Wall clock time and date at job start Tue Mar 31 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.45974 * 2 1 4 4 O 1.21277 * 120.00218 * 241.14998 * 3 2 1 5 5 N 1.34775 * 119.99803 * 61.14984 * 3 2 1 6 6 C 1.46501 * 120.00182 * 174.96924 * 5 3 2 7 7 C 1.52998 * 112.94551 * 293.05599 * 6 5 3 8 8 C 1.53003 * 109.46928 * 303.88688 * 7 6 5 9 9 O 1.42899 * 109.47089 * 175.17811 * 8 7 6 10 10 C 1.53945 * 113.74362 * 161.31656 * 6 5 3 11 11 N 1.47574 * 86.11713 * 222.05151 * 10 6 5 12 12 C 1.36938 * 134.49154 * 204.64139 * 11 10 6 13 13 H 1.08005 * 120.00061 * 179.97438 * 12 11 10 14 14 C 1.38815 * 119.99863 * 0.02562 * 12 11 10 15 15 N 1.31616 * 120.00304 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47444 * 59.99428 * 16 14 12 18 18 H 1.48503 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47005 * 299.99609 * 16 14 12 20 20 C 1.47579 * 91.01784 * 24.63898 * 11 10 6 21 21 C 1.54512 * 110.63069 * 237.31252 * 2 1 3 22 22 C 1.54475 * 104.06421 * 241.30157 * 21 2 1 23 23 O 1.44419 * 104.80781 * 23.97900 * 22 21 2 24 24 C 1.44426 * 105.27354 * 319.49133 * 23 22 21 25 25 H 1.08994 * 109.46989 * 298.84907 * 1 2 3 26 26 H 1.09006 * 109.46853 * 58.84889 * 1 2 3 27 27 H 1.09002 * 109.47142 * 178.84566 * 1 2 3 28 28 H 0.97002 * 119.99937 * 354.97361 * 5 3 2 29 29 H 1.09001 * 109.47296 * 63.88275 * 7 6 5 30 30 H 1.08997 * 109.47227 * 183.89060 * 7 6 5 31 31 H 1.09001 * 109.46979 * 295.17903 * 8 7 6 32 32 H 1.09005 * 109.47206 * 55.17707 * 8 7 6 33 33 H 0.96703 * 113.99795 * 179.97438 * 9 8 7 34 34 H 1.09001 * 113.76734 * 336.35153 * 10 6 5 35 35 H 1.09003 * 113.76628 * 107.74820 * 10 6 5 36 36 H 0.96996 * 120.00046 * 180.02562 * 15 14 12 37 37 H 1.08998 * 113.77309 * 221.06051 * 20 11 10 38 38 H 1.09001 * 113.86694 * 89.67339 * 20 11 10 39 39 H 1.09001 * 110.51004 * 122.65049 * 21 2 1 40 40 H 1.09000 * 110.50937 * 359.94999 * 21 2 1 41 41 H 1.08997 * 110.37299 * 265.14172 * 22 21 2 42 42 H 1.09007 * 110.36950 * 142.80962 * 22 21 2 43 43 H 1.08997 * 110.37588 * 159.34398 * 24 23 22 44 44 H 1.09001 * 110.36801 * 281.67761 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7435 1.8030 -0.9199 5 7 1.7646 2.2401 1.0223 6 6 2.3654 3.5751 1.0782 7 6 3.8784 3.5394 1.3028 8 6 4.1862 2.7529 2.5785 9 8 5.6014 2.6232 2.7284 10 6 1.6213 4.5513 2.0074 11 7 1.8253 5.5579 0.9478 12 6 1.8901 6.9255 0.9229 13 1 2.0539 7.4415 -0.0117 14 6 1.7464 7.6486 2.0991 15 7 1.5474 7.0199 3.2381 16 14 1.8341 9.5143 2.0651 17 1 0.7621 10.0443 1.1847 18 1 1.6526 10.0435 3.4407 19 1 3.1581 9.9381 1.5429 20 6 1.9315 4.4987 -0.0744 21 6 2.0744 -0.7809 -1.2170 22 6 2.8801 -1.9400 -0.5895 23 8 2.3101 -2.1160 0.7257 24 6 2.0712 -0.7797 1.2189 25 1 -0.3633 0.4958 0.9001 26 1 -0.3633 0.5316 -0.8795 27 1 -0.3633 -1.0275 -0.0207 28 1 1.1566 1.9523 1.7212 29 1 4.3605 3.0563 0.4529 30 1 4.2548 4.5573 1.4038 31 1 3.7766 3.2817 3.4391 32 1 3.7356 1.7625 2.5124 33 1 5.8701 2.1345 3.5184 34 1 0.5755 4.2913 2.1709 35 1 2.1557 4.7717 2.9316 36 1 1.4466 7.5252 4.0599 37 1 2.7135 4.6772 -0.8125 38 1 0.9777 4.2222 -0.5238 39 1 2.7244 -0.1457 -1.8187 40 1 1.2535 -1.1690 -1.8201 41 1 3.9339 -1.6721 -0.5136 42 1 2.7602 -2.8485 -1.1797 43 1 1.3301 -0.7969 2.0179 44 1 3.0010 -0.3339 1.5721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675105729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:43 Heat of formation + Delta-G solvation = -104.674867 kcal Electronic energy + Delta-G solvation = -25976.213279 eV Core-core repulsion = 22315.324835 eV Total energy + Delta-G solvation = -3660.888445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95051 -40.52003 -38.86868 -37.72238 -35.37927 -34.64970 -33.58438 -31.86896 -30.62620 -29.00417 -27.50307 -26.86764 -25.40523 -24.10573 -23.54617 -22.99429 -20.55302 -20.16605 -18.78634 -18.60041 -18.27578 -17.28553 -16.96052 -16.69885 -16.49695 -16.21692 -15.91827 -15.79757 -15.45507 -15.09093 -14.91508 -14.40754 -14.30708 -13.76541 -13.55018 -13.33421 -13.23905 -13.18635 -13.02856 -12.86862 -12.78242 -12.58974 -12.29555 -12.21923 -12.10735 -11.96085 -11.73820 -11.72136 -11.38260 -10.98881 -10.88428 -10.73427 -10.57600 -10.09087 -8.97221 -7.94024 -5.27086 1.45831 1.48529 1.54412 1.61910 2.04849 2.48250 2.98638 3.12229 3.25692 3.33304 3.39319 3.58907 3.73362 3.81689 4.00162 4.08866 4.23501 4.24559 4.26556 4.32516 4.44503 4.62043 4.69008 4.70071 4.70909 4.78346 4.83676 4.84734 4.90804 4.99735 5.01908 5.11199 5.12167 5.15203 5.21116 5.26113 5.46416 5.68933 5.74892 5.88878 6.59033 6.89622 6.89783 7.27600 7.55829 8.48942 9.22469 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.004154 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.538906 B = 6739.599013 C = 7261.818512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C 0.526 3.474 4 O -0.568 6.568 5 N -0.701 5.701 6 C 0.155 3.845 7 C -0.088 4.088 8 C 0.092 3.908 9 O -0.592 6.592 10 C 0.173 3.827 11 N -0.631 5.631 12 C -0.241 4.241 13 H 0.078 0.922 14 C -0.054 4.054 15 N -0.945 5.945 16 Si 0.976 3.024 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.128 3.872 21 C -0.144 4.144 22 C 0.045 3.955 23 O -0.382 6.382 24 C 0.060 3.940 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.414 0.586 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -19.468 -1.481 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 C 0.313 3.687 4 O -0.446 6.446 5 N -0.354 5.354 6 C 0.067 3.933 7 C -0.127 4.127 8 C 0.014 3.986 9 O -0.401 6.401 10 C 0.048 3.952 11 N -0.358 5.358 12 C -0.369 4.369 13 H 0.095 0.905 14 C -0.248 4.248 15 N -0.593 5.593 16 Si 0.804 3.196 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.206 1.206 20 C 0.002 3.998 21 C -0.182 4.182 22 C -0.032 4.032 23 O -0.300 6.300 24 C -0.017 4.017 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.251 0.749 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.505 -18.735 -2.431 18.899 hybrid contribution -0.225 1.294 0.561 1.429 sum -0.730 -17.441 -1.869 17.556 Atomic orbital electron populations 1.21848 0.89578 1.04214 1.03287 1.22190 0.99566 0.90853 0.98740 1.20762 0.79256 0.87513 0.81195 1.90669 1.40230 1.77375 1.36319 1.45931 1.48260 1.14481 1.26685 1.22209 0.92585 0.80610 0.97866 1.21176 0.93227 1.00310 0.98000 1.21971 0.81188 0.98874 0.96566 1.86438 1.22885 1.80134 1.50641 1.22420 0.96083 0.83778 0.92968 1.45940 1.84174 1.00641 1.05039 1.19266 1.42631 0.80723 0.94312 0.90465 1.25508 1.02063 1.02226 0.94989 1.69915 1.56047 1.35357 0.98003 0.85197 0.78052 0.79834 0.76489 1.20487 1.21475 1.20612 1.22830 0.97400 0.86872 0.92736 1.23036 1.01389 0.96789 0.96949 1.23540 0.96642 0.99437 0.83558 1.89106 1.83064 1.25851 1.32007 1.23555 1.00878 0.82075 0.95185 0.90413 0.92440 0.89377 0.74898 0.92174 0.92937 0.93366 0.91907 0.75326 0.94718 0.92184 0.93917 0.94487 0.94259 0.90228 0.88529 0.92628 0.86772 0.85700 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.19 71.98 0.59 -1.43 16 2 C -0.11 -2.16 0.89 -51.91 -0.05 -2.21 16 3 C 0.53 14.59 6.07 87.66 0.53 15.12 16 4 O -0.57 -20.59 13.74 -3.02 -0.04 -20.63 16 5 N -0.70 -19.16 4.36 -427.58 -1.86 -21.02 16 6 C 0.15 5.73 0.67 5.36 0.00 5.73 16 7 C -0.09 -3.38 4.86 30.59 0.15 -3.23 16 8 C 0.09 2.78 6.86 71.98 0.49 3.28 16 9 O -0.59 -17.62 13.66 -148.98 -2.04 -19.65 16 10 C 0.17 7.67 6.72 86.48 0.58 8.25 16 11 N -0.63 -32.53 3.54 -716.21 -2.54 -35.07 16 12 C -0.24 -13.68 10.70 84.03 0.90 -12.78 16 13 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 14 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 15 N -0.95 -54.69 11.38 21.65 0.25 -54.44 16 16 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 C 0.13 5.64 7.41 86.48 0.64 6.28 16 21 C -0.14 -2.80 6.32 31.61 0.20 -2.60 16 22 C 0.04 0.78 7.63 72.48 0.55 1.34 16 23 O -0.38 -7.57 11.65 -148.98 -1.74 -9.30 16 24 C 0.06 1.05 6.68 72.49 0.48 1.53 16 25 H 0.08 0.99 7.64 -2.39 -0.02 0.97 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.41 8.63 8.17 -92.71 -0.76 7.87 16 29 H 0.06 2.43 7.24 -2.39 -0.02 2.41 16 30 H 0.05 2.40 8.02 -2.39 -0.02 2.38 16 31 H 0.05 1.50 7.61 -2.39 -0.02 1.48 16 32 H 0.06 1.57 7.53 -2.38 -0.02 1.55 16 33 H 0.40 7.22 9.12 -74.06 -0.68 6.54 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 2.94 6.58 -2.39 -0.02 2.92 16 36 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.96 6.51 -2.39 -0.02 1.94 16 40 H 0.10 1.54 7.74 -2.39 -0.02 1.52 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.13 1.53 7.87 -2.39 -0.02 1.51 16 44 H 0.06 1.08 7.86 -2.39 -0.02 1.06 16 Total: -1.00 -72.46 352.67 -0.81 -73.27 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.42 Total: 22.66 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.55 Total: 16.72 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.15 Total: -110.53 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -3.81 Total: -49.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.46 -0.81 -73.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675105729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds