Wall clock time and date at job start Tue Mar 31 2020 04:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.45974 * 2 1 4 4 O 1.21277 * 120.00218 * 241.14998 * 3 2 1 5 5 N 1.34775 * 119.99803 * 61.14984 * 3 2 1 6 6 C 1.46501 * 120.00182 * 174.96924 * 5 3 2 7 7 C 1.52998 * 112.94551 * 293.05599 * 6 5 3 8 8 C 1.53003 * 109.46928 * 303.88688 * 7 6 5 9 9 O 1.42899 * 109.47089 * 175.17811 * 8 7 6 10 10 C 1.53945 * 113.74362 * 161.31656 * 6 5 3 11 11 N 1.47574 * 86.11713 * 222.05151 * 10 6 5 12 12 C 1.36938 * 134.49154 * 204.64139 * 11 10 6 13 13 H 1.08005 * 120.00061 * 179.97438 * 12 11 10 14 14 C 1.38815 * 119.99863 * 0.02562 * 12 11 10 15 15 N 1.31616 * 120.00304 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47444 * 59.99428 * 16 14 12 18 18 H 1.48503 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47005 * 299.99609 * 16 14 12 20 20 C 1.47579 * 91.01784 * 24.63898 * 11 10 6 21 21 C 1.54512 * 110.63069 * 237.31252 * 2 1 3 22 22 C 1.54475 * 104.06421 * 241.30157 * 21 2 1 23 23 O 1.44419 * 104.80781 * 23.97900 * 22 21 2 24 24 C 1.44426 * 105.27354 * 319.49133 * 23 22 21 25 25 H 1.08994 * 109.46989 * 298.84907 * 1 2 3 26 26 H 1.09006 * 109.46853 * 58.84889 * 1 2 3 27 27 H 1.09002 * 109.47142 * 178.84566 * 1 2 3 28 28 H 0.97002 * 119.99937 * 354.97361 * 5 3 2 29 29 H 1.09001 * 109.47296 * 63.88275 * 7 6 5 30 30 H 1.08997 * 109.47227 * 183.89060 * 7 6 5 31 31 H 1.09001 * 109.46979 * 295.17903 * 8 7 6 32 32 H 1.09005 * 109.47206 * 55.17707 * 8 7 6 33 33 H 0.96703 * 113.99795 * 179.97438 * 9 8 7 34 34 H 1.09001 * 113.76734 * 336.35153 * 10 6 5 35 35 H 1.09003 * 113.76628 * 107.74820 * 10 6 5 36 36 H 0.96996 * 120.00046 * 180.02562 * 15 14 12 37 37 H 1.08998 * 113.77309 * 221.06051 * 20 11 10 38 38 H 1.09001 * 113.86694 * 89.67339 * 20 11 10 39 39 H 1.09001 * 110.51004 * 122.65049 * 21 2 1 40 40 H 1.09000 * 110.50937 * 359.94999 * 21 2 1 41 41 H 1.08997 * 110.37299 * 265.14172 * 22 21 2 42 42 H 1.09007 * 110.36950 * 142.80962 * 22 21 2 43 43 H 1.08997 * 110.37588 * 159.34398 * 24 23 22 44 44 H 1.09001 * 110.36801 * 281.67761 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7435 1.8030 -0.9199 5 7 1.7646 2.2401 1.0223 6 6 2.3654 3.5751 1.0782 7 6 3.8784 3.5394 1.3028 8 6 4.1862 2.7529 2.5785 9 8 5.6014 2.6232 2.7284 10 6 1.6213 4.5513 2.0074 11 7 1.8253 5.5579 0.9478 12 6 1.8901 6.9255 0.9229 13 1 2.0539 7.4415 -0.0117 14 6 1.7464 7.6486 2.0991 15 7 1.5474 7.0199 3.2381 16 14 1.8341 9.5143 2.0651 17 1 0.7621 10.0443 1.1847 18 1 1.6526 10.0435 3.4407 19 1 3.1581 9.9381 1.5429 20 6 1.9315 4.4987 -0.0744 21 6 2.0744 -0.7809 -1.2170 22 6 2.8801 -1.9400 -0.5895 23 8 2.3101 -2.1160 0.7257 24 6 2.0712 -0.7797 1.2189 25 1 -0.3633 0.4958 0.9001 26 1 -0.3633 0.5316 -0.8795 27 1 -0.3633 -1.0275 -0.0207 28 1 1.1566 1.9523 1.7212 29 1 4.3605 3.0563 0.4529 30 1 4.2548 4.5573 1.4038 31 1 3.7766 3.2817 3.4391 32 1 3.7356 1.7625 2.5124 33 1 5.8701 2.1345 3.5184 34 1 0.5755 4.2913 2.1709 35 1 2.1557 4.7717 2.9316 36 1 1.4466 7.5252 4.0599 37 1 2.7135 4.6772 -0.8125 38 1 0.9777 4.2222 -0.5238 39 1 2.7244 -0.1457 -1.8187 40 1 1.2535 -1.1690 -1.8201 41 1 3.9339 -1.6721 -0.5136 42 1 2.7602 -2.8485 -1.1797 43 1 1.3301 -0.7969 2.0179 44 1 3.0010 -0.3339 1.5721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675105729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:44 Heat of formation + Delta-G solvation = -78.397549 kcal Electronic energy + Delta-G solvation = -25975.073809 eV Core-core repulsion = 22315.324835 eV Total energy + Delta-G solvation = -3659.748974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78220 -39.22320 -37.57183 -36.41926 -33.98394 -33.43048 -31.84511 -30.40510 -29.75395 -27.14496 -26.70283 -25.08962 -23.86915 -23.05119 -22.48916 -21.35192 -19.38585 -18.68737 -17.51330 -17.08521 -16.81055 -16.31105 -15.55402 -15.38615 -15.22975 -14.84133 -14.69398 -14.33077 -14.02754 -13.72546 -13.67131 -13.40658 -12.73290 -12.56942 -12.41511 -12.16581 -11.95459 -11.75763 -11.62942 -11.35355 -11.19980 -11.09935 -10.98957 -10.90567 -10.77794 -10.73412 -10.20533 -9.96849 -9.90300 -9.70027 -9.59252 -9.21080 -8.92588 -8.64509 -6.95654 -5.83055 -3.14970 2.79348 3.27860 3.38946 3.42792 3.43948 3.81586 4.20222 4.42058 4.44569 4.57579 4.64108 4.87595 5.02014 5.03802 5.18341 5.18697 5.33118 5.41093 5.44584 5.48533 5.54920 5.59593 5.61928 5.69189 5.76851 5.79849 5.90162 5.94897 5.97544 6.30009 6.42408 6.48713 6.54260 6.62364 6.70230 6.80376 7.07696 7.26850 7.45105 7.76433 7.85192 7.91746 8.45733 8.99115 9.65075 10.51212 11.34469 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.004154 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.538906 B = 6739.599013 C = 7261.818512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.525 3.475 4 O -0.530 6.530 5 N -0.712 5.712 6 C 0.122 3.878 7 C -0.094 4.094 8 C 0.082 3.918 9 O -0.575 6.575 10 C 0.167 3.833 11 N -0.604 5.604 12 C -0.221 4.221 13 H 0.082 0.918 14 C -0.005 4.005 15 N -0.923 5.923 16 Si 0.914 3.086 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.130 3.870 21 C -0.143 4.143 22 C 0.045 3.955 23 O -0.372 6.372 24 C 0.060 3.940 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.396 0.604 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.372 0.628 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -17.676 -2.024 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C 0.310 3.690 4 O -0.406 6.406 5 N -0.363 5.363 6 C 0.036 3.964 7 C -0.133 4.133 8 C 0.004 3.996 9 O -0.379 6.379 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.349 4.349 13 H 0.099 0.901 14 C -0.202 4.202 15 N -0.570 5.570 16 Si 0.744 3.256 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.210 1.210 20 C 0.004 3.996 21 C -0.181 4.181 22 C -0.032 4.032 23 O -0.291 6.291 24 C -0.018 4.018 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.218 0.782 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.286 -16.890 -2.989 17.155 hybrid contribution -0.511 0.778 0.798 1.226 sum -0.225 -16.112 -2.191 16.262 Atomic orbital electron populations 1.21814 0.91395 1.02964 1.02945 1.22193 0.98311 0.93758 0.97843 1.20115 0.80244 0.86329 0.82325 1.90668 1.38600 1.76381 1.34911 1.46187 1.48086 1.16224 1.25790 1.22981 0.92999 0.79166 1.01291 1.21321 0.93375 1.02101 0.96465 1.22146 0.80569 0.98156 0.98713 1.86499 1.23304 1.79352 1.48774 1.22532 0.95855 0.83570 0.93950 1.45665 1.83898 1.00587 1.02924 1.18962 1.42695 0.79024 0.94172 0.90053 1.24758 1.01980 0.98137 0.95306 1.69767 1.55270 1.34163 0.97802 0.86177 0.78015 0.84817 0.76630 1.21170 1.21533 1.20973 1.22764 0.97639 0.86711 0.92517 1.23024 1.01085 0.96866 0.97085 1.23460 0.97170 0.98788 0.83789 1.89107 1.83013 1.25462 1.31510 1.23462 1.00477 0.82661 0.95169 0.91734 0.91645 0.91148 0.76994 0.91055 0.89095 0.93156 0.94685 0.78207 0.95223 0.90015 0.93535 0.93051 0.94729 0.87974 0.90201 0.92058 0.88965 0.88282 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.19 37.16 0.30 -0.93 16 2 C -0.12 -1.29 0.89 -154.09 -0.14 -1.43 16 3 C 0.53 7.62 6.07 -10.99 -0.07 7.55 16 4 O -0.53 -9.61 13.74 5.56 0.08 -9.53 16 5 N -0.71 -10.23 4.36 -49.08 -0.21 -10.44 16 6 C 0.12 2.24 0.67 -134.04 -0.09 2.15 16 7 C -0.09 -1.77 4.86 -26.73 -0.13 -1.90 16 8 C 0.08 1.28 6.86 37.16 0.25 1.54 16 9 O -0.57 -8.89 13.66 -35.23 -0.48 -9.37 16 10 C 0.17 3.66 6.72 -2.98 -0.02 3.64 16 11 N -0.60 -15.20 3.54 -177.73 -0.63 -15.83 16 12 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 13 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 14 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 15 N -0.92 -26.37 11.38 55.49 0.63 -25.74 16 16 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.13 2.81 7.41 -2.98 -0.02 2.79 16 21 C -0.14 -1.52 6.32 -25.16 -0.16 -1.68 16 22 C 0.04 0.44 7.63 37.93 0.29 0.73 16 23 O -0.37 -4.25 11.65 -35.23 -0.41 -4.66 16 24 C 0.06 0.61 6.68 37.94 0.25 0.86 16 25 H 0.06 0.53 7.64 -51.93 -0.40 0.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.40 4.64 8.17 -40.82 -0.33 4.31 16 29 H 0.07 1.41 7.24 -51.93 -0.38 1.04 16 30 H 0.09 1.99 8.02 -51.93 -0.42 1.57 16 31 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 32 H 0.03 0.48 7.53 -51.93 -0.39 0.09 16 33 H 0.37 3.77 9.12 45.56 0.42 4.19 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.96 6.58 -51.93 -0.34 1.62 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.28 6.51 -51.93 -0.34 0.94 16 40 H 0.08 0.74 7.74 -51.93 -0.40 0.33 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 44 H 0.06 0.70 7.86 -51.93 -0.41 0.29 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -33.01 352.67 -6.81 -39.82 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.29 Total: 6.78 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.22 Total: 6.80 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.21 Total: -52.02 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.82 Total: -23.57 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.01 -6.81 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675105729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.582 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds