Wall clock time and date at job start Tue Mar 31 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99906 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34780 * 120.00091 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99882 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00126 * 180.02562 * 16 14 13 18 18 H 1.08993 * 110.67313 * 34.29796 * 17 16 14 19 19 C 1.54890 * 110.75580 * 271.06036 * 17 16 14 20 20 C 1.54466 * 104.10318 * 203.89213 * 19 17 16 21 21 C 1.53879 * 106.68207 * 23.34746 * 20 19 17 22 22 H 1.09003 * 110.02776 * 240.87209 * 21 20 19 23 23 C 1.50701 * 110.07470 * 119.46460 * 21 20 19 24 24 N 1.34773 * 119.99854 * 62.80802 * 23 21 20 25 25 O 1.21274 * 119.99700 * 242.80599 * 23 21 20 26 26 C 1.54263 * 106.59995 * 0.15250 * 21 20 19 27 27 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 30 30 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 31 31 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 32 32 H 0.97005 * 119.99763 * 359.97438 * 16 14 13 33 33 H 1.08993 * 110.48558 * 322.42380 * 19 17 16 34 34 H 1.09003 * 110.48284 * 85.06585 * 19 17 16 35 35 H 1.08992 * 109.85967 * 264.10824 * 20 19 17 36 36 H 1.08999 * 110.15962 * 142.74825 * 20 19 17 37 37 H 0.96999 * 119.99976 * 359.97438 * 24 23 21 38 38 H 0.97000 * 119.99882 * 179.97438 * 24 23 21 39 39 H 1.08998 * 110.48825 * 217.71251 * 26 21 20 40 40 H 1.09003 * 110.48406 * 95.07426 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0490 -3.7517 0.0098 14 6 7.3740 -3.9981 0.0157 15 8 8.1642 -3.0739 0.0171 16 7 7.8233 -5.2687 0.0199 17 6 9.2636 -5.5364 0.0268 18 1 9.7933 -4.7775 0.6025 19 6 9.8146 -5.6129 -1.4187 20 6 11.0932 -6.4700 -1.2893 21 6 10.9294 -7.3181 -0.0158 22 1 11.7220 -7.0822 0.6943 23 6 10.9667 -8.7842 -0.3624 24 7 12.0788 -9.3208 -0.9026 25 8 9.9962 -9.4812 -0.1551 26 6 9.5562 -6.9517 0.5841 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0004 29 1 5.9281 -1.8579 -0.8832 30 1 5.9200 -1.8555 0.8967 31 1 5.4187 -4.4891 0.0083 32 1 7.1929 -6.0060 0.0191 33 1 9.0950 -6.1008 -2.0760 34 1 10.0556 -4.6162 -1.7883 35 1 11.9651 -5.8226 -1.1972 36 1 11.2001 -7.1187 -2.1587 37 1 12.8550 -8.7632 -1.0686 38 1 12.1030 -10.2646 -1.1253 39 1 9.6091 -6.9297 1.6726 40 1 8.7945 -7.6573 0.2525 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682186791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:13 Heat of formation + Delta-G solvation = -146.637702 kcal Electronic energy + Delta-G solvation = -23350.775891 eV Core-core repulsion = 19584.527458 eV Total energy + Delta-G solvation = -3766.248433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45163 -40.84375 -40.11871 -38.22324 -36.26636 -35.25760 -34.97189 -34.26992 -33.81542 -30.00074 -29.78834 -28.27379 -26.08603 -23.35732 -22.30472 -21.58493 -21.43693 -20.66180 -20.45679 -19.45864 -18.43429 -17.76082 -17.45177 -17.25906 -16.94498 -16.70050 -16.62823 -15.89733 -15.66868 -15.51930 -15.11203 -14.88706 -14.64603 -14.39964 -14.31807 -13.98129 -13.71456 -13.30276 -12.96549 -12.69111 -12.50200 -12.44055 -12.20463 -11.99438 -11.83780 -11.63069 -11.57475 -11.37232 -10.85976 -10.64869 -10.60835 -10.37466 -10.30514 -9.78760 -8.45003 -6.07149 1.31954 1.34895 1.44715 1.61275 1.66950 1.79729 2.13353 2.21317 2.62988 2.81075 3.11218 3.26814 3.56113 3.59589 3.97148 4.00965 4.24047 4.35099 4.40379 4.45161 4.46685 4.49169 4.56433 4.70860 4.92324 5.09704 5.17480 5.23992 5.30294 5.31636 5.49434 5.62880 5.88738 5.93839 5.98197 6.49533 6.51134 6.78717 7.02514 7.29134 7.39482 7.54854 7.79183 8.71450 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.043380 B = 0.002311 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.309165 B =12114.970564 C =12551.881394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.062 0.938 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.616 6.616 12 C 0.139 3.861 13 N -0.729 5.729 14 C 0.707 3.293 15 O -0.626 6.626 16 N -0.729 5.729 17 C 0.158 3.842 18 H 0.091 0.909 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.106 4.106 22 H 0.134 0.866 23 C 0.520 3.480 24 N -0.837 5.837 25 O -0.594 6.594 26 C -0.115 4.115 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.408 0.592 32 H 0.407 0.593 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.419 0.581 38 H 0.406 0.594 39 H 0.083 0.917 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.556 -11.266 -1.812 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.210 4.210 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.080 0.920 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.502 6.502 12 C 0.011 3.989 13 N -0.387 5.387 14 C 0.407 3.593 15 O -0.507 6.507 16 N -0.384 5.384 17 C 0.053 3.947 18 H 0.109 0.891 19 C -0.176 4.176 20 C -0.141 4.141 21 C -0.127 4.127 22 H 0.152 0.848 23 C 0.305 3.695 24 N -0.400 5.400 25 O -0.475 6.475 26 C -0.153 4.153 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 29.975 -11.292 -1.611 32.072 hybrid contribution -0.764 0.059 -0.196 0.791 sum 29.211 -11.233 -1.807 31.348 Atomic orbital electron populations 1.69786 1.08052 1.29456 1.49317 1.26093 0.96468 1.02682 0.95725 0.85424 0.79580 0.76896 0.80095 1.18045 1.19839 1.15502 1.19024 0.80994 0.95244 1.50767 0.91958 1.41914 1.06101 1.07430 1.66331 1.20550 0.90139 0.83834 0.82217 1.90528 1.70848 1.32391 1.56389 1.20686 0.89051 0.84199 1.04987 1.44756 1.05741 1.08777 1.79420 1.15904 0.81817 0.84031 0.77546 1.90868 1.55574 1.44268 1.60035 1.45046 1.08739 1.05303 1.79298 1.21907 0.78815 0.97127 0.96889 0.89070 1.22793 0.97845 1.00474 0.96538 1.22100 0.98495 0.97688 0.95808 1.21885 1.00129 0.90427 1.00289 0.84777 1.20892 0.82312 0.90716 0.75553 1.43734 1.16366 1.14942 1.64989 1.90740 1.36990 1.64139 1.55596 1.22497 0.97035 0.94581 1.01234 0.90930 0.77176 0.87947 0.88011 0.75423 0.75783 0.92130 0.91483 0.87876 0.90395 0.74954 0.76335 0.89874 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.96 21.66 0.30 -54.47 16 2 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 3 Si 0.96 38.25 27.74 68.60 1.90 40.16 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 7 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 8 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 9 N -0.58 -26.77 5.09 -306.98 -1.56 -28.33 16 10 C 0.45 19.63 7.85 87.66 0.69 20.32 16 11 O -0.62 -32.18 15.24 -3.07 -0.05 -32.22 16 12 C 0.14 4.64 6.15 85.64 0.53 5.16 16 13 N -0.73 -22.92 5.53 -482.30 -2.67 -25.58 16 14 C 0.71 21.08 8.57 179.05 1.53 22.62 16 15 O -0.63 -21.98 16.03 -4.01 -0.06 -22.04 16 16 N -0.73 -16.42 5.20 -451.65 -2.35 -18.77 16 17 C 0.16 2.87 3.21 46.28 0.15 3.02 16 18 H 0.09 1.83 7.62 -2.39 -0.02 1.81 16 19 C -0.14 -2.18 6.53 31.74 0.21 -1.97 16 20 C -0.10 -0.86 6.41 31.39 0.20 -0.66 16 21 C -0.11 -1.02 3.29 -10.82 -0.04 -1.06 16 22 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 23 C 0.52 7.12 7.18 87.66 0.63 7.75 16 24 N -0.84 -4.41 8.77 -173.54 -1.52 -5.93 16 25 O -0.59 -14.53 16.24 -3.01 -0.05 -14.58 16 26 C -0.11 -1.74 5.77 31.67 0.18 -1.56 16 27 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 28 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 29 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 30 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.41 12.97 7.45 -92.71 -0.69 12.28 16 32 H 0.41 7.95 8.56 -92.70 -0.79 7.16 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.08 0.57 7.62 -2.39 -0.02 0.55 16 37 H 0.42 -0.64 8.83 -92.71 -0.82 -1.46 16 38 H 0.41 1.87 8.93 -92.71 -0.83 1.04 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.46 6.75 -2.39 -0.02 1.45 16 Total: -1.00 -82.80 339.38 -3.23 -86.03 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -2.58 Total: 40.28 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 5.40 Total: 35.45 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -7.80 Total: -133.08 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -0.16 Total: -68.84 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.16 kcal Total: -82.80 -3.23 -86.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682186791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.603 kcal (2) G-P(sol) polarization free energy of solvation -82.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds