Wall clock time and date at job start Tue Mar 31 2020 03:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3
5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1
6 6 C 1.36938 * 120.00241 * 180.02562 * 5 4 2
7 7 H 1.07999 * 120.00320 * 0.02562 * 6 5 4
8 8 C 1.38819 * 119.99938 * 180.02562 * 6 5 4
9 9 N 1.31622 * 119.99924 * 359.97438 * 8 6 5
10 10 Si 1.86796 * 120.00022 * 180.02562 * 8 6 5
11 11 H 1.48504 * 109.47394 * 89.99731 * 10 8 6
12 12 H 1.48496 * 109.47260 * 210.00175 * 10 8 6
13 13 H 1.48508 * 109.47223 * 330.00071 * 10 8 6
14 14 N 1.46500 * 109.47473 * 239.99757 * 2 1 3
15 15 C 1.34780 * 119.99910 * 85.00011 * 14 2 1
16 16 O 1.21281 * 119.99723 * 0.02562 * 15 14 2
17 17 C 1.50693 * 120.00182 * 180.02562 * 15 14 2
18 18 C 1.52999 * 109.47365 * 179.97438 * 17 15 14
19 19 C 1.52997 * 109.47350 * 179.97438 * 18 17 15
20 20 H 1.09003 * 110.53576 * 302.17065 * 19 18 17
21 21 N 1.47314 * 110.59788 * 64.99526 * 19 18 17
22 22 C 1.34533 * 106.61406 * 118.52905 * 21 19 18
23 23 O 1.21535 * 123.76556 * 180.02562 * 22 21 19
24 24 N 1.33790 * 112.46009 * 0.02562 * 22 21 19
25 25 C 1.34769 * 111.64491 * 359.97438 * 24 22 21
26 26 O 1.21230 * 127.16137 * 180.02562 * 25 24 22
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
30 30 H 1.09001 * 109.47317 * 295.00638 * 4 2 1
31 31 H 1.09006 * 109.47194 * 55.00274 * 4 2 1
32 32 H 0.97006 * 119.99812 * 0.02562 * 5 4 2
33 33 H 0.97002 * 119.99936 * 179.97438 * 9 8 6
34 34 H 0.96994 * 119.99975 * 265.00388 * 14 2 1
35 35 H 1.09007 * 109.46680 * 299.99959 * 17 15 14
36 36 H 1.09000 * 109.47439 * 59.99224 * 17 15 14
37 37 H 1.09000 * 109.46920 * 299.99959 * 18 17 15
38 38 H 1.09006 * 109.47048 * 59.99857 * 18 17 15
39 39 H 0.96994 * 126.69190 * 298.49595 * 21 19 18
40 40 H 0.96998 * 124.17889 * 179.97438 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 3.5000 -0.8263 1.1907
6 6 4.1837 -1.4387 2.2069
7 1 3.6466 -1.8446 3.0514
8 6 5.5673 -1.5379 2.1515
9 7 6.2218 -1.0437 1.1221
10 14 6.4999 -2.3739 3.5374
11 1 6.6325 -3.8231 3.2412
12 1 7.8501 -1.7684 3.6612
13 1 5.7584 -2.1950 4.8116
14 7 2.0184 -0.6906 -1.1961
15 6 2.1471 -0.0183 -2.3571
16 8 1.8591 1.1586 -2.4115
17 6 2.6490 -0.7288 -3.5877
18 6 2.7000 0.2542 -4.7590
19 6 3.2101 -0.4670 -6.0082
20 1 4.1939 -0.8992 -5.8252
21 7 2.2573 -1.5080 -6.4311
22 6 1.8432 -1.1716 -7.6661
23 8 1.0458 -1.8228 -8.3119
24 7 2.4072 -0.0401 -8.1038
25 6 3.2519 0.4796 -7.1913
26 8 3.9085 1.4935 -7.2950
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5139 0.8900
30 1 1.7516 -0.1583 2.1370
31 1 1.6054 -1.7198 1.2952
32 1 3.9824 -0.4621 0.4320
33 1 7.1886 -1.1127 1.0836
34 1 2.2490 -1.6317 -1.1525
35 1 3.6482 -1.1213 -3.3984
36 1 1.9762 -1.5507 -3.8325
37 1 1.7007 0.6463 -4.9480
38 1 3.3727 1.0763 -4.5144
39 1 1.9826 -2.2847 -5.9191
40 1 2.2300 0.3572 -8.9708
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699429532.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:43
Heat of formation + Delta-G solvation = -82.432478 kcal
Electronic energy + Delta-G solvation = -23805.794355 eV
Core-core repulsion = 20042.330070 eV
Total energy + Delta-G solvation = -3763.464286 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.67901 -39.65980 -38.93252 -36.85195 -36.24644 -34.84112 -33.69280 -32.53751
-31.32089 -30.01983 -27.98114 -25.74251 -24.05969 -23.06320 -22.62973 -21.70779
-20.73752 -20.07417 -18.70011 -17.38994 -17.33366 -17.02589 -16.79817 -16.06313
-16.04880 -15.70990 -15.51438 -14.83418 -14.54638 -14.36561 -13.99562 -13.76176
-13.38591 -13.11445 -12.95927 -12.37882 -12.27335 -12.21973 -12.09804 -11.64507
-11.39766 -11.25931 -10.95565 -10.88747 -10.73697 -10.60144 -10.50900 -10.11240
-9.88869 -9.80642 -9.64374 -8.98191 -8.75969 -7.02894 -5.84909 -3.14642
1.24544 2.06854 2.65430 2.75773 2.85038 3.36245 3.38377 3.43805
3.45284 3.64127 4.31018 4.47817 4.51858 4.70065 4.95675 5.02380
5.07337 5.24189 5.37418 5.46433 5.48936 5.60331 5.64705 5.70695
5.87975 5.96701 6.04072 6.13149 6.33705 6.36819 6.42530 6.53963
6.64189 6.88569 7.02603 7.62079 7.77561 7.79090 8.33182 8.46395
9.45220 10.00557 10.36114 11.37405
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.017331 B = 0.003033 C = 0.002795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.168628 B = 9228.851468 C =10015.305418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.132 3.868
3 H 0.087 0.913
4 C 0.144 3.856
5 N -0.732 5.732
6 C -0.244 4.244
7 H 0.071 0.929
8 C -0.011 4.011
9 N -0.931 5.931
10 Si 0.908 3.092
11 H -0.290 1.290
12 H -0.291 1.291
13 H -0.282 1.282
14 N -0.710 5.710
15 C 0.515 3.485
16 O -0.549 6.549
17 C -0.141 4.141
18 C -0.102 4.102
19 C 0.091 3.909
20 H 0.136 0.864
21 N -0.720 5.720
22 C 0.705 3.295
23 O -0.548 6.548
24 N -0.681 5.681
25 C 0.530 3.470
26 O -0.460 6.460
27 H 0.055 0.945
28 H 0.056 0.944
29 H 0.064 0.936
30 H 0.033 0.967
31 H 0.024 0.976
32 H 0.386 0.614
33 H 0.256 0.744
34 H 0.404 0.596
35 H 0.105 0.895
36 H 0.091 0.909
37 H 0.082 0.918
38 H 0.102 0.898
39 H 0.442 0.558
40 H 0.432 0.568
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.015 -1.266 -14.984 17.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.028 3.972
3 H 0.105 0.895
4 C 0.016 3.984
5 N -0.377 5.377
6 C -0.375 4.375
7 H 0.088 0.912
8 C -0.208 4.208
9 N -0.579 5.579
10 Si 0.739 3.261
11 H -0.217 1.217
12 H -0.217 1.217
13 H -0.208 1.208
14 N -0.361 5.361
15 C 0.301 3.699
16 O -0.427 6.427
17 C -0.181 4.181
18 C -0.141 4.141
19 C -0.018 4.018
20 H 0.153 0.847
21 N -0.386 5.386
22 C 0.404 3.596
23 O -0.422 6.422
24 N -0.352 5.352
25 C 0.315 3.685
26 O -0.328 6.328
27 H 0.074 0.926
28 H 0.075 0.925
29 H 0.083 0.917
30 H 0.051 0.949
31 H 0.042 0.958
32 H 0.220 0.780
33 H 0.065 0.935
34 H 0.239 0.761
35 H 0.123 0.877
36 H 0.109 0.891
37 H 0.101 0.899
38 H 0.120 0.880
39 H 0.287 0.713
40 H 0.274 0.726
Dipole moment (debyes) X Y Z Total
from point charges -9.206 -0.303 -15.160 17.739
hybrid contribution 0.729 -1.016 0.455 1.331
sum -8.477 -1.319 -14.705 17.025
Atomic orbital electron populations
1.22095 0.95540 1.01804 1.02134 1.21242 0.93297 0.98039 0.84651
0.89534 1.20983 0.86858 0.96946 0.93625 1.42350 0.99724 1.70269
1.25314 1.19219 0.89439 1.29504 0.99310 0.91151 1.24748 0.96424
1.01486 0.98115 1.69660 1.07281 1.50700 1.30295 0.86186 0.79415
0.78957 0.81567 1.21704 1.21745 1.20766 1.45994 1.66309 1.14421
1.09327 1.20376 0.77584 0.87292 0.84679 1.90696 1.50724 1.15975
1.85294 1.21624 1.04189 0.99215 0.93111 1.21531 1.04098 0.98339
0.90114 1.22255 0.96456 0.88390 0.94703 0.84701 1.45619 1.47491
1.28466 1.16991 1.15852 0.80602 0.80644 0.82504 1.91064 1.35847
1.55188 1.60059 1.44334 1.43700 1.25766 1.21448 1.20776 0.77909
0.85133 0.84666 1.90879 1.40356 1.22530 1.79053 0.92612 0.92499
0.91681 0.94915 0.95804 0.78016 0.93457 0.76106 0.87667 0.89108
0.89925 0.87978 0.71315 0.72561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16
2 C 0.13 2.08 2.73 -67.93 -0.19 1.89 16
3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16
4 C 0.14 2.65 5.82 -4.05 -0.02 2.63 16
5 N -0.73 -17.31 5.43 -59.91 -0.33 -17.63 16
6 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16
7 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16
9 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16
10 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16
11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
14 N -0.71 -9.99 4.52 -53.81 -0.24 -10.23 16
15 C 0.51 7.10 7.79 -10.99 -0.09 7.02 16
16 O -0.55 -9.55 15.64 5.56 0.09 -9.46 16
17 C -0.14 -1.25 5.60 -27.89 -0.16 -1.40 16
18 C -0.10 -0.89 4.28 -26.73 -0.11 -1.01 16
19 C 0.09 0.61 3.70 -68.21 -0.25 0.36 16
20 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16
21 N -0.72 -4.59 5.94 -59.19 -0.35 -4.94 16
22 C 0.70 6.30 8.99 -88.02 -0.79 5.51 16
23 O -0.55 -6.89 18.04 5.33 0.10 -6.80 16
24 N -0.68 -5.10 5.70 -15.79 -0.09 -5.19 16
25 C 0.53 4.59 8.14 -10.55 -0.09 4.50 16
26 O -0.46 -5.47 18.02 5.60 0.10 -5.37 16
27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.39 9.69 7.33 -40.82 -0.30 9.39 16
33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
34 H 0.40 5.25 8.60 -40.82 -0.35 4.90 16
35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.09 0.55 7.36 -51.93 -0.38 0.17 16
37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16
38 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16
39 H 0.44 2.02 8.37 -40.82 -0.34 1.68 16
40 H 0.43 2.46 8.96 -40.82 -0.37 2.10 16
LS Contribution 346.81 15.07 5.23 5.23
Total: -1.00 -35.16 346.81 -6.87 -42.03
By element:
Atomic # 1 Polarization: 16.72 SS G_CDS: -5.48 Total: 11.24 kcal
Atomic # 6 Polarization: 12.37 SS G_CDS: -1.59 Total: 10.78 kcal
Atomic # 7 Polarization: -63.96 SS G_CDS: -0.29 Total: -64.24 kcal
Atomic # 8 Polarization: -21.91 SS G_CDS: 0.28 Total: -21.63 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -35.16 -6.87 -42.03 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699429532.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.401 kcal
(2) G-P(sol) polarization free energy of solvation -35.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds