Wall clock time and date at job start Tue Mar 31 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48492 * 109.47052 * 269.99785 * 3 2 1 5 5 H 1.48503 * 109.46929 * 29.99931 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99991 * 3 2 1 7 7 C 1.38810 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00159 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99921 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99900 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47207 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.91684 * 51.09557 * 12 11 10 14 14 C 1.55154 * 111.00283 * 287.19575 * 12 11 10 15 15 C 1.54314 * 102.86082 * 206.23034 * 14 12 11 16 16 N 1.47016 * 107.27719 * 22.52331 * 15 14 12 17 17 C 1.34777 * 125.64702 * 180.96896 * 16 15 14 18 18 O 1.21287 * 119.99811 * 184.82727 * 17 16 15 19 19 C 1.50697 * 120.00295 * 4.82186 * 17 16 15 20 20 H 1.08997 * 109.57701 * 310.39758 * 19 17 16 21 21 C 1.53150 * 109.52049 * 70.55926 * 19 17 16 22 22 O 1.43080 * 109.20289 * 175.24734 * 21 19 17 23 23 C 1.43070 * 113.59327 * 302.01568 * 22 21 19 24 24 C 1.53142 * 109.15406 * 57.95378 * 23 22 21 25 25 O 1.43080 * 109.14792 * 304.68842 * 24 23 22 26 26 C 1.47423 * 108.70309 * 0.70862 * 16 15 14 27 27 H 0.97003 * 120.00038 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99747 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47532 * 59.99864 * 10 9 7 30 30 H 1.09007 * 109.47003 * 299.99936 * 10 9 7 31 31 H 1.08997 * 109.47072 * 59.99527 * 11 10 9 32 32 H 1.09005 * 109.46591 * 300.00001 * 11 10 9 33 33 H 1.09001 * 110.71960 * 324.78393 * 14 12 11 34 34 H 1.08998 * 110.72011 * 87.88397 * 14 12 11 35 35 H 1.09001 * 109.98682 * 263.04527 * 15 14 12 36 36 H 1.09003 * 109.77508 * 141.88606 * 15 14 12 37 37 H 1.08999 * 109.52463 * 55.31070 * 21 19 17 38 38 H 1.09000 * 109.52179 * 295.17948 * 21 19 17 39 39 H 1.08995 * 109.52516 * 177.85472 * 23 22 21 40 40 H 1.09004 * 109.52094 * 298.04811 * 23 22 21 41 41 H 1.09000 * 109.52676 * 64.58392 * 24 23 22 42 42 H 1.09001 * 109.52604 * 184.72632 * 24 23 22 43 43 H 1.09000 * 110.37020 * 94.93474 * 26 16 15 44 44 H 1.09005 * 110.36255 * 217.15128 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0024 12 6 6.3815 -3.5162 0.0030 13 1 6.0230 -4.1729 -0.7896 14 6 6.2875 -4.2119 1.3866 15 6 7.5708 -5.0679 1.4286 16 7 8.5268 -4.4679 0.4865 17 6 9.7631 -4.9332 0.2190 18 8 10.5012 -4.3078 -0.5125 19 6 10.2285 -6.2302 0.8290 20 1 10.0354 -6.2194 1.9017 21 6 9.4751 -7.3978 0.1850 22 8 9.9993 -8.6306 0.6879 23 6 11.4016 -8.7935 0.4560 24 6 12.1563 -7.6269 1.1001 25 8 11.6322 -6.3942 0.5972 26 6 7.9068 -3.2767 -0.1217 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8909 31 1 5.8790 -1.6200 0.8927 32 1 5.8804 -1.6192 -0.8872 33 1 6.2849 -3.4748 2.1896 34 1 5.4005 -4.8431 1.4415 35 1 7.3462 -6.0911 1.1274 36 1 7.9874 -5.0588 2.4358 37 1 9.6034 -7.3617 -0.8968 38 1 8.4152 -7.3262 0.4289 39 1 11.7371 -9.7321 0.8970 40 1 11.5946 -8.8044 -0.6167 41 1 12.0280 -7.6629 2.1819 42 1 13.2162 -7.6997 0.8562 43 1 8.1956 -2.3783 0.4237 44 1 8.1948 -3.1925 -1.1697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672745765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:06 Heat of formation + Delta-G solvation = -105.367486 kcal Electronic energy + Delta-G solvation = -24328.598088 eV Core-core repulsion = 20667.679610 eV Total energy + Delta-G solvation = -3660.918479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01243 -39.69085 -37.93559 -36.43351 -35.39484 -33.33639 -32.15644 -31.11443 -29.82134 -28.94061 -27.48720 -25.59665 -23.93028 -23.10379 -22.14038 -21.36171 -20.36853 -19.82762 -17.88623 -17.60099 -17.26410 -17.09118 -16.71901 -16.03690 -15.75928 -15.60428 -14.82305 -14.61322 -14.32452 -14.19001 -13.92574 -13.87898 -13.39056 -13.10693 -12.97194 -12.89438 -12.70739 -12.22854 -12.11206 -11.86059 -11.64313 -11.35409 -11.30293 -11.07825 -10.90957 -10.75146 -10.54787 -10.47389 -10.12819 -10.06035 -9.70370 -9.60449 -8.95323 -8.90419 -7.24602 -5.78106 -3.13817 2.18299 2.27531 3.14924 3.36744 3.37013 3.39745 3.44814 3.97015 4.03690 4.33740 4.35874 4.44038 4.45712 4.53868 4.58175 4.65763 4.69936 4.79183 4.99376 5.04389 5.14078 5.21670 5.22741 5.26661 5.41682 5.45872 5.54876 5.65158 5.67484 5.75618 5.88225 5.94569 6.02162 6.09483 6.24227 6.37223 6.41835 6.69595 6.73798 7.14025 7.80374 7.98094 8.40994 9.20221 9.92699 10.12214 11.40265 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.002443 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.574839 B =11456.551795 C =11900.940729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.159 3.841 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.616 5.616 17 C 0.537 3.463 18 O -0.516 6.516 19 C 0.043 3.957 20 H 0.093 0.907 21 C 0.036 3.964 22 O -0.372 6.372 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.352 6.352 26 C 0.111 3.889 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.756 -18.003 4.043 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.404 5.404 10 C 0.032 3.968 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.031 4.031 16 N -0.352 5.352 17 C 0.323 3.677 18 O -0.390 6.390 19 C -0.019 4.019 20 H 0.111 0.889 21 C -0.041 4.041 22 O -0.290 6.290 23 C -0.057 4.057 24 C -0.054 4.054 25 O -0.270 6.270 26 C -0.010 4.010 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.022 -17.786 3.632 30.109 hybrid contribution 0.549 1.181 0.128 1.309 sum 24.571 -16.605 3.760 29.893 Atomic orbital electron populations 1.69705 1.05111 1.25847 1.57578 1.24694 0.95273 0.97287 1.02045 0.86524 0.79174 0.84881 0.77801 1.21061 1.21729 1.20328 1.19059 0.80660 0.94726 1.43021 0.89244 1.42729 1.04095 1.02338 1.91221 1.20601 0.88307 0.89304 0.98607 1.21727 0.96381 0.95239 1.02496 1.22342 0.93049 0.98255 0.97740 0.89291 1.22757 0.96245 0.99363 0.98122 1.22288 0.90080 0.97700 0.92984 1.48425 1.13942 1.29240 1.43600 1.19500 0.80552 0.85897 0.81717 1.90751 1.52870 1.58614 1.36771 1.22538 0.84483 0.94113 1.00772 0.88948 1.23179 0.98936 0.83063 0.98926 1.88138 1.22929 1.37122 1.80813 1.23338 0.81705 0.99473 1.01207 1.23362 0.99375 0.83942 0.98677 1.88249 1.20042 1.37961 1.80780 1.22390 0.92142 0.87303 0.99187 0.93052 0.80685 0.95603 0.95481 0.91545 0.91465 0.89883 0.89180 0.91073 0.91089 0.91261 0.86783 0.87280 0.91694 0.91771 0.87048 0.90939 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.74 5.41 -59.91 -0.32 -18.06 16 10 C 0.16 2.85 6.16 -4.04 -0.02 2.83 16 11 C -0.12 -1.62 4.84 -26.73 -0.13 -1.75 16 12 C -0.09 -0.99 3.00 -88.47 -0.27 -1.25 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.11 5.91 -24.90 -0.15 -1.26 16 15 C 0.09 0.70 6.21 -3.07 -0.02 0.68 16 16 N -0.62 -6.38 3.33 -170.53 -0.57 -6.95 16 17 C 0.54 6.60 7.17 -10.99 -0.08 6.52 16 18 O -0.52 -8.57 16.84 -14.03 -0.24 -8.81 16 19 C 0.04 0.41 2.65 -27.81 -0.07 0.34 16 20 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 21 C 0.04 0.30 6.21 37.23 0.23 0.53 16 22 O -0.37 -3.15 10.85 -48.80 -0.53 -3.68 16 23 C 0.02 0.12 7.05 37.23 0.26 0.38 16 24 C 0.02 0.16 7.05 37.23 0.26 0.42 16 25 O -0.35 -3.89 10.06 -62.39 -0.63 -4.52 16 26 C 0.11 1.22 6.36 -2.53 -0.02 1.20 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.36 8.23 5.53 -40.82 -0.23 8.00 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16 31 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.42 5.93 -51.93 -0.31 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 0.74 5.79 -51.93 -0.30 0.44 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 44 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -35.75 350.24 -8.33 -44.08 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.13 Total: 2.32 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.25 Total: 1.56 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.12 Total: -53.55 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.39 Total: -17.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.75 -8.33 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672745765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.291 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds