Wall clock time and date at job start Tue Mar 31 2020 03:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36858 * 2 1 4 4 C 1.54378 * 110.41450 * 237.64773 * 2 1 3 5 5 H 1.09000 * 110.32341 * 336.36835 * 4 2 1 6 6 N 1.46507 * 110.32259 * 98.47221 * 4 2 1 7 7 C 1.34774 * 119.99703 * 205.00331 * 6 4 2 8 8 O 1.21341 * 120.00186 * 359.97438 * 7 6 4 9 9 C 1.49449 * 119.99593 * 180.02562 * 7 6 4 10 10 N 1.34777 * 120.00046 * 179.97438 * 9 7 6 11 11 O 1.21350 * 120.00349 * 359.97438 * 9 7 6 12 12 C 1.54258 * 105.06304 * 217.36934 * 4 2 1 13 13 C 1.54382 * 105.06228 * 359.97438 * 12 4 2 14 14 N 1.48559 * 110.41220 * 122.47403 * 2 1 3 15 15 C 1.46899 * 111.00103 * 277.81941 * 14 2 1 16 16 C 1.50703 * 109.47163 * 169.99711 * 15 14 2 17 17 O 1.21297 * 120.00105 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00238 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00120 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00246 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48488 * 109.47121 * 59.99459 * 23 21 19 25 25 H 1.48501 * 109.47041 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46790 * 299.99428 * 23 21 19 27 27 H 1.09002 * 109.47153 * 182.34991 * 1 2 3 28 28 H 1.09001 * 109.46832 * 62.35182 * 1 2 3 29 29 H 1.09004 * 109.47261 * 302.35163 * 1 2 3 30 30 H 0.97003 * 119.99770 * 25.00503 * 6 4 2 31 31 H 0.97003 * 120.00073 * 0.02562 * 10 9 7 32 32 H 0.96996 * 120.00686 * 179.97438 * 10 9 7 33 33 H 1.08994 * 110.32796 * 118.89484 * 12 4 2 34 34 H 1.09000 * 110.32324 * 241.00525 * 12 4 2 35 35 H 1.09001 * 110.41404 * 142.62920 * 13 12 4 36 36 H 1.09005 * 110.41200 * 265.07664 * 13 12 4 37 37 H 1.08993 * 109.47633 * 289.99770 * 15 14 2 38 38 H 1.09002 * 109.46977 * 49.99974 * 15 14 2 39 39 H 0.96997 * 119.99832 * 0.02562 * 18 16 15 40 40 H 0.96997 * 120.00115 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 1 1.3229 -1.4850 -1.5786 6 7 2.4356 0.1563 -2.2926 7 6 2.4425 -0.2600 -3.5744 8 8 2.1450 -1.4055 -3.8419 9 6 2.8176 0.6891 -4.6662 10 7 2.8250 0.2728 -5.9481 11 8 3.1156 1.8347 -4.3987 12 6 3.3178 -1.5181 -0.7070 13 6 3.4295 -1.1302 0.7831 14 7 2.0481 -0.7476 1.1746 15 6 2.0569 0.0988 2.3752 16 6 2.3502 -0.7496 3.5858 17 8 2.5344 -1.9419 3.4606 18 7 2.4090 -0.1833 4.8074 19 6 2.6764 -0.9550 5.9085 20 1 2.8396 -2.0167 5.7972 21 6 2.7364 -0.3713 7.1680 22 7 2.5374 0.9206 7.3037 23 14 3.1015 -1.4226 8.6683 24 1 4.4288 -2.0689 8.5087 25 1 3.1107 -0.5669 9.8820 26 1 2.0555 -2.4676 8.8068 27 1 -0.3633 -1.0268 0.0421 28 1 -0.3633 0.4769 -0.9103 29 1 -0.3634 0.5499 0.8682 30 1 2.6738 1.0720 -2.0787 31 1 2.5864 -0.6428 -6.1620 32 1 3.0681 0.8888 -6.6568 33 1 3.1862 -2.5952 -0.8093 34 1 4.2039 -1.1921 -1.2516 35 1 3.7694 -1.9814 1.3731 36 1 4.1079 -0.2859 0.9064 37 1 2.8251 0.8653 2.2740 38 1 1.0828 0.5739 2.4920 39 1 2.2621 0.7702 4.9075 40 1 2.5797 1.3282 8.1829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692197744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:09 Heat of formation + Delta-G solvation = -128.362260 kcal Electronic energy + Delta-G solvation = -24041.546484 eV Core-core repulsion = 20276.090534 eV Total energy + Delta-G solvation = -3765.455950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.82333 -40.72107 -39.71473 -38.98986 -36.11346 -35.68817 -34.53689 -33.28721 -32.44292 -32.10651 -28.30613 -27.07860 -25.87457 -25.21229 -22.55811 -21.62347 -21.34314 -20.80444 -19.85685 -19.60700 -18.36544 -17.68107 -17.40086 -16.99767 -16.85964 -16.47223 -16.29409 -16.10946 -15.71445 -15.33506 -15.20320 -14.86167 -14.68694 -14.46368 -13.91640 -13.70343 -13.45517 -12.98855 -12.92135 -12.87568 -12.81435 -12.47867 -12.39934 -12.37478 -12.12297 -12.07811 -11.70861 -11.46330 -10.90257 -10.83692 -10.37081 -10.27241 -9.98901 -9.40968 -8.44872 -5.93214 0.31437 1.38317 1.40415 1.42125 1.52817 2.08403 2.11549 2.29179 2.65682 2.97344 3.21675 3.33242 3.39182 3.59164 3.73663 4.01179 4.14190 4.21985 4.32685 4.39553 4.40513 4.53776 4.67814 4.78118 4.86350 4.93582 5.01784 5.11909 5.22710 5.35443 5.42384 5.52722 5.81256 5.89992 5.94258 6.08494 6.26758 6.63000 6.76366 7.00946 7.15236 7.59132 8.15481 8.72402 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.040200 B = 0.002638 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.346323 B =10610.622177 C =10748.738921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.078 0.922 4 C 0.152 3.848 5 H 0.101 0.899 6 N -0.681 5.681 7 C 0.508 3.492 8 O -0.539 6.539 9 C 0.518 3.482 10 N -0.800 5.800 11 O -0.550 6.550 12 C -0.124 4.124 13 C 0.038 3.962 14 N -0.498 5.498 15 C 0.048 3.952 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.419 0.581 31 H 0.423 0.577 32 H 0.423 0.577 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.396 0.604 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 3.628 -23.786 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 H 0.096 0.904 4 C 0.047 3.953 5 H 0.119 0.881 6 N -0.335 5.335 7 C 0.288 3.712 8 O -0.416 6.416 9 C 0.296 3.704 10 N -0.367 5.367 11 O -0.427 6.427 12 C -0.163 4.163 13 C -0.090 4.090 14 N -0.223 5.223 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.257 0.743 31 H 0.255 0.745 32 H 0.258 0.742 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.230 0.770 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.274 2.363 -23.414 23.567 hybrid contribution 0.774 0.864 0.740 1.376 sum -0.501 3.227 -22.674 22.908 Atomic orbital electron populations 1.21728 0.92177 1.02673 1.02633 1.22938 0.97493 0.96425 0.88513 0.90446 1.21722 0.96872 0.91001 0.85705 0.88098 1.45843 1.66577 1.16122 1.04926 1.20250 0.78688 0.87753 0.84487 1.90783 1.47764 1.19561 1.83451 1.19946 0.78158 0.86978 0.85325 1.43423 1.68359 1.18635 1.06291 1.90830 1.48445 1.19767 1.83700 1.22665 0.98141 1.01384 0.94087 1.23073 0.89622 1.00519 0.95794 1.65051 1.19264 1.36527 1.01435 1.21925 1.03744 0.93779 0.88950 1.20735 0.82439 0.88843 0.84911 1.90491 1.55719 1.17536 1.86341 1.41922 1.63100 1.10885 1.05480 1.19594 1.47063 0.93450 0.85939 0.90426 1.26010 0.96746 0.97317 1.01239 1.69664 1.49824 1.10804 1.25949 0.85015 0.78835 0.77793 0.76862 1.19767 1.19521 1.19774 0.92513 0.90280 0.92004 0.74298 0.74505 0.74216 0.90619 0.89680 0.91914 0.93231 0.90836 0.87066 0.77042 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.30 71.98 0.67 -2.05 16 2 C 0.05 1.21 2.58 45.06 0.12 1.33 16 3 H 0.08 1.43 7.61 -2.38 -0.02 1.41 16 4 C 0.15 3.22 2.96 45.88 0.14 3.36 16 5 H 0.10 2.35 7.27 -2.39 -0.02 2.33 16 6 N -0.68 -11.99 5.02 -439.63 -2.21 -14.20 16 7 C 0.51 9.52 7.89 87.27 0.69 10.21 16 8 O -0.54 -12.38 16.13 -3.22 -0.05 -12.43 16 9 C 0.52 8.37 8.16 87.27 0.71 9.08 16 10 N -0.80 -6.85 8.87 -174.50 -1.55 -8.40 16 11 O -0.55 -11.74 17.31 -3.25 -0.06 -11.80 16 12 C -0.12 -2.96 6.79 31.49 0.21 -2.74 16 13 C 0.04 1.14 5.92 86.45 0.51 1.66 16 14 N -0.50 -15.45 4.66 -861.15 -4.01 -19.46 16 15 C 0.05 1.60 5.27 85.56 0.45 2.05 16 16 C 0.44 20.99 7.63 87.66 0.67 21.66 16 17 O -0.62 -34.06 14.80 -3.08 -0.05 -34.11 16 18 N -0.58 -29.50 5.29 -306.98 -1.62 -31.12 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 22 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 23 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.26 7.39 -2.38 -0.02 1.24 16 30 H 0.42 6.37 7.85 -92.71 -0.73 5.64 16 31 H 0.42 2.58 8.30 -92.71 -0.77 1.81 16 32 H 0.42 1.85 8.93 -92.71 -0.83 1.02 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.80 7.95 -2.39 -0.02 1.78 16 35 H 0.06 2.36 7.24 -2.39 -0.02 2.35 16 36 H 0.05 1.38 7.75 -2.38 -0.02 1.36 16 37 H 0.07 2.16 7.77 -2.39 -0.02 2.15 16 38 H 0.11 3.28 7.23 -2.39 -0.02 3.26 16 39 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 40 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -73.10 340.75 -3.71 -76.81 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -1.93 Total: 32.76 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.45 Total: 26.27 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -9.11 Total: -122.66 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.15 Total: -58.34 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.10 -3.71 -76.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692197744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.549 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds