Wall clock time and date at job start Tue Mar 31 2020 04:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48492 * 109.47052 * 269.99785 * 3 2 1 5 5 H 1.48503 * 109.46929 * 29.99931 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99991 * 3 2 1 7 7 C 1.38810 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00159 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99921 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99900 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47207 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.91684 * 51.09557 * 12 11 10 14 14 C 1.55154 * 111.00283 * 287.19575 * 12 11 10 15 15 C 1.54314 * 102.86082 * 206.23034 * 14 12 11 16 16 N 1.47016 * 107.27719 * 22.52331 * 15 14 12 17 17 C 1.34777 * 125.64702 * 180.96896 * 16 15 14 18 18 O 1.21287 * 119.99811 * 184.82727 * 17 16 15 19 19 C 1.50697 * 120.00295 * 4.82186 * 17 16 15 20 20 H 1.08997 * 109.57701 * 310.39758 * 19 17 16 21 21 C 1.53150 * 109.52049 * 70.55926 * 19 17 16 22 22 O 1.43080 * 109.20289 * 175.24734 * 21 19 17 23 23 C 1.43070 * 113.59327 * 302.01568 * 22 21 19 24 24 C 1.53142 * 109.15406 * 57.95378 * 23 22 21 25 25 O 1.43080 * 109.14792 * 304.68842 * 24 23 22 26 26 C 1.47423 * 108.70309 * 0.70862 * 16 15 14 27 27 H 0.97003 * 120.00038 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99747 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47532 * 59.99864 * 10 9 7 30 30 H 1.09007 * 109.47003 * 299.99936 * 10 9 7 31 31 H 1.08997 * 109.47072 * 59.99527 * 11 10 9 32 32 H 1.09005 * 109.46591 * 300.00001 * 11 10 9 33 33 H 1.09001 * 110.71960 * 324.78393 * 14 12 11 34 34 H 1.08998 * 110.72011 * 87.88397 * 14 12 11 35 35 H 1.09001 * 109.98682 * 263.04527 * 15 14 12 36 36 H 1.09003 * 109.77508 * 141.88606 * 15 14 12 37 37 H 1.08999 * 109.52463 * 55.31070 * 21 19 17 38 38 H 1.09000 * 109.52179 * 295.17948 * 21 19 17 39 39 H 1.08995 * 109.52516 * 177.85472 * 23 22 21 40 40 H 1.09004 * 109.52094 * 298.04811 * 23 22 21 41 41 H 1.09000 * 109.52676 * 64.58392 * 24 23 22 42 42 H 1.09001 * 109.52604 * 184.72632 * 24 23 22 43 43 H 1.09000 * 110.37020 * 94.93474 * 26 16 15 44 44 H 1.09005 * 110.36255 * 217.15128 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0024 12 6 6.3815 -3.5162 0.0030 13 1 6.0230 -4.1729 -0.7896 14 6 6.2875 -4.2119 1.3866 15 6 7.5708 -5.0679 1.4286 16 7 8.5268 -4.4679 0.4865 17 6 9.7631 -4.9332 0.2190 18 8 10.5012 -4.3078 -0.5125 19 6 10.2285 -6.2302 0.8290 20 1 10.0354 -6.2194 1.9017 21 6 9.4751 -7.3978 0.1850 22 8 9.9993 -8.6306 0.6879 23 6 11.4016 -8.7935 0.4560 24 6 12.1563 -7.6269 1.1001 25 8 11.6322 -6.3942 0.5972 26 6 7.9068 -3.2767 -0.1217 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8909 31 1 5.8790 -1.6200 0.8927 32 1 5.8804 -1.6192 -0.8872 33 1 6.2849 -3.4748 2.1896 34 1 5.4005 -4.8431 1.4415 35 1 7.3462 -6.0911 1.1274 36 1 7.9874 -5.0588 2.4358 37 1 9.6034 -7.3617 -0.8968 38 1 8.4152 -7.3262 0.4289 39 1 11.7371 -9.7321 0.8970 40 1 11.5946 -8.8044 -0.6167 41 1 12.0280 -7.6629 2.1819 42 1 13.2162 -7.6997 0.8562 43 1 8.1956 -2.3783 0.4237 44 1 8.1948 -3.1925 -1.1697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672745765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:05 Heat of formation + Delta-G solvation = -131.074213 kcal Electronic energy + Delta-G solvation = -24329.712816 eV Core-core repulsion = 20667.679610 eV Total energy + Delta-G solvation = -3662.033206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77315 -40.42013 -38.88735 -37.15462 -36.92990 -34.69318 -33.35157 -32.46635 -30.73537 -29.75980 -28.57261 -26.37355 -25.32056 -24.04327 -23.12345 -22.59666 -21.32987 -20.64370 -19.61548 -18.62498 -17.97524 -17.78322 -17.39511 -16.73657 -16.61123 -16.52417 -16.32062 -15.85481 -15.67928 -15.07333 -14.92815 -14.76044 -14.56079 -14.33275 -14.18194 -13.74914 -13.64137 -13.39810 -13.10411 -12.92732 -12.80913 -12.65474 -12.37629 -12.08536 -11.98370 -11.88133 -11.73695 -11.67166 -11.52921 -11.48655 -10.95456 -10.93779 -10.34148 -9.78755 -9.27527 -8.02028 -5.35321 1.29935 1.39048 1.42514 1.49619 1.50579 2.49432 2.59204 2.73328 3.26232 3.29751 3.38043 3.49361 3.62844 3.72835 3.76948 3.91620 3.98450 4.06705 4.17912 4.24895 4.33767 4.41473 4.44097 4.48975 4.55673 4.62890 4.74820 4.76139 4.77028 4.85680 4.87544 4.97588 5.04930 5.20322 5.28324 5.38420 5.46618 5.77380 5.80740 5.83228 6.22472 6.32233 6.91766 7.09618 7.86969 8.04625 9.19425 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.002443 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.574839 B =11456.551795 C =11900.940729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.249 1.249 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.763 5.763 10 C 0.155 3.845 11 C -0.108 4.108 12 C -0.085 4.085 13 H 0.092 0.908 14 C -0.125 4.125 15 C 0.091 3.909 16 N -0.612 5.612 17 C 0.532 3.468 18 O -0.570 6.570 19 C 0.047 3.953 20 H 0.114 0.886 21 C 0.041 3.959 22 O -0.381 6.381 23 C 0.016 3.984 24 C 0.019 3.981 25 O -0.387 6.387 26 C 0.111 3.889 27 H 0.258 0.742 28 H 0.366 0.634 29 H 0.022 0.978 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.558 -18.925 5.266 32.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.173 1.173 7 C -0.365 4.365 8 H 0.075 0.925 9 N -0.409 5.409 10 C 0.029 3.971 11 C -0.146 4.146 12 C -0.105 4.105 13 H 0.111 0.889 14 C -0.162 4.162 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.320 3.680 18 O -0.449 6.449 19 C -0.014 4.014 20 H 0.132 0.868 21 C -0.036 4.036 22 O -0.300 6.300 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.306 6.306 26 C -0.011 4.011 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.852 -18.760 4.880 32.312 hybrid contribution -0.021 1.341 -0.253 1.364 sum 25.831 -17.419 4.628 31.498 Atomic orbital electron populations 1.69890 1.07163 1.26687 1.59800 1.25560 0.96183 1.01432 1.02758 0.85381 0.78732 0.79454 0.78051 1.20611 1.22318 1.17338 1.19063 0.82860 0.93475 1.41131 0.92452 1.42796 1.02527 1.04565 1.91017 1.20802 0.90681 0.87120 0.98486 1.21574 0.93321 0.96957 1.02750 1.22188 0.92158 0.96882 0.99278 0.88934 1.22771 0.97275 0.99541 0.96662 1.22497 0.88810 0.98306 0.93422 1.48479 1.13808 1.28874 1.43434 1.20048 0.80465 0.86451 0.80995 1.90717 1.54518 1.60338 1.39346 1.22569 0.84319 0.92885 1.01640 0.86834 1.23160 0.99720 0.82635 0.98092 1.88124 1.24124 1.36906 1.80808 1.23526 0.80689 1.00514 1.01297 1.23616 1.00204 0.82543 0.99375 1.88204 1.20769 1.40098 1.81535 1.22305 0.92367 0.87780 0.98629 0.93369 0.80145 0.95976 0.94872 0.90998 0.91594 0.89887 0.88262 0.88831 0.89059 0.92528 0.84949 0.84580 0.92117 0.90502 0.85438 0.91052 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.11 13.97 21.65 0.30 -62.81 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 45.19 27.74 68.60 1.90 47.10 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.47 6.52 99.48 0.65 -9.83 16 7 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 9 N -0.76 -34.73 5.41 -343.44 -1.86 -36.58 16 10 C 0.15 5.33 6.16 86.38 0.53 5.86 16 11 C -0.11 -2.68 4.84 30.60 0.15 -2.53 16 12 C -0.09 -1.61 3.00 -9.40 -0.03 -1.64 16 13 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 14 C -0.12 -1.80 5.91 31.78 0.19 -1.62 16 15 C 0.09 1.07 6.21 86.73 0.54 1.61 16 16 N -0.61 -11.57 3.33 -811.82 -2.70 -14.27 16 17 C 0.53 12.65 7.17 87.66 0.63 13.28 16 18 O -0.57 -19.29 16.84 15.68 0.26 -19.03 16 19 C 0.05 0.83 2.65 29.90 0.08 0.91 16 20 H 0.11 1.47 7.94 -2.39 -0.02 1.45 16 21 C 0.04 0.60 6.21 72.03 0.45 1.05 16 22 O -0.38 -5.58 10.85 -136.00 -1.48 -7.06 16 23 C 0.02 0.17 7.05 72.03 0.51 0.67 16 24 C 0.02 0.22 7.05 72.03 0.51 0.72 16 25 O -0.39 -8.19 10.06 -123.01 -1.24 -9.43 16 26 C 0.11 2.28 6.36 86.85 0.55 2.84 16 27 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.37 15.82 5.53 -92.71 -0.51 15.31 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.03 1.12 7.75 -2.38 -0.02 1.10 16 31 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.08 1.24 7.91 -2.39 -0.02 1.22 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 0.74 5.93 -2.39 -0.01 0.72 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 1.33 5.79 -2.39 -0.01 1.32 16 39 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 44 H 0.07 1.56 8.09 -2.38 -0.02 1.54 16 Total: -1.00 -79.16 350.24 1.07 -78.09 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.42 Total: 18.76 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.45 Total: 5.23 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -4.26 Total: -113.66 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.45 Total: -35.52 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.10 kcal Total: -79.16 1.07 -78.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672745765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.982 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds