Wall clock time and date at job start Tue Mar 31 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99561 * 2 1 4 4 H 1.48504 * 109.47077 * 94.09781 * 3 2 1 5 5 H 1.48496 * 109.46673 * 214.09577 * 3 2 1 6 6 H 1.48496 * 109.47151 * 334.09661 * 3 2 1 7 7 C 1.38811 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 15.90143 * 7 2 1 9 9 N 1.36930 * 120.00362 * 195.90938 * 7 2 1 10 10 C 1.47161 * 120.98159 * 31.32273 * 9 7 2 11 11 C 1.53298 * 108.38218 * 129.44793 * 10 9 7 12 12 O 1.42955 * 109.22332 * 52.29938 * 11 10 9 13 13 C 1.42960 * 114.17324 * 297.42072 * 12 11 10 14 14 C 1.47148 * 120.98409 * 211.04844 * 9 7 2 15 15 H 1.08996 * 109.68687 * 110.83089 * 14 9 7 16 16 C 1.53007 * 109.68082 * 350.27341 * 14 9 7 17 17 N 1.46497 * 109.46627 * 60.58007 * 16 14 9 18 18 C 1.34778 * 119.99851 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00068 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.47095 * 179.97438 * 20 18 17 22 22 O 1.42905 * 112.84563 * 55.33710 * 21 20 18 23 23 C 1.53776 * 113.61867 * 284.13807 * 21 20 18 24 24 C 1.53949 * 87.02139 * 220.04572 * 23 21 20 25 25 C 1.53779 * 113.61474 * 186.53004 * 21 20 18 26 26 H 0.96999 * 120.00534 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.67995 * 249.16722 * 10 9 7 28 28 H 1.08990 * 109.67852 * 9.68485 * 10 9 7 29 29 H 1.08994 * 109.51102 * 172.22913 * 11 10 9 30 30 H 1.09005 * 109.50664 * 292.32525 * 11 10 9 31 31 H 1.08995 * 109.51643 * 182.50857 * 13 12 11 32 32 H 1.09005 * 109.51141 * 302.65661 * 13 12 11 33 33 H 1.08998 * 109.47237 * 180.58021 * 16 14 9 34 34 H 1.09001 * 109.46982 * 300.58314 * 16 14 9 35 35 H 0.97001 * 120.00285 * 359.97438 * 17 16 14 36 36 H 1.08998 * 109.47469 * 300.00263 * 20 18 17 37 37 H 1.09001 * 109.46827 * 60.00603 * 20 18 17 38 38 H 0.96693 * 114.00155 * 309.66278 * 22 21 20 39 39 H 1.08998 * 113.61638 * 334.57159 * 23 21 20 40 40 H 1.09008 * 113.61264 * 105.46738 * 23 21 20 41 41 H 1.08996 * 113.53931 * 270.81041 * 24 23 21 42 42 H 1.09003 * 113.66488 * 139.93502 * 24 23 21 43 43 H 1.08997 * 113.61905 * 254.53466 * 25 21 20 44 44 H 1.09006 * 113.61414 * 25.35265 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5842 1.9965 1.3965 5 1 3.5016 1.4668 -0.7848 6 1 1.4069 2.6762 -0.6116 7 6 2.0104 -1.2021 0.0005 8 1 1.5014 -2.1196 -0.2553 9 7 3.3403 -1.2246 0.3256 10 6 3.9025 -0.2592 1.2835 11 6 4.7042 -1.0334 2.3360 12 8 5.6385 -1.8924 1.6780 13 6 5.0344 -2.8940 0.8560 14 6 4.2485 -2.2187 -0.2680 15 1 4.9402 -1.7234 -0.9494 16 6 3.4366 -3.2684 -1.0296 17 7 2.6801 -2.6170 -2.1018 18 6 1.8887 -3.3502 -2.9096 19 8 1.8025 -4.5492 -2.7486 20 6 1.1101 -2.6801 -4.0122 21 6 0.2993 -3.7299 -4.7747 22 8 -0.5560 -4.4960 -3.9239 23 6 1.1456 -4.5871 -5.7306 24 6 -0.0229 -4.4853 -6.7277 25 6 -0.4091 -3.1749 -6.0217 26 1 -0.4851 0.8400 0.0004 27 1 4.5587 0.4367 0.7609 28 1 3.0952 0.2904 1.7672 29 1 5.2415 -0.3313 2.9734 30 1 4.0249 -1.6308 2.9441 31 1 5.8093 -3.5305 0.4288 32 1 4.3565 -3.4990 1.4582 33 1 4.1117 -4.0085 -1.4592 34 1 2.7460 -3.7606 -0.3449 35 1 2.7488 -1.6580 -2.2304 36 1 0.4346 -1.9405 -3.5823 37 1 1.8005 -2.1872 -4.6967 38 1 -0.1107 -4.8673 -3.1500 39 1 2.0550 -4.0924 -6.0715 40 1 1.3239 -5.5993 -5.3674 41 1 -0.7629 -5.2773 -6.6135 42 1 0.2947 -4.3473 -7.7613 43 1 -1.4840 -3.0485 -5.8933 44 1 0.0737 -2.2923 -6.4416 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673043953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:46 Heat of formation + Delta-G solvation = -99.355141 kcal Electronic energy + Delta-G solvation = -25896.265288 eV Core-core repulsion = 22235.607524 eV Total energy + Delta-G solvation = -3660.657764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40825 -40.44379 -39.38829 -37.02040 -35.53523 -35.19593 -33.64153 -32.77494 -31.11889 -29.22422 -26.96642 -26.60425 -25.22227 -24.40335 -23.49347 -21.61050 -21.20428 -20.53426 -18.85360 -17.91158 -17.81104 -17.46040 -17.18528 -16.80369 -16.55633 -16.26344 -16.03749 -15.78270 -15.66567 -15.49215 -15.11382 -14.53914 -14.42426 -14.15340 -13.86250 -13.57831 -13.46837 -13.19502 -13.04785 -12.82071 -12.48846 -12.34905 -12.30094 -12.10655 -12.04414 -11.73747 -11.56965 -11.40363 -11.34317 -11.07573 -10.66560 -10.57802 -10.47144 -9.86761 -8.85215 -8.11181 -5.52415 1.31635 1.43339 1.50975 1.69244 2.34434 2.43047 2.87230 3.03612 3.18397 3.22976 3.61586 3.69942 3.80970 3.93450 3.94331 4.09116 4.20599 4.26903 4.29735 4.39855 4.42713 4.48076 4.55904 4.62633 4.70529 4.72449 4.76924 4.81186 4.86500 4.90921 4.93191 5.06920 5.16164 5.21063 5.35528 5.46275 5.59006 5.86957 6.18851 6.21073 6.66220 6.75271 6.85243 7.33850 7.58521 7.99896 9.05974 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.004898 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.520583 B = 5715.247732 C = 6772.898293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.021 4.021 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.261 1.261 6 H -0.317 1.317 7 C -0.237 4.237 8 H 0.067 0.933 9 N -0.619 5.619 10 C 0.083 3.917 11 C 0.053 3.947 12 O -0.390 6.390 13 C 0.056 3.944 14 C 0.128 3.872 15 H 0.058 0.942 16 C 0.140 3.860 17 N -0.693 5.693 18 C 0.513 3.487 19 O -0.588 6.588 20 C -0.157 4.157 21 C 0.111 3.889 22 O -0.568 6.568 23 C -0.155 4.155 24 C -0.126 4.126 25 C -0.125 4.125 26 H 0.260 0.740 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.125 0.875 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.410 0.590 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.384 0.616 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 -3.575 -8.128 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.217 4.217 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.186 1.186 6 H -0.247 1.247 7 C -0.366 4.366 8 H 0.084 0.916 9 N -0.346 5.346 10 C -0.042 4.042 11 C -0.025 4.025 12 O -0.308 6.308 13 C -0.022 4.022 14 C 0.022 3.978 15 H 0.075 0.925 16 C 0.016 3.984 17 N -0.343 5.343 18 C 0.301 3.699 19 O -0.472 6.472 20 C -0.197 4.197 21 C 0.070 3.930 22 O -0.380 6.380 23 C -0.193 4.193 24 C -0.163 4.163 25 C -0.162 4.162 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.247 0.753 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.237 0.763 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.201 -4.139 -8.413 12.456 hybrid contribution -0.198 1.324 0.886 1.605 sum 8.003 -2.815 -7.527 11.342 Atomic orbital electron populations 1.69930 1.07299 1.26971 1.55442 1.25847 0.95491 1.00337 1.00042 0.86095 0.78240 0.80821 0.77908 1.20472 1.18552 1.24671 1.18774 0.83699 0.93231 1.40881 0.91587 1.44551 1.05447 1.36647 1.48003 1.22151 0.97009 0.93029 0.91981 1.23026 0.92240 0.93426 0.93845 1.87840 1.33409 1.46198 1.63374 1.22944 0.97882 0.89796 0.91624 1.21550 0.91619 0.90147 0.94435 0.92472 1.21120 0.94077 0.94485 0.88712 1.46003 1.45292 1.12085 1.30879 1.20908 0.78978 0.86925 0.83112 1.90487 1.66615 1.16057 1.74021 1.22319 1.00056 1.00096 0.97239 1.22157 0.91077 0.90716 0.89089 1.86278 1.40227 1.70760 1.40709 1.23572 0.98297 1.00415 0.96974 1.22728 0.97535 0.97077 0.98988 1.23152 1.01144 0.99049 0.92879 0.93126 0.94373 0.91777 0.86675 0.93434 0.85750 0.93492 0.89614 0.93931 0.75297 0.89286 0.85149 0.76316 0.88144 0.92488 0.91053 0.88928 0.91535 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.50 13.97 21.65 0.30 -55.20 16 2 C -0.02 -1.13 5.30 84.86 0.45 -0.68 16 3 Si 0.94 42.42 24.27 68.60 1.67 44.09 16 4 H -0.28 -12.05 6.42 99.48 0.64 -11.41 16 5 H -0.26 -11.13 6.79 99.48 0.68 -10.46 16 6 H -0.32 -15.00 7.11 99.48 0.71 -14.30 16 7 C -0.24 -11.66 7.51 84.03 0.63 -11.03 16 8 H 0.07 3.65 6.01 -2.91 -0.02 3.63 16 9 N -0.62 -25.51 2.78 -674.49 -1.87 -27.38 16 10 C 0.08 3.19 4.38 86.35 0.38 3.57 16 11 C 0.05 1.67 6.98 72.08 0.50 2.17 16 12 O -0.39 -12.26 10.74 -148.98 -1.60 -13.86 16 13 C 0.06 1.61 6.27 71.94 0.45 2.06 16 14 C 0.13 4.26 3.19 44.83 0.14 4.41 16 15 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.14 4.71 4.44 86.38 0.38 5.09 16 17 N -0.69 -24.29 3.77 -463.05 -1.75 -26.04 16 18 C 0.51 18.00 7.57 87.66 0.66 18.66 16 19 O -0.59 -22.96 13.63 15.27 0.21 -22.75 16 20 C -0.16 -4.67 5.33 29.85 0.16 -4.51 16 21 C 0.11 3.26 1.09 -10.27 -0.01 3.25 16 22 O -0.57 -20.79 13.40 -130.65 -1.75 -22.54 16 23 C -0.15 -3.84 7.08 31.18 0.22 -3.62 16 24 C -0.13 -2.69 8.02 31.18 0.25 -2.44 16 25 C -0.13 -2.91 7.48 31.12 0.23 -2.68 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.04 1.44 6.89 -2.39 -0.02 1.43 16 28 H 0.06 2.70 4.85 -2.39 -0.01 2.69 16 29 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 35 H 0.41 14.78 7.31 -92.71 -0.68 14.10 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.13 2.91 8.08 -2.39 -0.02 2.89 16 38 H 0.38 14.70 6.33 -74.06 -0.47 14.24 16 39 H 0.10 2.07 8.06 -2.39 -0.02 2.06 16 40 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.12 2.10 8.10 -2.38 -0.02 2.08 16 Total: -1.00 -64.18 338.56 -0.57 -64.75 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.23 Total: 44.67 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.45 Total: 14.26 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.32 Total: -108.62 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -3.14 Total: -59.15 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.67 Total: 44.09 kcal Total: -64.18 -0.57 -64.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673043953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.607 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds