Wall clock time and date at job start Tue Mar 31 2020 04:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48502 * 109.46768 * 270.00040 * 3 2 1 5 5 H 1.48499 * 109.47134 * 29.99944 * 3 2 1 6 6 H 1.48502 * 109.46891 * 150.00478 * 3 2 1 7 7 C 1.38811 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99539 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00139 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47272 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.88893 * 51.11809 * 12 11 10 14 14 C 1.55155 * 111.03593 * 287.21261 * 12 11 10 15 15 C 1.54319 * 102.86319 * 206.21244 * 14 12 11 16 16 N 1.47017 * 107.27309 * 22.52700 * 15 14 12 17 17 C 1.34785 * 125.65007 * 180.96583 * 16 15 14 18 18 O 1.21278 * 120.00289 * 174.58372 * 17 16 15 19 19 C 1.50703 * 119.99499 * 354.58125 * 17 16 15 20 20 H 1.08996 * 109.52372 * 49.93271 * 19 17 16 21 21 C 1.53149 * 109.52435 * 289.73355 * 19 17 16 22 22 O 1.43070 * 109.14992 * 184.78630 * 21 19 17 23 23 C 1.43075 * 113.59052 * 57.95380 * 22 21 19 24 24 C 1.53140 * 109.15275 * 302.04685 * 23 22 21 25 25 O 1.43070 * 109.15061 * 55.31410 * 24 23 22 26 26 C 1.47429 * 108.70747 * 0.70352 * 16 15 14 27 27 H 0.96998 * 120.00115 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99528 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47022 * 59.99669 * 10 9 7 30 30 H 1.09004 * 109.47056 * 300.00256 * 10 9 7 31 31 H 1.08997 * 109.47055 * 59.99479 * 11 10 9 32 32 H 1.09004 * 109.46900 * 299.99918 * 11 10 9 33 33 H 1.08996 * 110.72254 * 324.77018 * 14 12 11 34 34 H 1.09008 * 110.71836 * 87.87066 * 14 12 11 35 35 H 1.08997 * 109.98795 * 263.04937 * 15 14 12 36 36 H 1.08999 * 109.77122 * 141.88617 * 15 14 12 37 37 H 1.09003 * 109.52408 * 304.69090 * 21 19 17 38 38 H 1.09000 * 109.52107 * 64.88775 * 21 19 17 39 39 H 1.09004 * 109.52296 * 182.14309 * 23 22 21 40 40 H 1.09002 * 109.57930 * 61.98366 * 23 22 21 41 41 H 1.09002 * 109.52381 * 295.40496 * 24 23 22 42 42 H 1.09000 * 109.52223 * 175.21377 * 24 23 22 43 43 H 1.08996 * 110.36845 * 94.93430 * 26 16 15 44 44 H 1.08997 * 110.36744 * 217.15163 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8198 -0.0012 12 6 1.8288 -6.1447 -0.0018 13 1 2.5767 -6.1621 0.7910 14 6 2.4784 -6.4121 -1.3852 15 6 2.5783 -7.9515 -1.4262 16 7 1.5806 -8.4789 -0.4839 17 6 1.3653 -9.7821 -0.2155 18 8 0.5819 -10.1009 0.6536 19 6 2.0981 -10.8430 -0.9957 20 1 3.1643 -10.6171 -1.0050 21 6 1.5686 -10.8794 -2.4322 22 8 2.1888 -11.9612 -3.1337 23 6 1.9756 -13.2371 -2.5224 24 6 2.5050 -13.2007 -1.0859 25 8 1.8849 -12.1189 -0.3844 26 6 0.8588 -7.3460 0.1236 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6847 -3.7146 0.8894 30 1 2.6847 -3.7146 -0.8905 31 1 0.4375 -4.7618 -0.8913 32 1 0.4368 -4.7622 0.8886 33 1 1.8414 -6.0418 -2.1885 34 1 3.4685 -5.9594 -1.4403 35 1 3.5767 -8.2682 -1.1246 36 1 2.3622 -8.3083 -2.4331 37 1 0.4885 -11.0255 -2.4188 38 1 1.8039 -9.9393 -2.9311 39 1 2.5056 -14.0045 -3.0866 40 1 0.9095 -13.4636 -2.5121 41 1 3.5852 -13.0547 -1.0993 42 1 2.2698 -14.1408 -0.5870 43 1 -0.0636 -7.1473 -0.4221 44 1 0.6417 -7.5526 1.1716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672745762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:57 Heat of formation + Delta-G solvation = -134.191368 kcal Electronic energy + Delta-G solvation = -24242.584140 eV Core-core repulsion = 20580.415764 eV Total energy + Delta-G solvation = -3662.168376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77395 -40.42064 -38.86876 -37.12710 -36.81109 -34.68741 -33.18972 -32.25117 -30.63717 -29.66643 -28.42035 -26.39006 -25.51859 -24.09118 -23.16261 -22.58743 -21.27189 -20.60669 -19.13388 -18.64815 -18.14532 -17.71383 -17.08620 -16.89750 -16.66813 -16.42035 -16.38146 -15.77837 -15.42075 -15.20982 -15.13132 -14.64020 -14.53482 -14.36371 -13.97549 -13.83567 -13.32837 -13.22118 -13.06952 -12.87392 -12.75234 -12.69686 -12.30693 -12.17989 -11.98327 -11.93863 -11.67683 -11.61785 -11.54097 -11.48547 -10.93664 -10.89893 -10.33544 -9.78317 -8.98150 -7.94278 -5.23116 1.30444 1.48348 1.50358 1.50953 1.58813 2.57181 2.59509 2.74252 3.26769 3.39556 3.40197 3.56311 3.64100 3.74773 3.80199 3.92154 4.07403 4.18320 4.19605 4.25597 4.33935 4.41470 4.46011 4.49249 4.60618 4.65072 4.75185 4.77423 4.78839 4.85851 4.89054 4.97723 5.05914 5.20157 5.30002 5.41172 5.47684 5.51656 5.81516 5.83614 6.28658 6.33210 6.92264 7.34359 8.12233 8.33563 9.29508 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.044943 B = 0.002271 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.866943 B =12328.284676 C =12586.055685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.751 5.751 10 C 0.153 3.847 11 C -0.102 4.102 12 C -0.085 4.085 13 H 0.088 0.912 14 C -0.123 4.123 15 C 0.092 3.908 16 N -0.612 5.612 17 C 0.532 3.468 18 O -0.571 6.571 19 C 0.048 3.952 20 H 0.115 0.885 21 C 0.042 3.958 22 O -0.381 6.381 23 C 0.016 3.984 24 C 0.018 3.982 25 O -0.387 6.387 26 C 0.110 3.890 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.016 0.984 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.074 0.926 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.354 -27.826 -7.651 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.104 4.104 13 H 0.106 0.894 14 C -0.161 4.161 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.320 3.680 18 O -0.450 6.450 19 C -0.014 4.014 20 H 0.132 0.868 21 C -0.036 4.036 22 O -0.299 6.299 23 C -0.060 4.060 24 C -0.058 4.058 25 O -0.306 6.306 26 C -0.012 4.012 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.106 -28.012 -7.181 30.032 hybrid contribution -0.412 1.111 0.423 1.258 sum 7.694 -26.900 -6.758 28.784 Atomic orbital electron populations 1.69821 1.06675 1.26072 1.59662 1.25616 0.96444 1.01284 1.03856 0.85118 0.77673 0.79337 0.77512 1.21207 1.22372 1.19353 1.19662 0.91578 0.85389 1.40961 0.90462 1.42655 1.05725 1.01528 1.89458 1.20806 0.94092 0.84456 0.97907 1.21496 0.97844 0.92623 1.02114 1.22170 0.97095 0.91852 0.99332 0.89382 1.22760 1.03247 0.93581 0.96472 1.22497 0.92214 0.94754 0.93488 1.48485 1.38391 1.04134 1.43582 1.20092 0.82285 0.82436 0.83209 1.90714 1.38477 1.81727 1.34071 1.22545 1.01093 0.84419 0.93300 0.86784 1.23156 0.97426 0.93049 0.89934 1.88121 1.75545 1.15814 1.50436 1.23525 1.02114 0.86105 0.94277 1.23622 0.98287 0.90667 0.93189 1.88187 1.76500 1.14715 1.51190 1.22298 0.95622 0.84607 0.98653 0.94041 0.79579 0.96578 0.95066 0.91481 0.92575 0.89779 0.88253 0.88967 0.88663 0.92537 0.84915 0.84536 0.92116 0.90470 0.85453 0.90793 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -37.83 5.60 -343.45 -1.92 -39.75 16 10 C 0.15 5.72 6.16 86.38 0.53 6.26 16 11 C -0.10 -2.97 4.84 30.59 0.15 -2.82 16 12 C -0.08 -1.83 3.00 -9.40 -0.03 -1.86 16 13 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 14 C -0.12 -1.96 5.91 31.78 0.19 -1.77 16 15 C 0.09 1.18 6.17 86.73 0.54 1.72 16 16 N -0.61 -12.48 3.33 -811.81 -2.70 -15.18 16 17 C 0.53 13.27 7.17 87.66 0.63 13.90 16 18 O -0.57 -20.10 16.76 15.78 0.26 -19.84 16 19 C 0.05 0.88 2.65 29.90 0.08 0.95 16 20 H 0.11 1.55 7.91 -2.39 -0.02 1.53 16 21 C 0.04 0.63 6.22 72.03 0.45 1.07 16 22 O -0.38 -5.68 10.85 -136.00 -1.48 -7.15 16 23 C 0.02 0.17 7.05 72.03 0.51 0.68 16 24 C 0.02 0.22 7.05 72.03 0.51 0.73 16 25 O -0.39 -8.45 10.05 -122.97 -1.24 -9.69 16 26 C 0.11 2.53 6.40 86.85 0.56 3.09 16 27 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.37 20.06 7.67 -92.71 -0.71 19.35 16 29 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.03 1.11 7.75 -2.38 -0.02 1.09 16 31 H 0.07 1.94 7.97 -2.39 -0.02 1.92 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 1.38 7.92 -2.39 -0.02 1.36 16 34 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 0.87 8.11 -2.39 -0.02 0.86 16 36 H 0.10 0.81 6.02 -2.39 -0.01 0.80 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.38 5.83 -2.39 -0.01 1.37 16 39 H 0.14 0.66 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 44 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 Total: -1.00 -76.53 353.24 0.93 -75.61 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.28 Total: 22.41 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.41 Total: 5.09 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.34 Total: -114.35 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.45 Total: -36.68 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.53 0.93 -75.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672745762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.586 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds