.20881 -13.14637 -12.79799 -12.69201 -12.55338 -11.97156 -11.94406 -11.70898 -11.24399 -11.12344 -10.92105 -10.87482 -10.86088 -10.62136 -10.32903 -10.12089 -9.92219 -9.68319 -8.83032 -8.64105 -6.89320 -5.72189 -3.01315 0.33338 1.67232 2.40430 2.44184 2.80671 2.99016 3.47944 3.51926 3.53402 3.56765 3.92839 4.12295 4.29741 4.44473 4.64824 4.68762 4.74872 4.81995 4.87818 4.93094 4.99218 5.02341 5.16488 5.32826 5.47758 5.49782 5.57135 5.73175 5.88778 6.05609 6.18906 6.50125 6.70417 6.73990 6.92358 7.29726 7.41871 7.73407 8.04635 8.46349 9.57202 10.13606 10.48729 11.50679 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.003607 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.356263 B = 7761.794192 C = 8961.437422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.087 3.913 3 N -0.279 5.279 4 O 0.028 5.972 5 N -0.258 5.258 6 C 0.095 3.905 7 C -0.082 4.082 8 C 0.513 3.487 9 O -0.520 6.520 10 N -0.593 5.593 11 C 0.100 3.900 12 C 0.058 3.942 13 O -0.561 6.561 14 C 0.113 3.887 15 C 0.142 3.858 16 N -0.729 5.729 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.378 0.622 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 7.389 23.669 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 N -0.024 5.024 4 O -0.113 6.113 5 N -0.001 5.001 6 C -0.088 4.088 7 C -0.123 4.123 8 C 0.298 3.702 9 O -0.396 6.396 10 N -0.326 5.326 11 C -0.023 4.023 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.009 4.009 15 C 0.013 3.987 16 N -0.374 5.374 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.225 0.775 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.124 8.444 22.847 25.676 hybrid contribution -0.544 -0.830 -0.353 1.054 sum -8.668 7.614 22.494 25.280 Atomic orbital electron populations 1.20572 0.84324 1.05677 1.04468 1.24484 1.00250 0.88839 0.96017 1.79897 0.89139 1.19603 1.13794 1.93396 1.20106 1.13314 1.84531 1.79936 1.17314 0.91357 1.11461 1.23770 0.90087 0.97680 0.97299 1.20464 1.04633 0.89230 0.97938 1.20004 0.78118 0.82272 0.89830 1.90820 1.48737 1.54296 1.45720 1.47755 1.65056 1.11772 1.07979 1.21808 0.93723 0.96768 0.90034 1.22693 0.91652 0.98146 0.89676 1.86615 1.20747 1.88180 1.41063 1.21771 0.99248 1.00269 0.79640 1.20914 0.94429 0.95527 0.87785 1.42180 1.14778 1.71213 1.09213 1.19162 0.92520 1.30147 0.95169 0.91295 1.24738 0.97199 1.01967 0.96997 1.69655 1.23660 1.52473 1.12414 0.86244 0.81720 0.79305 0.78785 1.21262 1.21632 1.21246 0.88529 0.88928 0.88940 0.85763 0.85685 0.88440 0.88910 0.92489 0.93731 0.77485 0.89134 0.89960 0.96189 0.96542 0.78218 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.05 36.01 0.36 -0.17 16 2 C 0.09 0.92 7.19 -82.38 -0.59 0.32 16 3 N -0.28 -3.72 12.98 33.74 0.44 -3.28 16 4 O 0.03 0.43 13.71 12.02 0.16 0.60 16 5 N -0.26 -3.75 12.98 33.74 0.44 -3.31 16 6 C 0.10 1.09 5.68 -82.38 -0.47 0.62 16 7 C -0.08 -0.66 4.42 -29.03 -0.13 -0.79 16 8 C 0.51 6.73 7.67 -10.98 -0.08 6.65 16 9 O -0.52 -9.65 15.61 5.55 0.09 -9.56 16 10 N -0.59 -7.42 2.44 -173.68 -0.42 -7.84 16 11 C 0.10 0.79 5.62 -4.04 -0.02 0.77 16 12 C 0.06 0.33 7.39 37.16 0.27 0.60 16 13 O -0.56 -4.79 12.48 -35.23 -0.44 -5.23 16 14 C 0.11 1.92 5.34 -4.04 -0.02 1.90 16 15 C 0.14 3.05 6.58 -4.04 -0.03 3.02 16 16 N -0.73 -19.43 5.60 -59.91 -0.34 -19.77 16 17 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 21 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.46 7.78 -51.93 -0.40 0.06 16 28 H 0.12 0.43 6.93 -51.93 -0.36 0.07 16 29 H 0.13 0.76 7.40 -51.93 -0.38 0.37 16 30 H 0.10 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.09 0.41 6.43 -51.93 -0.33 0.08 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.18 7.32 -51.93 -0.38 -0.20 16 34 H 0.38 1.57 9.12 45.56 0.42 1.99 16 35 H 0.09 1.52 7.11 -51.93 -0.37 1.15 16 36 H 0.08 1.58 7.42 -51.93 -0.39 1.20 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -39.72 347.27 -4.68 -44.40 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.59 Total: 3.64 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.95 Total: 5.31 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.84 Total: -62.43 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.19 Total: -14.20 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.72 -4.68 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672697513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.999 kcal (2) G-P(sol) polarization free energy of solvation -39.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds