Wall clock time and date at job start Tue Mar 31 2020 03:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46956 * 2 1 4 4 C 1.53006 * 109.47137 * 240.00532 * 2 1 3 5 5 N 1.46496 * 109.47020 * 184.99657 * 4 2 1 6 6 C 1.46506 * 120.00056 * 269.99841 * 5 4 2 7 7 C 1.36939 * 119.99722 * 90.00106 * 5 4 2 8 8 H 1.07997 * 120.00351 * 337.98720 * 7 5 4 9 9 C 1.38811 * 119.99744 * 157.70961 * 7 5 4 10 10 N 1.31616 * 120.00173 * 155.58113 * 9 7 5 11 11 Si 1.86803 * 120.00117 * 335.58254 * 9 7 5 12 12 H 1.48500 * 109.47031 * 84.81040 * 11 9 7 13 13 H 1.48504 * 109.47169 * 204.80993 * 11 9 7 14 14 H 1.48493 * 109.47076 * 324.80757 * 11 9 7 15 15 N 1.46495 * 109.47554 * 120.00589 * 2 1 3 16 16 C 1.34778 * 119.99827 * 275.00480 * 15 2 1 17 17 O 1.21284 * 119.99886 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00063 * 180.02562 * 16 15 2 19 19 N 1.46497 * 109.47342 * 179.97438 * 18 16 15 20 20 C 1.34765 * 124.17655 * 269.72497 * 19 18 16 21 21 O 1.21240 * 127.15807 * 359.97438 * 20 19 18 22 22 C 1.51585 * 105.68663 * 179.97438 * 20 19 18 23 23 N 1.47310 * 103.59120 * 0.32028 * 22 20 19 24 24 C 1.33789 * 124.18226 * 90.01698 * 19 18 16 25 25 O 1.21537 * 123.76923 * 359.97237 * 24 19 18 26 26 H 1.09003 * 109.46995 * 299.99613 * 1 2 3 27 27 H 1.08997 * 109.47634 * 59.99247 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47019 * 64.99903 * 4 2 1 30 30 H 1.08993 * 109.46718 * 304.99771 * 4 2 1 31 31 H 1.08996 * 109.46982 * 274.42357 * 6 5 4 32 32 H 1.08998 * 109.46993 * 34.42428 * 6 5 4 33 33 H 1.09003 * 109.46785 * 154.42395 * 6 5 4 34 34 H 0.96999 * 120.00801 * 180.02562 * 10 9 7 35 35 H 0.96994 * 120.00391 * 94.99408 * 15 2 1 36 36 H 1.09000 * 109.46781 * 299.99398 * 18 16 15 37 37 H 1.09001 * 109.47575 * 59.99254 * 18 16 15 38 38 H 1.09001 * 110.76747 * 241.71367 * 22 20 19 39 39 H 1.08996 * 110.56260 * 118.82986 * 22 20 19 40 40 H 0.97005 * 126.68883 * 179.77236 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2343 -1.7614 7 6 4.0849 -1.9157 -0.6025 8 1 3.5312 -2.5055 0.1129 9 6 5.3877 -2.2655 -0.9302 10 7 6.1160 -2.9596 -0.0816 11 14 6.1072 -1.7510 -2.5755 12 1 6.6508 -0.3731 -2.4688 13 1 7.1979 -2.6856 -2.9528 14 1 5.0451 -1.7852 -3.6127 15 7 2.0184 -0.6907 1.1960 16 6 2.1470 -0.0184 2.3571 17 8 1.8589 1.1584 2.4115 18 6 2.6500 -0.7288 3.5873 19 7 2.6997 0.2126 4.7087 20 6 3.7742 0.9645 5.0189 21 8 4.8417 0.9884 4.4447 22 6 3.3705 1.7742 6.2351 23 7 1.9881 1.3383 6.4980 24 6 1.6860 0.4279 5.5549 25 8 0.6126 -0.1374 5.4809 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7516 -0.1581 -2.1370 30 1 1.6054 -1.7196 -1.2953 31 1 4.4772 0.0508 -2.8262 32 1 3.8436 1.1975 -1.6214 33 1 5.3026 0.2437 -1.2610 34 1 7.0265 -3.2038 -0.3104 35 1 2.2490 -1.6318 1.1524 36 1 1.9778 -1.5511 3.8323 37 1 3.6494 -1.1205 3.3977 38 1 3.4009 2.8416 6.0163 39 1 4.0144 1.5391 7.0825 40 1 1.4087 1.6477 7.2118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699470385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:04 Heat of formation + Delta-G solvation = -40.767931 kcal Electronic energy + Delta-G solvation = -25263.578056 eV Core-core repulsion = 21501.920481 eV Total energy + Delta-G solvation = -3761.657575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.33183 -39.25867 -38.52442 -36.65551 -36.09439 -34.63140 -34.09548 -31.71975 -30.74487 -28.42060 -27.41046 -26.80192 -25.68403 -22.94089 -22.42298 -21.30585 -20.09590 -19.85486 -18.07736 -17.69581 -16.84848 -16.74316 -16.12704 -15.98607 -15.41409 -15.28894 -15.00886 -14.67513 -14.19041 -14.12551 -14.03623 -13.73242 -13.45673 -13.13284 -12.66020 -12.57413 -12.41557 -12.08037 -11.83523 -11.70168 -11.15236 -11.01663 -10.90726 -10.48761 -10.32237 -10.26618 -10.23004 -10.08343 -9.66681 -9.52496 -9.20575 -8.65089 -8.48713 -7.07039 -6.01512 -3.32630 1.66063 2.07985 2.94467 3.02116 3.08224 3.34981 3.49275 3.51440 3.74311 3.94910 4.52446 4.70632 4.83684 4.90789 5.08025 5.10511 5.32496 5.39715 5.45896 5.49351 5.60427 5.74327 5.79257 5.99272 6.09995 6.25561 6.27737 6.41467 6.49071 6.61220 6.69629 6.77086 6.99692 7.05138 7.38138 7.82575 7.99905 8.08654 8.21367 8.66162 8.87824 9.67704 10.01156 11.13597 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.004787 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.216579 B = 5848.216956 C = 6739.098554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.609 5.609 6 C 0.105 3.895 7 C -0.266 4.266 8 H 0.085 0.915 9 C 0.027 3.973 10 N -0.901 5.901 11 Si 0.887 3.113 12 H -0.287 1.287 13 H -0.306 1.306 14 H -0.279 1.279 15 N -0.689 5.689 16 C 0.506 3.494 17 O -0.554 6.554 18 C 0.098 3.902 19 N -0.558 5.558 20 C 0.521 3.479 21 O -0.456 6.456 22 C 0.067 3.933 23 N -0.730 5.730 24 C 0.709 3.291 25 O -0.545 6.545 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.008 0.992 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.263 0.737 35 H 0.408 0.592 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 7.327 11.181 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.332 5.332 6 C -0.040 4.040 7 C -0.394 4.394 8 H 0.103 0.897 9 C -0.172 4.172 10 N -0.543 5.543 11 Si 0.718 3.282 12 H -0.215 1.215 13 H -0.235 1.235 14 H -0.205 1.205 15 N -0.341 5.341 16 C 0.290 3.710 17 O -0.432 6.432 18 C -0.027 4.027 19 N -0.304 5.304 20 C 0.308 3.692 21 O -0.324 6.324 22 C -0.061 4.061 23 N -0.395 5.395 24 C 0.409 3.591 25 O -0.418 6.418 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -8.021 7.699 10.769 15.479 hybrid contribution 0.477 -0.002 -0.711 0.856 sum -7.544 7.698 10.058 14.742 Atomic orbital electron populations 1.22122 0.96185 1.01718 1.01757 1.21756 0.92452 0.98136 0.86300 0.90502 1.21117 0.84893 0.99045 0.93599 1.44109 0.99939 1.20550 1.68578 1.21370 0.96267 0.90585 0.95818 1.18720 0.97397 1.05092 1.18163 0.89723 1.25134 0.96481 0.97711 0.97923 1.69866 1.08749 1.41751 1.33907 0.87013 0.77848 0.76614 0.86710 1.21457 1.23464 1.20531 1.45829 1.65127 1.14656 1.08440 1.20492 0.77926 0.87540 0.85012 1.90643 1.51380 1.15920 1.85300 1.21530 1.06506 0.91177 0.83457 1.45792 1.15207 1.40923 1.28474 1.20861 0.83514 0.79614 0.85219 1.90893 1.22659 1.63405 1.55452 1.22435 0.84298 1.01629 0.97764 1.45329 1.16131 1.44772 1.33312 1.15757 0.83380 0.80340 0.79585 1.90999 1.22629 1.53398 1.74782 0.92728 0.92095 0.92610 0.92699 0.92011 0.97458 0.95010 0.92093 0.92716 0.75487 0.85945 0.84967 0.85981 0.86001 0.71659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.12 2.09 2.88 -67.93 -0.20 1.89 16 3 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 4 C 0.14 2.55 5.34 -4.04 -0.02 2.53 16 5 N -0.61 -13.69 2.63 -181.12 -0.48 -14.17 16 6 C 0.10 2.31 8.33 59.85 0.50 2.80 16 7 C -0.27 -6.81 9.23 -15.06 -0.14 -6.95 16 8 H 0.09 2.17 6.41 -52.49 -0.34 1.84 16 9 C 0.03 0.75 5.16 -17.43 -0.09 0.66 16 10 N -0.90 -26.35 13.97 55.49 0.78 -25.57 16 11 Si 0.89 22.20 24.05 -169.99 -4.09 18.12 16 12 H -0.29 -7.03 6.34 56.52 0.36 -6.67 16 13 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 14 H -0.28 -6.95 6.92 56.52 0.39 -6.55 16 15 N -0.69 -12.25 4.49 -53.80 -0.24 -12.50 16 16 C 0.51 9.36 7.86 -10.98 -0.09 9.27 16 17 O -0.55 -11.75 16.09 5.55 0.09 -11.66 16 18 C 0.10 1.52 6.18 -5.20 -0.03 1.49 16 19 N -0.56 -8.21 2.09 -122.02 -0.26 -8.47 16 20 C 0.52 7.20 8.31 -10.55 -0.09 7.11 16 21 O -0.46 -8.04 17.75 5.59 0.10 -7.94 16 22 C 0.07 0.52 7.97 -4.32 -0.03 0.49 16 23 N -0.73 -6.53 6.58 -65.74 -0.43 -6.96 16 24 C 0.71 9.89 8.62 -88.02 -0.76 9.13 16 25 O -0.54 -9.31 17.48 5.33 0.09 -9.22 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 31 H 0.01 0.17 5.83 -51.93 -0.30 -0.14 16 32 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.06 1.47 5.70 -51.93 -0.30 1.17 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.41 7.14 6.51 -40.82 -0.27 6.87 16 36 H 0.12 1.63 7.86 -51.93 -0.41 1.22 16 37 H 0.13 2.08 8.00 -51.93 -0.42 1.66 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.44 2.58 8.96 -40.82 -0.37 2.22 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -36.23 334.98 -5.33 -41.56 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.34 Total: 5.27 kcal Atomic # 6 Polarization: 27.10 SS G_CDS: -0.59 Total: 26.50 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.63 Total: -67.67 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: 0.28 Total: -28.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.09 Total: 18.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.23 -5.33 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699470385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.789 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds