Wall clock time and date at job start Tue Mar 31 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99561 * 2 1 4 4 H 1.48504 * 109.47077 * 94.09781 * 3 2 1 5 5 H 1.48496 * 109.46673 * 214.09577 * 3 2 1 6 6 H 1.48496 * 109.47151 * 334.09661 * 3 2 1 7 7 C 1.38811 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 15.90143 * 7 2 1 9 9 N 1.36930 * 120.00362 * 195.90938 * 7 2 1 10 10 C 1.47161 * 120.98159 * 31.32273 * 9 7 2 11 11 C 1.53298 * 108.38218 * 129.44793 * 10 9 7 12 12 O 1.42955 * 109.22332 * 52.29938 * 11 10 9 13 13 C 1.42960 * 114.17324 * 297.42072 * 12 11 10 14 14 C 1.47148 * 120.98409 * 211.04844 * 9 7 2 15 15 H 1.08996 * 109.68687 * 110.83089 * 14 9 7 16 16 C 1.53007 * 109.68082 * 350.27341 * 14 9 7 17 17 N 1.46497 * 109.46627 * 60.58007 * 16 14 9 18 18 C 1.34778 * 119.99851 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00068 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.47095 * 179.97438 * 20 18 17 22 22 O 1.42905 * 112.84563 * 55.33710 * 21 20 18 23 23 C 1.53776 * 113.61867 * 284.13807 * 21 20 18 24 24 C 1.53949 * 87.02139 * 220.04572 * 23 21 20 25 25 C 1.53779 * 113.61474 * 186.53004 * 21 20 18 26 26 H 0.96999 * 120.00534 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.67995 * 249.16722 * 10 9 7 28 28 H 1.08990 * 109.67852 * 9.68485 * 10 9 7 29 29 H 1.08994 * 109.51102 * 172.22913 * 11 10 9 30 30 H 1.09005 * 109.50664 * 292.32525 * 11 10 9 31 31 H 1.08995 * 109.51643 * 182.50857 * 13 12 11 32 32 H 1.09005 * 109.51141 * 302.65661 * 13 12 11 33 33 H 1.08998 * 109.47237 * 180.58021 * 16 14 9 34 34 H 1.09001 * 109.46982 * 300.58314 * 16 14 9 35 35 H 0.97001 * 120.00285 * 359.97438 * 17 16 14 36 36 H 1.08998 * 109.47469 * 300.00263 * 20 18 17 37 37 H 1.09001 * 109.46827 * 60.00603 * 20 18 17 38 38 H 0.96693 * 114.00155 * 309.66278 * 22 21 20 39 39 H 1.08998 * 113.61638 * 334.57159 * 23 21 20 40 40 H 1.09008 * 113.61264 * 105.46738 * 23 21 20 41 41 H 1.08996 * 113.53931 * 270.81041 * 24 23 21 42 42 H 1.09003 * 113.66488 * 139.93502 * 24 23 21 43 43 H 1.08997 * 113.61905 * 254.53466 * 25 21 20 44 44 H 1.09006 * 113.61414 * 25.35265 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5842 1.9965 1.3965 5 1 3.5016 1.4668 -0.7848 6 1 1.4069 2.6762 -0.6116 7 6 2.0104 -1.2021 0.0005 8 1 1.5014 -2.1196 -0.2553 9 7 3.3403 -1.2246 0.3256 10 6 3.9025 -0.2592 1.2835 11 6 4.7042 -1.0334 2.3360 12 8 5.6385 -1.8924 1.6780 13 6 5.0344 -2.8940 0.8560 14 6 4.2485 -2.2187 -0.2680 15 1 4.9402 -1.7234 -0.9494 16 6 3.4366 -3.2684 -1.0296 17 7 2.6801 -2.6170 -2.1018 18 6 1.8887 -3.3502 -2.9096 19 8 1.8025 -4.5492 -2.7486 20 6 1.1101 -2.6801 -4.0122 21 6 0.2993 -3.7299 -4.7747 22 8 -0.5560 -4.4960 -3.9239 23 6 1.1456 -4.5871 -5.7306 24 6 -0.0229 -4.4853 -6.7277 25 6 -0.4091 -3.1749 -6.0217 26 1 -0.4851 0.8400 0.0004 27 1 4.5587 0.4367 0.7609 28 1 3.0952 0.2904 1.7672 29 1 5.2415 -0.3313 2.9734 30 1 4.0249 -1.6308 2.9441 31 1 5.8093 -3.5305 0.4288 32 1 4.3565 -3.4990 1.4582 33 1 4.1117 -4.0085 -1.4592 34 1 2.7460 -3.7606 -0.3449 35 1 2.7488 -1.6580 -2.2304 36 1 0.4346 -1.9405 -3.5823 37 1 1.8005 -2.1872 -4.6967 38 1 -0.1107 -4.8673 -3.1500 39 1 2.0550 -4.0924 -6.0715 40 1 1.3239 -5.5993 -5.3674 41 1 -0.7629 -5.2773 -6.6135 42 1 0.2947 -4.3473 -7.7613 43 1 -1.4840 -3.0485 -5.8933 44 1 0.0737 -2.2923 -6.4416 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673043953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:47 Heat of formation + Delta-G solvation = -77.860154 kcal Electronic energy + Delta-G solvation = -25895.333196 eV Core-core repulsion = 22235.607524 eV Total energy + Delta-G solvation = -3659.725671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11354 -39.04998 -38.08113 -35.52189 -34.19551 -33.65910 -31.90550 -31.23349 -29.85622 -27.57515 -25.66274 -25.51123 -23.52499 -23.15751 -22.10900 -20.09648 -19.73869 -19.41901 -17.17656 -16.43938 -16.34475 -16.05584 -15.85202 -15.35149 -15.16186 -14.92142 -14.62766 -14.45334 -14.31862 -14.01126 -13.63661 -13.17660 -12.76533 -12.63846 -12.55888 -12.16936 -12.03373 -11.90875 -11.61887 -11.26502 -11.19374 -11.03361 -10.82655 -10.75011 -10.60444 -10.42064 -10.24621 -9.88001 -9.70086 -9.52170 -9.39657 -9.19365 -8.75513 -8.37214 -7.08718 -6.10407 -3.55645 3.09441 3.17170 3.33865 3.35683 3.70370 4.23630 4.34125 4.35109 4.58770 4.70836 4.81310 4.95927 4.97384 5.14532 5.37041 5.40666 5.48384 5.52450 5.63361 5.69513 5.73724 5.75944 5.80920 5.84215 5.85520 5.96523 5.97552 6.01288 6.06225 6.17428 6.22475 6.29796 6.41510 6.45191 6.47697 6.65930 7.00178 7.54190 7.74566 8.08746 8.12741 8.18255 8.71040 8.76285 9.51130 9.88542 11.03141 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.004898 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.520583 B = 5715.247732 C = 6772.898293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.303 1.303 7 C -0.270 4.270 8 H 0.097 0.903 9 N -0.606 5.606 10 C 0.089 3.911 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.045 0.955 16 C 0.136 3.864 17 N -0.691 5.691 18 C 0.518 3.482 19 O -0.569 6.569 20 C -0.164 4.164 21 C 0.134 3.866 22 O -0.549 6.549 23 C -0.160 4.160 24 C -0.135 4.135 25 C -0.130 4.130 26 H 0.265 0.735 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.413 0.587 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.391 0.609 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 -3.929 -7.120 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.231 1.231 7 C -0.398 4.398 8 H 0.114 0.886 9 N -0.333 5.333 10 C -0.036 4.036 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.063 0.937 16 C 0.011 3.989 17 N -0.341 5.341 18 C 0.305 3.695 19 O -0.451 6.451 20 C -0.204 4.204 21 C 0.092 3.908 22 O -0.361 6.361 23 C -0.198 4.198 24 C -0.173 4.173 25 C -0.167 4.167 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.245 0.755 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.529 -4.479 -7.409 10.273 hybrid contribution 0.583 1.542 0.549 1.738 sum 6.113 -2.937 -6.860 9.646 Atomic orbital electron populations 1.69791 1.05590 1.26750 1.52029 1.25359 0.95170 0.97484 0.98968 0.87017 0.79404 0.84582 0.77625 1.21347 1.19780 1.23099 1.18999 0.82370 0.94688 1.43726 0.88588 1.44419 1.06053 1.35741 1.47109 1.22094 0.97232 0.92831 0.91426 1.23064 0.92201 0.93254 0.94703 1.87828 1.33397 1.46097 1.63332 1.22836 0.97071 0.90041 0.92533 1.21368 0.92061 0.90875 0.93590 0.93705 1.21145 0.94398 0.94213 0.89117 1.45973 1.45043 1.12274 1.30780 1.20454 0.79250 0.87080 0.82752 1.90499 1.66106 1.15088 1.73413 1.22303 1.00124 1.00519 0.97490 1.21702 0.90125 0.90258 0.88701 1.86292 1.39023 1.70197 1.40569 1.23583 0.97228 1.01662 0.97298 1.22771 0.98659 0.97999 0.97823 1.23055 1.01657 0.97616 0.94370 0.92512 0.94880 0.89898 0.89739 0.92989 0.89353 0.92947 0.92084 0.91108 0.74954 0.87430 0.88514 0.75465 0.90119 0.90745 0.90028 0.91757 0.90582 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 13.97 55.49 0.78 -24.62 16 2 C 0.03 0.80 5.30 -17.43 -0.09 0.71 16 3 Si 0.88 20.50 24.27 -169.99 -4.13 16.37 16 4 H -0.29 -6.49 6.42 56.52 0.36 -6.12 16 5 H -0.27 -6.21 6.79 56.52 0.38 -5.82 16 6 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.27 -6.58 7.51 -15.06 -0.11 -6.70 16 8 H 0.10 2.56 6.01 -52.49 -0.32 2.25 16 9 N -0.61 -12.83 2.78 -164.54 -0.46 -13.29 16 10 C 0.09 1.80 4.38 -3.53 -0.02 1.79 16 11 C 0.05 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -6.77 10.74 -35.23 -0.38 -7.15 16 13 C 0.05 0.86 6.27 37.10 0.23 1.09 16 14 C 0.13 2.26 3.19 -67.63 -0.22 2.04 16 15 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.14 2.34 4.44 -4.04 -0.02 2.32 16 17 N -0.69 -12.21 3.77 -60.29 -0.23 -12.44 16 18 C 0.52 9.07 7.57 -10.99 -0.08 8.99 16 19 O -0.57 -10.95 13.63 -13.62 -0.19 -11.14 16 20 C -0.16 -2.48 5.33 -27.88 -0.15 -2.63 16 21 C 0.13 2.00 1.09 -89.81 -0.10 1.90 16 22 O -0.55 -9.71 13.40 -54.40 -0.73 -10.43 16 23 C -0.16 -2.10 7.08 -25.83 -0.18 -2.29 16 24 C -0.14 -1.58 8.02 -25.83 -0.21 -1.79 16 25 C -0.13 -1.62 7.48 -25.92 -0.19 -1.81 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.68 6.89 -51.93 -0.36 0.32 16 28 H 0.08 1.80 4.85 -51.93 -0.25 1.55 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 35 H 0.41 7.54 7.31 -40.82 -0.30 7.24 16 36 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.39 7.10 6.33 45.56 0.29 7.39 16 39 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -29.11 338.56 -7.53 -36.64 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -6.43 Total: 16.27 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.88 Total: 4.68 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.09 Total: -50.35 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.29 Total: -28.72 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.13 Total: 16.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.11 -7.53 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673043953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.219 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds