Wall clock time and date at job start Tue Mar 31 2020 03:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99403 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00159 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.46572 * 40.01736 * 9 7 6 11 11 C 1.53037 * 109.46665 * 280.04406 * 9 7 6 12 12 C 1.50802 * 109.18643 * 286.68489 * 11 9 7 13 13 O 1.21236 * 120.01992 * 145.78491 * 12 11 9 14 14 N 1.34565 * 119.96390 * 325.76361 * 12 11 9 15 15 C 1.34340 * 120.98928 * 4.43502 * 14 12 11 16 16 O 1.21533 * 119.20934 * 192.04388 * 15 14 12 17 17 N 1.34295 * 121.57716 * 12.01829 * 15 14 12 18 18 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 19 19 C 1.36938 * 119.99589 * 275.00203 * 18 2 1 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 2 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 2 22 22 N 1.31617 * 120.00325 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99550 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47397 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.46813 * 210.00284 * 23 21 19 26 26 H 1.48495 * 109.47179 * 329.99902 * 23 21 19 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 29 29 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 30 30 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 31 31 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 32 32 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 33 33 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 34 34 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 35 35 H 1.09006 * 109.51718 * 46.59129 * 11 9 7 36 36 H 1.08997 * 109.52295 * 166.76514 * 11 9 7 37 37 H 0.97003 * 119.50336 * 184.45903 * 14 12 11 38 38 H 0.96996 * 119.53016 * 185.66772 * 17 15 14 39 39 H 0.96995 * 120.00050 * 94.72411 * 18 2 1 40 40 H 0.97000 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1584 -0.8003 -2.0238 9 6 5.8763 -2.0498 -4.0058 10 1 5.2041 -1.8503 -4.8403 11 6 5.9262 -3.5562 -3.7405 12 6 7.0838 -3.8597 -2.8228 13 8 6.9950 -4.7548 -2.0101 14 7 8.2156 -3.1366 -2.9069 15 6 8.3044 -2.0850 -3.7381 16 8 9.3935 -1.5915 -3.9559 17 7 7.2187 -1.5663 -4.3345 18 7 2.0184 -0.6907 1.1962 19 6 2.1491 -0.0076 2.3758 20 1 1.8926 1.0404 2.4242 21 6 2.6113 -0.6622 3.5092 22 7 2.9244 -1.9392 3.4501 23 14 2.7904 0.2699 5.1182 24 1 1.5227 0.1796 5.8863 25 1 3.8947 -0.3240 5.9140 26 1 3.0963 1.6948 4.8334 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8532 0.4370 -1.3573 33 1 3.9994 -1.0728 -0.4259 34 1 3.4259 -1.7349 -3.1112 35 1 4.9957 -3.8741 -3.2702 36 1 6.0593 -4.0878 -4.6827 37 1 8.9788 -3.3786 -2.3593 38 1 7.3253 -0.8612 -4.9919 39 1 2.2453 -1.6328 1.1535 40 1 3.2471 -2.3966 4.2423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753014587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:07 Heat of formation + Delta-G solvation = -90.292202 kcal Electronic energy + Delta-G solvation = -24355.363751 eV Core-core repulsion = 20591.558643 eV Total energy + Delta-G solvation = -3763.805109 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06168 -39.63406 -39.03291 -36.80635 -35.99427 -34.57643 -34.48267 -32.35604 -31.35978 -29.37749 -28.21857 -26.11649 -23.90080 -23.70093 -22.73052 -21.34530 -20.29443 -19.68281 -18.49695 -18.20177 -17.38919 -17.22037 -16.63473 -16.22755 -15.75020 -15.56119 -15.01324 -14.85037 -14.61430 -14.30841 -13.99105 -13.75260 -13.51374 -13.23320 -12.77264 -12.63056 -12.53286 -12.09598 -11.59797 -11.17203 -11.05561 -10.95956 -10.78383 -10.70141 -10.60651 -10.51103 -10.40853 -10.30426 -9.99043 -9.65568 -9.45078 -9.05531 -8.89907 -6.96773 -5.75567 -3.04820 1.47369 2.12663 2.40352 2.64837 2.96320 3.12581 3.45127 3.50619 3.52475 3.86280 4.01290 4.33349 4.46886 4.60463 4.68831 4.88376 5.19347 5.31855 5.51807 5.58963 5.62943 5.81368 5.96555 5.99310 6.11277 6.24830 6.32004 6.36157 6.40760 6.53555 6.63471 6.81896 6.96541 7.01971 7.24906 7.36323 7.71314 7.91303 8.05469 8.42491 9.54041 10.09828 10.44042 11.46901 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.003599 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.233181 B = 7778.001438 C = 8541.610291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.482 3.518 8 O -0.515 6.515 9 C 0.121 3.879 10 H 0.135 0.865 11 C -0.149 4.149 12 C 0.522 3.478 13 O -0.490 6.490 14 N -0.670 5.670 15 C 0.726 3.274 16 O -0.556 6.556 17 N -0.707 5.707 18 N -0.724 5.724 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.398 0.602 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.428 0.572 38 H 0.427 0.573 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -2.430 -22.611 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.372 5.372 7 C 0.264 3.736 8 O -0.389 6.389 9 C 0.011 3.989 10 H 0.152 0.848 11 C -0.190 4.190 12 C 0.309 3.691 13 O -0.361 6.361 14 N -0.340 5.340 15 C 0.427 3.573 16 O -0.431 6.431 17 N -0.366 5.366 18 N -0.366 5.366 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.231 0.769 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.270 0.730 38 H 0.267 0.733 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.667 -2.211 -21.558 21.834 hybrid contribution -0.021 0.173 0.736 0.756 sum 2.646 -2.038 -20.822 21.088 Atomic orbital electron populations 1.22431 0.99111 1.00848 0.99993 1.20150 0.91907 0.95572 0.86015 0.93306 1.22064 0.93599 1.01929 0.99478 1.21533 0.94650 0.97209 0.86799 1.46096 1.06631 1.56678 1.27767 1.20911 0.83308 0.81819 0.87535 1.90820 1.55111 1.44533 1.48447 1.21104 0.86233 0.93126 0.98450 0.84761 1.22249 0.99596 0.94812 1.02345 1.20736 0.83496 0.81222 0.83614 1.90845 1.80818 1.29842 1.34557 1.44147 1.18001 1.29276 1.42563 1.15502 0.84478 0.79469 0.77897 1.91036 1.25716 1.62052 1.64265 1.44709 1.03299 1.42652 1.45908 1.42452 1.78198 1.10548 1.05374 1.19207 1.36804 0.93850 0.87346 0.91217 1.24725 1.02000 0.95941 0.98051 1.69648 1.50725 1.08679 1.28892 0.86229 0.77254 0.78888 0.84055 1.21778 1.21788 1.20756 0.93504 0.92698 0.94583 0.91478 0.91831 0.91596 0.89528 0.76852 0.84990 0.85388 0.73028 0.73304 0.78295 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.17 3.16 2.89 -67.92 -0.20 2.97 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.79 4.87 -26.73 -0.13 -1.92 16 5 C 0.12 1.79 5.56 -4.04 -0.02 1.77 16 6 N -0.72 -7.44 5.56 -60.30 -0.33 -7.78 16 7 C 0.48 5.62 6.71 -10.99 -0.07 5.55 16 8 O -0.51 -8.98 16.15 5.56 0.09 -8.89 16 9 C 0.12 0.77 3.63 -69.12 -0.25 0.52 16 10 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 11 C -0.15 -0.93 5.71 -27.81 -0.16 -1.09 16 12 C 0.52 5.95 7.44 -11.03 -0.08 5.86 16 13 O -0.49 -7.47 17.93 5.60 0.10 -7.37 16 14 N -0.67 -7.70 5.18 -16.02 -0.08 -7.78 16 15 C 0.73 8.61 7.98 -87.74 -0.70 7.91 16 16 O -0.56 -8.40 17.97 5.34 0.10 -8.31 16 17 N -0.71 -5.79 4.91 -60.12 -0.29 -6.08 16 18 N -0.72 -17.31 4.57 -53.42 -0.24 -17.55 16 19 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 23 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.70 7.75 -51.93 -0.40 1.30 16 34 H 0.40 2.43 8.47 -40.82 -0.35 2.08 16 35 H 0.13 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.43 4.71 8.86 -40.82 -0.36 4.35 16 38 H 0.43 2.60 8.90 -40.82 -0.36 2.24 16 39 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -38.91 345.12 -6.84 -45.74 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.56 Total: 10.66 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.51 Total: 12.06 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.23 Total: -66.71 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.29 Total: -24.57 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -38.91 -6.84 -45.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.550 kcal (2) G-P(sol) polarization free energy of solvation -38.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds