Wall clock time and date at job start Tue Mar 31 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99403 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00159 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.46572 * 40.01736 * 9 7 6 11 11 C 1.53037 * 109.46665 * 280.04406 * 9 7 6 12 12 C 1.50802 * 109.18643 * 286.68489 * 11 9 7 13 13 O 1.21236 * 120.01992 * 145.78491 * 12 11 9 14 14 N 1.34565 * 119.96390 * 325.76361 * 12 11 9 15 15 C 1.34340 * 120.98928 * 4.43502 * 14 12 11 16 16 O 1.21533 * 119.20934 * 192.04388 * 15 14 12 17 17 N 1.34295 * 121.57716 * 12.01829 * 15 14 12 18 18 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 19 19 C 1.36938 * 119.99589 * 275.00203 * 18 2 1 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 2 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 2 22 22 N 1.31617 * 120.00325 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99550 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47397 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.46813 * 210.00284 * 23 21 19 26 26 H 1.48495 * 109.47179 * 329.99902 * 23 21 19 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 29 29 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 30 30 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 31 31 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 32 32 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 33 33 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 34 34 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 35 35 H 1.09006 * 109.51718 * 46.59129 * 11 9 7 36 36 H 1.08997 * 109.52295 * 166.76514 * 11 9 7 37 37 H 0.97003 * 119.50336 * 184.45903 * 14 12 11 38 38 H 0.96996 * 119.53016 * 185.66772 * 17 15 14 39 39 H 0.96995 * 120.00050 * 94.72411 * 18 2 1 40 40 H 0.97000 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1584 -0.8003 -2.0238 9 6 5.8763 -2.0498 -4.0058 10 1 5.2041 -1.8503 -4.8403 11 6 5.9262 -3.5562 -3.7405 12 6 7.0838 -3.8597 -2.8228 13 8 6.9950 -4.7548 -2.0101 14 7 8.2156 -3.1366 -2.9069 15 6 8.3044 -2.0850 -3.7381 16 8 9.3935 -1.5915 -3.9559 17 7 7.2187 -1.5663 -4.3345 18 7 2.0184 -0.6907 1.1962 19 6 2.1491 -0.0076 2.3758 20 1 1.8926 1.0404 2.4242 21 6 2.6113 -0.6622 3.5092 22 7 2.9244 -1.9392 3.4501 23 14 2.7904 0.2699 5.1182 24 1 1.5227 0.1796 5.8863 25 1 3.8947 -0.3240 5.9140 26 1 3.0963 1.6948 4.8334 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8532 0.4370 -1.3573 33 1 3.9994 -1.0728 -0.4259 34 1 3.4259 -1.7349 -3.1112 35 1 4.9957 -3.8741 -3.2702 36 1 6.0593 -4.0878 -4.6827 37 1 8.9788 -3.3786 -2.3593 38 1 7.3253 -0.8612 -4.9919 39 1 2.2453 -1.6328 1.1535 40 1 3.2471 -2.3966 4.2423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753014587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:05 Heat of formation + Delta-G solvation = -126.018193 kcal Electronic energy + Delta-G solvation = -24356.912947 eV Core-core repulsion = 20591.558643 eV Total energy + Delta-G solvation = -3765.354304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -42.90363 -40.63533 -39.99860 -38.18611 -36.95326 -35.88135 -35.38501 -34.16113 -32.18014 -30.95009 -29.61090 -26.93092 -25.79575 -24.61945 -23.96630 -22.30514 -21.48235 -20.73520 -19.40502 -19.28064 -19.00215 -18.18523 -17.50339 -17.17837 -16.95262 -16.66219 -16.41991 -15.84107 -15.70950 -15.47838 -15.35573 -15.21491 -14.63332 -14.47637 -14.10311 -13.55612 -13.45983 -13.35462 -13.22227 -12.82983 -12.62244 -12.28621 -12.21428 -12.12318 -11.97085 -11.69657 -11.59818 -11.51542 -11.41235 -11.38536 -10.94953 -10.31208 -10.11660 -8.97611 -7.94014 -5.20108 0.59206 1.32990 1.44151 1.45858 1.52937 1.53467 1.82740 2.15998 2.31854 2.55877 3.25399 3.38432 3.40849 3.62753 3.94536 4.03726 4.09680 4.20871 4.25142 4.40659 4.48894 4.69240 4.81261 4.82782 4.91300 5.06217 5.13035 5.16192 5.25066 5.43344 5.44421 5.54248 5.64792 5.74692 6.14044 6.29480 6.39924 6.53774 7.06623 7.23985 7.35625 8.15358 8.34853 9.29459 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.003599 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.233181 B = 7778.001438 C = 8541.610291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.699 5.699 7 C 0.473 3.527 8 O -0.583 6.583 9 C 0.135 3.865 10 H 0.209 0.791 11 C -0.142 4.142 12 C 0.512 3.488 13 O -0.540 6.540 14 N -0.677 5.677 15 C 0.723 3.277 16 O -0.597 6.597 17 N -0.691 5.691 18 N -0.736 5.736 19 C -0.232 4.232 20 H 0.074 0.926 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.271 1.271 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.424 0.576 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.423 0.577 38 H 0.439 0.561 39 H 0.371 0.629 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -1.929 -26.143 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.058 0.942 4 C -0.153 4.153 5 C 0.007 3.993 6 N -0.353 5.353 7 C 0.258 3.742 8 O -0.462 6.462 9 C 0.026 3.974 10 H 0.226 0.774 11 C -0.182 4.182 12 C 0.302 3.698 13 O -0.415 6.415 14 N -0.344 5.344 15 C 0.423 3.577 16 O -0.475 6.475 17 N -0.350 5.350 18 N -0.376 5.376 19 C -0.365 4.365 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.229 1.229 26 H -0.196 1.196 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.165 0.835 36 H 0.197 0.803 37 H 0.263 0.737 38 H 0.281 0.719 39 H 0.203 0.797 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.296 -1.668 -25.195 25.252 hybrid contribution 0.662 0.084 1.772 1.893 sum 0.957 -1.584 -23.423 23.496 Atomic orbital electron populations 1.22266 0.97134 1.01074 1.00845 1.20504 0.93159 0.95191 0.85877 0.94183 1.21914 0.92256 1.02261 0.98841 1.21080 0.95477 0.96107 0.86627 1.45796 1.07090 1.55860 1.26508 1.22021 0.82896 0.80889 0.88444 1.90810 1.56758 1.47534 1.51069 1.21444 0.85972 0.92122 0.97856 0.77438 1.22490 0.97462 0.94886 1.03323 1.21860 0.84316 0.80042 0.83569 1.90823 1.81697 1.32058 1.36921 1.44300 1.18362 1.29422 1.42328 1.15723 0.84927 0.79301 0.77734 1.91003 1.27608 1.63169 1.65687 1.44681 1.03117 1.42292 1.44903 1.42668 1.78469 1.10137 1.06371 1.19600 1.34246 0.94070 0.88546 0.90845 1.25456 1.03388 0.96812 1.01273 1.69800 1.53015 1.10191 1.29122 0.85280 0.76829 0.78092 0.80486 1.21210 1.22851 1.19634 0.93559 0.95235 0.90326 0.90670 0.86927 0.93154 0.95338 0.73672 0.83525 0.80259 0.73705 0.71888 0.79678 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.49 71.98 0.68 -4.00 16 2 C 0.16 5.62 2.89 44.99 0.13 5.75 16 3 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 4 C -0.11 -2.77 4.87 30.60 0.15 -2.62 16 5 C 0.13 3.80 5.56 86.38 0.48 4.28 16 6 N -0.70 -12.36 5.56 -463.07 -2.57 -14.93 16 7 C 0.47 9.99 6.71 87.65 0.59 10.58 16 8 O -0.58 -20.59 16.15 -3.03 -0.05 -20.64 16 9 C 0.13 1.11 3.63 44.27 0.16 1.27 16 10 H 0.21 -1.16 8.14 -2.39 -0.02 -1.18 16 11 C -0.14 -1.18 5.71 29.89 0.17 -1.01 16 12 C 0.51 11.31 7.44 87.72 0.65 11.96 16 13 O -0.54 -16.89 17.93 -2.89 -0.05 -16.94 16 14 N -0.68 -15.83 5.18 -441.65 -2.29 -18.11 16 15 C 0.72 16.78 7.98 179.34 1.43 18.22 16 16 O -0.60 -18.36 17.97 -3.82 -0.07 -18.42 16 17 N -0.69 -9.41 4.91 -462.66 -2.27 -11.68 16 18 N -0.74 -35.62 4.57 -322.92 -1.48 -37.10 16 19 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 23 Si 0.96 47.60 29.55 68.60 2.03 49.62 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 26 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.16 7.75 -2.39 -0.02 1.14 16 34 H 0.42 2.90 8.47 -92.71 -0.79 2.11 16 35 H 0.15 0.92 8.07 -2.38 -0.02 0.90 16 36 H 0.18 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.42 10.12 8.86 -92.71 -0.82 9.30 16 38 H 0.44 3.96 8.90 -92.71 -0.83 3.13 16 39 H 0.37 19.54 7.80 -92.71 -0.72 18.81 16 40 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -94.31 345.12 -2.76 -97.06 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -2.04 Total: 23.43 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 5.75 Total: 28.31 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -8.32 Total: -142.42 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.17 Total: -56.01 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -94.31 -2.76 -97.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.954 kcal (2) G-P(sol) polarization free energy of solvation -94.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds