Wall clock time and date at job start Tue Mar 31 2020 03:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3
5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1
6 6 C 1.36938 * 120.00241 * 180.02562 * 5 4 2
7 7 H 1.07999 * 120.00320 * 0.02562 * 6 5 4
8 8 C 1.38819 * 119.99938 * 180.02562 * 6 5 4
9 9 N 1.31622 * 119.99924 * 359.97438 * 8 6 5
10 10 Si 1.86796 * 120.00022 * 180.02562 * 8 6 5
11 11 H 1.48504 * 109.47394 * 89.99731 * 10 8 6
12 12 H 1.48496 * 109.47260 * 210.00175 * 10 8 6
13 13 H 1.48508 * 109.47223 * 330.00071 * 10 8 6
14 14 N 1.46500 * 109.47473 * 239.99757 * 2 1 3
15 15 C 1.34780 * 119.99910 * 85.00011 * 14 2 1
16 16 O 1.21281 * 119.99723 * 0.02562 * 15 14 2
17 17 C 1.50693 * 120.00182 * 180.02562 * 15 14 2
18 18 C 1.52999 * 109.47365 * 179.97438 * 17 15 14
19 19 C 1.52997 * 109.47350 * 179.97438 * 18 17 15
20 20 H 1.09003 * 110.53576 * 302.17065 * 19 18 17
21 21 N 1.47314 * 110.59788 * 64.99526 * 19 18 17
22 22 C 1.34533 * 106.61406 * 118.52905 * 21 19 18
23 23 O 1.21535 * 123.76556 * 180.02562 * 22 21 19
24 24 N 1.33790 * 112.46009 * 0.02562 * 22 21 19
25 25 C 1.34769 * 111.64491 * 359.97438 * 24 22 21
26 26 O 1.21230 * 127.16137 * 180.02562 * 25 24 22
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
30 30 H 1.09001 * 109.47317 * 295.00638 * 4 2 1
31 31 H 1.09006 * 109.47194 * 55.00274 * 4 2 1
32 32 H 0.97006 * 119.99812 * 0.02562 * 5 4 2
33 33 H 0.97002 * 119.99936 * 179.97438 * 9 8 6
34 34 H 0.96994 * 119.99975 * 265.00388 * 14 2 1
35 35 H 1.09007 * 109.46680 * 299.99959 * 17 15 14
36 36 H 1.09000 * 109.47439 * 59.99224 * 17 15 14
37 37 H 1.09000 * 109.46920 * 299.99959 * 18 17 15
38 38 H 1.09006 * 109.47048 * 59.99857 * 18 17 15
39 39 H 0.96994 * 126.69190 * 298.49595 * 21 19 18
40 40 H 0.96998 * 124.17889 * 179.97438 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 3.5000 -0.8263 1.1907
6 6 4.1837 -1.4387 2.2069
7 1 3.6466 -1.8446 3.0514
8 6 5.5673 -1.5379 2.1515
9 7 6.2218 -1.0437 1.1221
10 14 6.4999 -2.3739 3.5374
11 1 6.6325 -3.8231 3.2412
12 1 7.8501 -1.7684 3.6612
13 1 5.7584 -2.1950 4.8116
14 7 2.0184 -0.6906 -1.1961
15 6 2.1471 -0.0183 -2.3571
16 8 1.8591 1.1586 -2.4115
17 6 2.6490 -0.7288 -3.5877
18 6 2.7000 0.2542 -4.7590
19 6 3.2101 -0.4670 -6.0082
20 1 4.1939 -0.8992 -5.8252
21 7 2.2573 -1.5080 -6.4311
22 6 1.8432 -1.1716 -7.6661
23 8 1.0458 -1.8228 -8.3119
24 7 2.4072 -0.0401 -8.1038
25 6 3.2519 0.4796 -7.1913
26 8 3.9085 1.4935 -7.2950
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5139 0.8900
30 1 1.7516 -0.1583 2.1370
31 1 1.6054 -1.7198 1.2952
32 1 3.9824 -0.4621 0.4320
33 1 7.1886 -1.1127 1.0836
34 1 2.2490 -1.6317 -1.1525
35 1 3.6482 -1.1213 -3.3984
36 1 1.9762 -1.5507 -3.8325
37 1 1.7007 0.6463 -4.9480
38 1 3.3727 1.0763 -4.5144
39 1 1.9826 -2.2847 -5.9191
40 1 2.2300 0.3572 -8.9708
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699429532.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:43
Heat of formation + Delta-G solvation = -112.674118 kcal
Electronic energy + Delta-G solvation = -23807.105731 eV
Core-core repulsion = 20042.330070 eV
Total energy + Delta-G solvation = -3764.775661 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.37600 -40.79670 -39.73316 -37.86235 -37.41970 -35.63050 -35.37952 -33.41516
-32.80932 -31.45666 -28.74330 -27.39049 -24.98593 -24.37769 -23.70289 -22.46319
-21.90658 -21.19493 -19.40945 -19.19349 -18.12296 -18.02003 -17.56790 -17.18998
-16.85397 -16.72669 -16.49368 -16.36161 -15.47216 -15.36630 -15.30871 -15.14707
-14.90514 -14.16380 -13.93224 -13.69917 -13.58249 -13.36438 -13.02918 -12.95807
-12.75854 -12.60385 -12.19511 -12.13105 -12.00815 -11.87094 -11.67613 -11.50028
-11.38293 -10.97495 -10.76496 -10.52010 -9.95992 -8.98281 -7.92422 -5.21262
0.51914 1.43836 1.50843 1.51971 1.59940 1.76451 1.94579 2.13080
2.35649 2.58327 2.94849 3.41876 3.54302 3.82651 3.87278 3.92708
4.08187 4.28701 4.31889 4.34470 4.39952 4.56393 4.68645 4.83524
4.89975 4.95995 4.97544 5.07478 5.15071 5.16559 5.33760 5.53475
5.66683 5.81548 5.86464 6.28934 6.37240 6.69299 7.12422 7.36725
7.38030 8.10084 8.34351 9.30353
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.017331 B = 0.003033 C = 0.002795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.168628 B = 9228.851468 C =10015.305418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.139 3.861
3 H 0.056 0.944
4 C 0.145 3.855
5 N -0.742 5.742
6 C -0.245 4.245
7 H 0.077 0.923
8 C -0.071 4.071
9 N -0.965 5.965
10 Si 0.970 3.030
11 H -0.284 1.284
12 H -0.300 1.300
13 H -0.273 1.273
14 N -0.708 5.708
15 C 0.507 3.493
16 O -0.590 6.590
17 C -0.131 4.131
18 C -0.096 4.096
19 C 0.104 3.896
20 H 0.166 0.834
21 N -0.701 5.701
22 C 0.706 3.294
23 O -0.584 6.584
24 N -0.673 5.673
25 C 0.532 3.468
26 O -0.495 6.495
27 H 0.073 0.927
28 H 0.051 0.949
29 H 0.074 0.926
30 H 0.032 0.968
31 H 0.041 0.959
32 H 0.376 0.624
33 H 0.250 0.750
34 H 0.411 0.589
35 H 0.121 0.879
36 H 0.127 0.873
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.453 0.547
40 H 0.439 0.561
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.622 -2.977 -14.678 17.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.034 3.966
3 H 0.074 0.926
4 C 0.018 3.982
5 N -0.386 5.386
6 C -0.376 4.376
7 H 0.095 0.905
8 C -0.263 4.263
9 N -0.615 5.615
10 Si 0.800 3.200
11 H -0.211 1.211
12 H -0.227 1.227
13 H -0.198 1.198
14 N -0.359 5.359
15 C 0.295 3.705
16 O -0.472 6.472
17 C -0.171 4.171
18 C -0.135 4.135
19 C -0.005 4.005
20 H 0.183 0.817
21 N -0.367 5.367
22 C 0.405 3.595
23 O -0.461 6.461
24 N -0.343 5.343
25 C 0.319 3.681
26 O -0.366 6.366
27 H 0.092 0.908
28 H 0.070 0.930
29 H 0.093 0.907
30 H 0.050 0.950
31 H 0.059 0.941
32 H 0.208 0.792
33 H 0.059 0.941
34 H 0.247 0.753
35 H 0.139 0.861
36 H 0.145 0.855
37 H 0.090 0.910
38 H 0.100 0.900
39 H 0.301 0.699
40 H 0.283 0.717
Dipole moment (debyes) X Y Z Total
from point charges -9.859 -2.053 -14.824 17.922
hybrid contribution 0.843 -0.440 0.390 1.028
sum -9.016 -2.493 -14.435 17.201
Atomic orbital electron populations
1.21990 0.92941 1.03075 1.02408 1.21027 0.95139 0.96081 0.84377
0.92612 1.21118 0.84089 0.97991 0.94955 1.42510 1.01795 1.69897
1.24363 1.19606 0.89872 1.28384 0.99779 0.90545 1.25494 0.97460
1.02964 1.00406 1.69805 1.07016 1.52588 1.32140 0.85193 0.77580
0.77953 0.79300 1.21129 1.22684 1.19813 1.45986 1.66232 1.14682
1.09020 1.21238 0.76607 0.86970 0.85703 1.90680 1.52513 1.17958
1.85999 1.21653 1.05569 0.99457 0.90394 1.21392 1.03090 0.98051
0.90937 1.22199 0.97644 0.87856 0.92799 0.81736 1.45535 1.46708
1.28400 1.16069 1.15915 0.80179 0.80475 0.82911 1.91049 1.37542
1.56293 1.61177 1.44261 1.43015 1.25310 1.21735 1.20990 0.77223
0.84686 0.85189 1.90870 1.41816 1.24072 1.79801 0.90757 0.92980
0.90686 0.94995 0.94069 0.79209 0.94075 0.75254 0.86138 0.85508
0.91044 0.89951 0.69930 0.71737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.47 9.48 71.98 0.68 -2.78 16
2 C 0.14 4.26 2.73 44.99 0.12 4.38 16
3 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16
4 C 0.15 5.16 5.82 86.38 0.50 5.67 16
5 N -0.74 -34.70 5.43 -343.46 -1.87 -36.56 16
6 C -0.24 -12.80 9.99 84.03 0.84 -11.96 16
7 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16
8 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16
9 N -0.96 -56.09 13.06 21.65 0.28 -55.81 16
10 Si 0.97 44.04 29.55 68.60 2.03 46.06 16
11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
12 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16
13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
14 N -0.71 -19.07 4.52 -442.54 -2.00 -21.07 16
15 C 0.51 13.52 7.79 87.65 0.68 14.20 16
16 O -0.59 -20.74 15.64 -3.03 -0.05 -20.78 16
17 C -0.13 -2.01 5.60 29.85 0.17 -1.84 16
18 C -0.10 -1.55 4.28 30.59 0.13 -1.42 16
19 C 0.10 1.17 3.70 44.37 0.16 1.33 16
20 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16
21 N -0.70 -7.14 5.94 -459.60 -2.73 -9.87 16
22 C 0.71 11.53 8.99 179.44 1.61 13.14 16
23 O -0.58 -14.09 18.04 -3.83 -0.07 -14.16 16
24 N -0.67 -9.38 5.70 -441.12 -2.52 -11.89 16
25 C 0.53 8.67 8.14 87.94 0.72 9.39 16
26 O -0.49 -11.68 18.02 -2.87 -0.05 -11.73 16
27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16
30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
32 H 0.38 18.93 7.33 -92.70 -0.68 18.25 16
33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
34 H 0.41 9.88 8.60 -92.71 -0.80 9.08 16
35 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16
36 H 0.13 1.05 7.36 -2.39 -0.02 1.03 16
37 H 0.07 1.33 8.10 -2.39 -0.02 1.32 16
38 H 0.08 1.72 8.10 -2.38 -0.02 1.70 16
39 H 0.45 2.64 8.37 -92.71 -0.78 1.86 16
40 H 0.44 4.73 8.96 -92.71 -0.83 3.90 16
Total: -1.00 -76.54 346.81 -2.85 -79.39
By element:
Atomic # 1 Polarization: 31.66 SS G_CDS: -1.97 Total: 29.70 kcal
Atomic # 6 Polarization: 20.64 SS G_CDS: 6.09 Total: 26.73 kcal
Atomic # 7 Polarization: -126.37 SS G_CDS: -8.83 Total: -135.20 kcal
Atomic # 8 Polarization: -46.51 SS G_CDS: -0.17 Total: -46.67 kcal
Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal
Total: -76.54 -2.85 -79.39 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699429532.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.288 kcal
(2) G-P(sol) polarization free energy of solvation -76.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds