Wall clock time and date at job start Tue Mar 31 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48497 * 109.46956 * 269.99754 * 3 2 1 5 5 H 1.48497 * 109.46978 * 30.00036 * 3 2 1 6 6 H 1.48500 * 109.46883 * 150.00197 * 3 2 1 7 7 C 1.38808 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00294 * 166.84509 * 7 2 1 9 9 N 1.36936 * 120.00474 * 346.84972 * 7 2 1 10 10 C 1.47155 * 120.97932 * 330.04129 * 9 7 2 11 11 C 1.53293 * 108.38519 * 230.25910 * 10 9 7 12 12 O 1.42968 * 109.22040 * 307.69961 * 11 10 9 13 13 C 1.42955 * 114.17044 * 62.57949 * 12 11 10 14 14 C 1.47153 * 120.98440 * 149.75269 * 9 7 2 15 15 H 1.09003 * 109.68470 * 249.46392 * 14 9 7 16 16 C 1.52999 * 109.68145 * 10.02025 * 14 9 7 17 17 N 1.46501 * 109.47133 * 299.30081 * 16 14 9 18 18 C 1.34775 * 120.00086 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99895 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.00036 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47083 * 180.02562 * 20 18 17 22 22 O 1.42905 * 112.85182 * 55.32904 * 21 20 18 23 23 C 1.53783 * 113.61575 * 284.13528 * 21 20 18 24 24 C 1.53952 * 87.01916 * 220.04560 * 23 21 20 25 25 C 1.53778 * 87.11171 * 25.36530 * 24 23 21 26 26 H 0.96998 * 120.00264 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.67904 * 349.98274 * 10 9 7 28 28 H 1.09004 * 109.67998 * 110.53345 * 10 9 7 29 29 H 1.08994 * 109.51325 * 67.61878 * 11 10 9 30 30 H 1.09001 * 109.51500 * 187.77412 * 11 10 9 31 31 H 1.09001 * 109.51139 * 57.34160 * 13 12 11 32 32 H 1.09001 * 109.51693 * 177.44389 * 13 12 11 33 33 H 1.09004 * 109.47332 * 59.29960 * 16 14 9 34 34 H 1.09001 * 109.47181 * 179.30238 * 16 14 9 35 35 H 0.96999 * 119.99674 * 0.02562 * 17 16 14 36 36 H 1.09001 * 109.47008 * 299.99612 * 20 18 17 37 37 H 1.09001 * 109.47126 * 59.99998 * 20 18 17 38 38 H 0.96696 * 113.99829 * 309.67653 * 22 21 20 39 39 H 1.09000 * 113.61257 * 334.57496 * 23 21 20 40 40 H 1.09001 * 113.61405 * 105.46682 * 23 21 20 41 41 H 1.08991 * 113.53971 * 270.80620 * 24 23 21 42 42 H 1.09003 * 113.73940 * 139.94093 * 24 23 21 43 43 H 1.08999 * 113.61324 * 220.08885 * 25 24 23 44 44 H 1.08995 * 113.69534 * 89.19481 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0689 -1.2146 -0.2123 9 7 1.3525 -2.3724 0.2708 10 6 0.1786 -2.3941 1.1580 11 6 0.3857 -3.4923 2.2072 12 8 0.7056 -4.7195 1.5472 13 6 1.9233 -4.6818 0.7992 14 6 1.7949 -3.6444 -0.3221 15 1 1.0612 -3.9834 -1.0536 16 6 3.1513 -3.4513 -1.0032 17 7 3.0254 -2.4527 -2.0678 18 6 4.1005 -2.1180 -2.8084 19 8 5.1722 -2.6438 -2.5938 20 6 3.9711 -1.0904 -3.9031 21 6 5.3275 -0.8974 -4.5842 22 8 5.8790 -2.1194 -5.0789 23 6 6.3199 -0.0645 -3.7558 24 6 6.7412 0.6013 -5.0784 25 6 5.3434 0.2463 -5.6122 26 1 -0.4850 0.8400 -0.0004 27 1 0.0746 -1.4285 1.6528 28 1 -0.7178 -2.6071 0.5755 29 1 1.2035 -3.2121 2.8710 30 1 -0.5283 -3.6185 2.7875 31 1 2.7467 -4.4058 1.4580 32 1 2.1160 -5.6639 0.3674 33 1 3.8811 -3.1097 -0.2692 34 1 3.4815 -4.3981 -1.4304 35 1 2.1684 -2.0320 -2.2391 36 1 3.2415 -1.4318 -4.6374 37 1 3.6408 -0.1437 -3.4756 38 1 5.8931 -2.8357 -4.4295 39 1 5.8388 0.6193 -3.0564 40 1 7.1089 -0.6579 -3.2939 41 1 7.5496 0.0794 -5.5903 42 1 6.9166 1.6738 -4.9935 43 1 5.3452 -0.0966 -6.6468 44 1 4.5938 1.0145 -5.4222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673043955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:51 Heat of formation + Delta-G solvation = -84.313378 kcal Electronic energy + Delta-G solvation = -25926.026357 eV Core-core repulsion = 22266.020853 eV Total energy + Delta-G solvation = -3660.005504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.16835 -38.84757 -38.03105 -35.40637 -34.28622 -33.61517 -31.79331 -30.65887 -29.83316 -27.26792 -25.67299 -25.48240 -23.52756 -23.14588 -21.69535 -20.02579 -19.63642 -19.49516 -17.16958 -16.49852 -16.22362 -15.97548 -15.76339 -15.23267 -15.05510 -14.68043 -14.55613 -14.48123 -14.07700 -13.86382 -13.50952 -13.07442 -12.82484 -12.70391 -12.52420 -12.17185 -11.85925 -11.61727 -11.36736 -11.13138 -11.10323 -10.93398 -10.82627 -10.76105 -10.47697 -10.34401 -10.30042 -10.10447 -9.72483 -9.49904 -9.42698 -9.01635 -8.74833 -8.37524 -6.82084 -5.98483 -3.46801 3.02522 3.19305 3.30202 3.32909 3.67418 4.23765 4.27157 4.47731 4.66442 4.77720 4.86481 4.93640 5.07489 5.18933 5.39874 5.48830 5.52928 5.63015 5.67115 5.74457 5.79873 5.81271 5.86303 5.96012 5.96527 6.02403 6.10123 6.16432 6.19892 6.27069 6.35662 6.44540 6.46781 6.68754 6.98754 7.00283 7.41572 7.62136 7.80884 7.95998 8.08858 8.20683 8.70599 8.97427 9.58649 10.17667 11.08002 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.005299 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.586056 B = 5282.250535 C = 6606.768286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.041 0.959 16 C 0.134 3.866 17 N -0.691 5.691 18 C 0.512 3.488 19 O -0.568 6.568 20 C -0.165 4.165 21 C 0.132 3.868 22 O -0.551 6.551 23 C -0.160 4.160 24 C -0.135 4.135 25 C -0.129 4.129 26 H 0.256 0.744 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.417 0.583 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.389 0.611 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -2.105 -5.284 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.341 5.341 18 C 0.299 3.701 19 O -0.451 6.451 20 C -0.205 4.205 21 C 0.090 3.910 22 O -0.363 6.363 23 C -0.198 4.198 24 C -0.173 4.173 25 C -0.166 4.166 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.244 0.756 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.825 -2.152 -5.625 8.379 hybrid contribution -0.110 1.161 0.600 1.311 sum 5.715 -0.991 -5.025 7.675 Atomic orbital electron populations 1.69989 1.05195 1.25768 1.53218 1.25120 0.95268 0.98242 1.00490 0.86416 0.79380 0.83808 0.77981 1.21124 1.21414 1.20388 1.19231 0.91858 0.83609 1.43944 0.90849 1.44107 1.33628 1.02099 1.51848 1.21407 0.89085 0.97195 0.90468 1.23347 0.99247 0.86060 0.95634 1.87804 1.41490 1.34953 1.66835 1.22861 0.86974 0.98805 0.93639 1.21434 0.93835 0.89269 0.93750 0.94134 1.21182 0.97637 0.90724 0.89442 1.46072 1.12943 1.41739 1.33336 1.20483 0.84099 0.82886 0.82637 1.90502 1.27464 1.56179 1.70922 1.22316 1.00017 1.00543 0.97602 1.21742 0.90065 0.85239 0.93943 1.86277 1.84334 1.21914 1.43787 1.23583 1.00149 0.99355 0.96732 1.22771 0.96984 1.00188 0.97334 1.23056 0.98028 0.96349 0.99185 0.93387 0.89055 0.95236 0.94091 0.90188 0.93507 0.89897 0.91443 0.92248 0.74518 0.88453 0.87679 0.75644 0.89800 0.90631 0.90048 0.91621 0.90708 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.49 11.19 55.49 0.62 -22.87 16 2 C 0.01 0.21 5.01 -17.43 -0.09 0.12 16 3 Si 0.89 19.98 29.57 -169.99 -5.03 14.95 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.12 7.10 -15.06 -0.11 -6.23 16 8 H 0.07 1.78 5.76 -52.48 -0.30 1.47 16 9 N -0.59 -13.15 3.03 -164.30 -0.50 -13.65 16 10 C 0.14 3.18 5.38 -3.53 -0.02 3.16 16 11 C 0.04 0.66 6.99 37.31 0.26 0.92 16 12 O -0.39 -7.46 10.74 -35.23 -0.38 -7.84 16 13 C 0.06 0.97 6.29 37.31 0.23 1.20 16 14 C 0.12 2.34 3.21 -67.42 -0.22 2.12 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.13 2.37 4.45 -4.04 -0.02 2.35 16 17 N -0.69 -12.17 3.75 -60.29 -0.23 -12.40 16 18 C 0.51 8.72 7.57 -10.99 -0.08 8.64 16 19 O -0.57 -10.64 13.63 -13.59 -0.19 -10.82 16 20 C -0.16 -2.39 5.33 -27.88 -0.15 -2.54 16 21 C 0.13 1.89 1.09 -89.81 -0.10 1.80 16 22 O -0.55 -8.65 13.40 -54.38 -0.73 -9.38 16 23 C -0.16 -2.28 7.07 -25.83 -0.18 -2.46 16 24 C -0.14 -1.63 8.02 -25.83 -0.21 -1.84 16 25 C -0.13 -1.56 7.48 -25.92 -0.19 -1.76 16 26 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.09 2.23 6.33 -51.93 -0.33 1.90 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.42 7.75 7.31 -40.82 -0.30 7.46 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 38 H 0.39 6.16 6.33 45.56 0.29 6.44 16 39 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -27.34 345.18 -8.59 -35.93 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -6.50 Total: 15.39 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.87 Total: 5.50 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.10 Total: -48.92 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.29 Total: -28.05 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.34 -8.59 -35.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673043955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.387 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds