Wall clock time and date at job start Tue Mar 31 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9 14 14 H 1.08996 * 113.68970 * 89.12734 * 13 12 10 15 15 C 1.53002 * 113.62024 * 220.02020 * 13 12 10 16 16 N 1.46500 * 109.47425 * 272.50011 * 15 13 12 17 17 C 1.34772 * 120.00059 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00308 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00066 * 180.02562 * 17 16 15 20 20 O 1.42899 * 109.47490 * 179.97438 * 19 17 16 21 21 C 1.42906 * 114.00097 * 179.97438 * 20 19 17 22 22 H 1.08992 * 110.74896 * 32.02175 * 21 20 19 23 23 C 1.55308 * 110.84460 * 155.71850 * 21 20 19 24 24 C 1.54942 * 100.93985 * 152.32414 * 23 21 20 25 25 O 1.43643 * 105.13914 * 323.55477 * 24 23 21 26 26 C 1.43240 * 109.96991 * 24.42454 * 25 24 23 27 27 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 28 28 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 30 30 H 1.08992 * 113.61675 * 254.61383 * 12 10 9 31 31 H 1.09000 * 113.60973 * 25.51671 * 12 10 9 32 32 H 1.08997 * 109.47064 * 32.50151 * 15 13 12 33 33 H 1.09006 * 109.47182 * 152.49563 * 15 13 12 34 34 H 0.96996 * 119.99355 * 359.97438 * 16 15 13 35 35 H 1.09005 * 109.47018 * 300.00068 * 19 17 16 36 36 H 1.09006 * 109.47329 * 59.99263 * 19 17 16 37 37 H 1.09002 * 111.12280 * 270.24087 * 23 21 20 38 38 H 1.08997 * 111.12437 * 34.40464 * 23 21 20 39 39 H 1.08996 * 110.30736 * 204.63827 * 24 23 21 40 40 H 1.09000 * 110.39278 * 82.51119 * 24 23 21 41 41 H 1.09002 * 109.83332 * 238.77604 * 26 25 24 42 42 H 1.09000 * 109.82954 * 117.80533 * 26 25 24 43 43 H 1.08999 * 113.61567 * 334.48111 * 27 10 9 44 44 H 1.08998 * 113.61196 * 105.38466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 1.8625 -5.6908 0.5602 14 1 2.8060 -6.1607 0.2828 15 6 0.8750 -6.6712 1.1963 16 7 1.5802 -7.5166 2.1628 17 6 0.9070 -8.4609 2.8494 18 8 -0.2827 -8.6106 2.6675 19 6 1.6323 -9.3301 3.8441 20 8 0.7100 -10.2459 4.4381 21 6 1.2994 -11.1216 5.4014 22 1 2.1229 -10.6291 5.9182 23 6 0.2339 -11.6312 6.4099 24 6 0.8449 -12.9949 6.8193 25 8 1.4505 -13.5090 5.6226 26 6 1.7732 -12.4315 4.7357 27 6 1.2469 -4.8365 -0.5606 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 2.9742 -4.3216 1.9018 31 1 1.1688 -4.1300 1.9705 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 0.1537 -10.9633 7.2676 38 1 -0.7336 -11.7637 5.9257 39 1 0.0636 -13.6701 7.1681 40 1 1.5981 -12.8561 7.5949 41 1 1.2600 -12.5694 3.7841 42 1 2.8506 -12.3954 4.5743 43 1 0.1684 -4.7076 -0.4690 44 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691440917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:56 Heat of formation + Delta-G solvation = -121.188463 kcal Electronic energy + Delta-G solvation = -23265.911787 eV Core-core repulsion = 19604.307260 eV Total energy + Delta-G solvation = -3661.604528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08935 -40.49350 -39.75125 -38.01105 -36.04778 -35.01950 -32.57625 -32.19562 -30.30819 -29.49962 -27.51259 -26.44967 -25.67868 -23.49727 -22.55679 -22.45744 -21.77464 -20.46750 -19.06666 -18.51129 -18.35076 -17.57101 -17.10058 -16.88671 -16.70057 -16.35510 -16.01417 -15.80381 -15.49619 -15.32695 -14.95596 -14.76207 -14.30544 -14.24250 -13.56233 -13.42375 -13.30700 -13.22710 -13.04247 -12.91825 -12.71417 -12.61057 -12.46288 -12.16232 -12.05271 -11.75369 -11.59252 -11.54414 -11.10375 -10.87629 -10.77619 -10.74907 -10.54020 -10.10266 -8.97148 -7.94413 -5.22757 1.47606 1.48297 1.55833 1.58366 1.74919 2.56807 2.72987 3.04730 3.37669 3.39638 3.65771 3.75702 3.77989 3.85996 3.94348 3.97176 4.17339 4.19148 4.26262 4.29107 4.30952 4.36087 4.43249 4.56822 4.63715 4.71774 4.77475 4.80053 4.90396 4.98445 5.00085 5.02624 5.06362 5.23589 5.35576 5.42924 5.53665 5.74893 5.93445 6.01108 6.28125 6.56537 7.23589 7.33373 8.12283 8.33427 9.29367 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.001940 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.092091 B =14432.085821 C =14613.753004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.082 0.918 12 C -0.153 4.153 13 C -0.093 4.093 14 H 0.126 0.874 15 C 0.138 3.862 16 N -0.708 5.708 17 C 0.504 3.496 18 O -0.582 6.582 19 C 0.044 3.956 20 O -0.379 6.379 21 C 0.052 3.948 22 H 0.113 0.887 23 C -0.155 4.155 24 C 0.050 3.950 25 O -0.406 6.406 26 C 0.025 3.975 27 C -0.138 4.138 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 -25.807 12.154 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.032 3.968 11 H 0.100 0.900 12 C -0.193 4.193 13 C -0.112 4.112 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.362 5.362 17 C 0.291 3.709 18 O -0.461 6.461 19 C -0.035 4.035 20 O -0.298 6.298 21 C -0.005 4.005 22 H 0.130 0.870 23 C -0.193 4.193 24 C -0.026 4.026 25 O -0.326 6.326 26 C -0.052 4.052 27 C -0.178 4.178 28 H 0.058 0.942 29 H 0.203 0.797 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.258 0.742 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.823 -25.992 11.917 29.924 hybrid contribution -0.062 1.544 -0.045 1.546 sum 8.761 -24.448 11.871 28.554 Atomic orbital electron populations 1.69836 1.06757 1.25905 1.59914 1.25617 0.96376 1.01315 1.04082 0.85064 0.78402 0.79799 0.76453 1.18632 1.22276 1.22367 1.19784 0.91661 0.85337 1.40382 0.90124 1.42662 1.05353 1.01318 1.87544 1.21985 0.95613 0.83804 0.95363 0.90025 1.23765 1.01132 0.95929 0.98502 1.22517 0.99452 0.92899 0.96298 0.85576 1.21217 0.94662 0.91736 0.90940 1.45745 1.13703 1.35101 1.41625 1.20971 0.87301 0.80910 0.81754 1.90732 1.17755 1.70452 1.67206 1.22472 0.91951 0.92603 0.96490 1.88065 1.35195 1.49106 1.57446 1.23946 0.97171 0.90172 0.89253 0.86964 1.23349 0.99010 0.97613 0.99295 1.23528 0.97602 0.93976 0.87497 1.88404 1.81628 1.31959 1.30569 1.23743 1.01388 0.86233 0.93802 1.23324 0.99729 0.96053 0.98681 0.94167 0.79741 0.91006 0.92807 0.93783 0.91841 0.74224 0.86689 0.86729 0.87365 0.90996 0.88473 0.89699 0.91793 0.88878 0.91724 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.73 -36.41 5.41 -320.44 -1.73 -38.15 16 10 C 0.14 5.17 4.47 45.52 0.20 5.37 16 11 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 12 C -0.15 -4.58 7.45 31.21 0.23 -4.35 16 13 C -0.09 -2.09 3.76 -10.18 -0.04 -2.12 16 14 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 15 C 0.14 3.30 5.51 86.38 0.48 3.78 16 16 N -0.71 -12.83 5.56 -463.06 -2.57 -15.40 16 17 C 0.50 11.46 7.91 87.66 0.69 12.15 16 18 O -0.58 -20.33 16.50 16.00 0.26 -20.06 16 19 C 0.04 0.58 6.29 71.23 0.45 1.03 16 20 O -0.38 -7.42 9.61 -129.94 -1.25 -8.67 16 21 C 0.05 0.66 3.45 31.85 0.11 0.77 16 22 H 0.11 0.70 7.89 -2.39 -0.02 0.68 16 23 C -0.16 -1.89 6.89 32.05 0.22 -1.67 16 24 C 0.05 0.54 7.78 72.65 0.56 1.11 16 25 O -0.41 -6.95 11.36 -148.98 -1.69 -8.64 16 26 C 0.03 0.35 7.58 72.45 0.55 0.90 16 27 C -0.14 -4.09 7.39 31.12 0.23 -3.86 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.37 20.23 7.91 -92.71 -0.73 19.50 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 32 H 0.04 1.31 7.85 -2.39 -0.02 1.29 16 33 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.42 4.28 8.47 -92.71 -0.79 3.50 16 35 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.12 0.81 8.11 -2.38 -0.02 0.79 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -78.87 366.22 -0.20 -79.07 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.52 Total: 27.26 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.99 Total: -3.43 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -4.02 Total: -113.43 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -2.68 Total: -37.37 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -78.87 -0.20 -79.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691440917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.119 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds