Wall clock time and date at job start Tue Mar 31 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99906 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34780 * 120.00091 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99882 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00126 * 180.02562 * 16 14 13 18 18 H 1.08993 * 110.67313 * 34.29796 * 17 16 14 19 19 C 1.54890 * 110.75580 * 271.06036 * 17 16 14 20 20 C 1.54466 * 104.10318 * 203.89213 * 19 17 16 21 21 C 1.53879 * 106.68207 * 23.34746 * 20 19 17 22 22 H 1.09003 * 110.02776 * 240.87209 * 21 20 19 23 23 C 1.50701 * 110.07470 * 119.46460 * 21 20 19 24 24 N 1.34773 * 119.99854 * 62.80802 * 23 21 20 25 25 O 1.21274 * 119.99700 * 242.80599 * 23 21 20 26 26 C 1.54263 * 106.59995 * 0.15250 * 21 20 19 27 27 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 30 30 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 31 31 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 32 32 H 0.97005 * 119.99763 * 359.97438 * 16 14 13 33 33 H 1.08993 * 110.48558 * 322.42380 * 19 17 16 34 34 H 1.09003 * 110.48284 * 85.06585 * 19 17 16 35 35 H 1.08992 * 109.85967 * 264.10824 * 20 19 17 36 36 H 1.08999 * 110.15962 * 142.74825 * 20 19 17 37 37 H 0.96999 * 119.99976 * 359.97438 * 24 23 21 38 38 H 0.97000 * 119.99882 * 179.97438 * 24 23 21 39 39 H 1.08998 * 110.48825 * 217.71251 * 26 21 20 40 40 H 1.09003 * 110.48406 * 95.07426 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0490 -3.7517 0.0098 14 6 7.3740 -3.9981 0.0157 15 8 8.1642 -3.0739 0.0171 16 7 7.8233 -5.2687 0.0199 17 6 9.2636 -5.5364 0.0268 18 1 9.7933 -4.7775 0.6025 19 6 9.8146 -5.6129 -1.4187 20 6 11.0932 -6.4700 -1.2893 21 6 10.9294 -7.3181 -0.0158 22 1 11.7220 -7.0822 0.6943 23 6 10.9667 -8.7842 -0.3624 24 7 12.0788 -9.3208 -0.9026 25 8 9.9962 -9.4812 -0.1551 26 6 9.5562 -6.9517 0.5841 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0004 29 1 5.9281 -1.8579 -0.8832 30 1 5.9200 -1.8555 0.8967 31 1 5.4187 -4.4891 0.0083 32 1 7.1929 -6.0060 0.0191 33 1 9.0950 -6.1008 -2.0760 34 1 10.0556 -4.6162 -1.7883 35 1 11.9651 -5.8226 -1.1972 36 1 11.2001 -7.1187 -2.1587 37 1 12.8550 -8.7632 -1.0686 38 1 12.1030 -10.2646 -1.1253 39 1 9.6091 -6.9297 1.6726 40 1 8.7945 -7.6573 0.2525 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682186791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:14 Heat of formation + Delta-G solvation = -113.868790 kcal Electronic energy + Delta-G solvation = -23349.354924 eV Core-core repulsion = 19584.527458 eV Total energy + Delta-G solvation = -3764.827466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59847 -39.77157 -38.45559 -37.38545 -34.47054 -34.26395 -33.72508 -33.45095 -31.77887 -29.30146 -28.72966 -27.05020 -24.26093 -22.76152 -21.26719 -20.66449 -19.95574 -19.62182 -18.83322 -18.05605 -17.86124 -17.17256 -16.32248 -16.15709 -15.56249 -15.42297 -15.02402 -14.73011 -14.50466 -14.20550 -14.05078 -13.92301 -13.60162 -13.13750 -12.64657 -12.46236 -12.23930 -12.14053 -11.99055 -11.78633 -11.58001 -11.22755 -11.20874 -10.97132 -10.62834 -10.24686 -10.12679 -10.08679 -10.03954 -9.68137 -9.17459 -8.74681 -8.66261 -8.28691 -6.39130 -3.91679 2.23273 2.72762 3.01063 3.05662 3.11231 3.13913 3.33680 3.59762 4.03256 4.05257 4.18149 4.32515 4.49587 4.65520 4.79675 4.95612 5.06164 5.08474 5.15903 5.18790 5.26819 5.45692 5.66903 5.68646 5.81281 5.82568 5.87737 5.93316 5.98628 6.33286 6.54355 6.66964 6.87256 7.07849 7.46824 7.83934 8.02237 8.20372 8.46285 8.75839 8.83570 9.31667 9.65616 10.73057 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.043380 B = 0.002311 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.309165 B =12114.970564 C =12551.881394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.707 3.293 15 O -0.599 6.599 16 N -0.741 5.741 17 C 0.162 3.838 18 H 0.098 0.902 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.113 4.113 22 H 0.104 0.896 23 C 0.523 3.477 24 N -0.857 5.857 25 O -0.539 6.539 26 C -0.119 4.119 27 H 0.275 0.725 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.401 0.599 39 H 0.078 0.922 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.721 -12.387 -1.714 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.479 6.479 16 N -0.396 5.396 17 C 0.056 3.944 18 H 0.116 0.884 19 C -0.176 4.176 20 C -0.151 4.151 21 C -0.135 4.135 22 H 0.122 0.878 23 C 0.308 3.692 24 N -0.421 5.421 25 O -0.415 6.415 26 C -0.158 4.158 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.097 0.903 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.054 -12.374 -1.495 28.881 hybrid contribution 0.425 0.577 -0.209 0.746 sum 26.479 -11.797 -1.703 29.038 Atomic orbital electron populations 1.69621 1.05707 1.27781 1.48283 1.25068 0.95543 0.98180 0.97187 0.86663 0.79920 0.83751 0.79122 1.19407 1.20014 1.19197 1.19438 0.78976 0.96786 1.48595 0.86101 1.42117 1.07679 1.06137 1.65545 1.19678 0.88138 0.84856 0.84876 1.90539 1.69268 1.30931 1.55573 1.20792 0.93276 0.82952 1.03190 1.44764 1.05284 1.09293 1.78934 1.15847 0.82521 0.83259 0.77755 1.90891 1.55160 1.43173 1.58627 1.45024 1.07502 1.06340 1.80686 1.21725 0.80241 0.96472 0.95934 0.88429 1.22832 0.96512 1.00511 0.97779 1.22127 0.99329 0.97867 0.95820 1.21880 1.00632 0.91426 0.99531 0.87769 1.20610 0.82344 0.90301 0.75935 1.43879 1.16843 1.14416 1.66915 1.90754 1.34881 1.62880 1.53015 1.22573 0.96051 0.96253 1.00895 0.91411 0.79239 0.89918 0.89905 0.75431 0.76711 0.91020 0.90419 0.90403 0.91173 0.76998 0.76867 0.90332 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.10 13.96 55.50 0.77 -24.33 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.50 5.09 -10.96 -0.06 -13.56 16 10 C 0.44 9.72 7.85 -10.98 -0.09 9.63 16 11 O -0.58 -14.73 15.24 5.55 0.08 -14.65 16 12 C 0.13 2.22 6.15 -5.20 -0.03 2.19 16 13 N -0.73 -11.75 5.53 -66.42 -0.37 -12.12 16 14 C 0.71 10.94 8.57 -86.92 -0.74 10.20 16 15 O -0.60 -11.00 16.03 5.28 0.08 -10.92 16 16 N -0.74 -8.61 5.20 -56.73 -0.29 -8.90 16 17 C 0.16 1.58 3.21 -65.94 -0.21 1.37 16 18 H 0.10 1.06 7.62 -51.93 -0.40 0.66 16 19 C -0.14 -1.19 6.53 -24.97 -0.16 -1.35 16 20 C -0.11 -0.64 6.41 -25.50 -0.16 -0.80 16 21 C -0.11 -0.69 3.29 -90.65 -0.30 -0.99 16 22 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 23 C 0.52 4.04 7.18 -10.99 -0.08 3.96 16 24 N -0.86 -3.33 8.77 31.22 0.27 -3.05 16 25 O -0.54 -6.67 16.24 5.56 0.09 -6.58 16 26 C -0.12 -0.97 5.77 -25.07 -0.14 -1.12 16 27 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.41 6.52 7.45 -40.82 -0.30 6.22 16 32 H 0.40 3.96 8.56 -40.82 -0.35 3.61 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 7.62 -51.93 -0.40 -0.03 16 37 H 0.40 0.38 8.83 -40.82 -0.36 0.02 16 38 H 0.40 1.33 8.93 -40.82 -0.36 0.97 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.91 6.75 -51.93 -0.35 0.56 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -36.12 339.38 -6.45 -42.57 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -5.27 Total: 16.58 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -2.17 Total: 15.46 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.33 Total: -61.96 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: 0.26 Total: -32.14 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.12 -6.45 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682186791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.300 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds