Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99592 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00712 * 180.02562 * 18 17 16 21 21 C 1.47155 * 120.97772 * 359.71606 * 20 18 17 22 22 C 1.53709 * 108.16221 * 129.43139 * 21 20 18 23 23 O 1.42966 * 109.14880 * 52.53760 * 22 21 20 24 24 C 1.42964 * 114.16860 * 297.29077 * 23 22 21 25 25 C 1.47147 * 120.98659 * 179.97438 * 20 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 1.08995 * 109.68429 * 249.21491 * 21 20 18 38 38 H 1.09006 * 109.68194 * 9.77028 * 21 20 18 39 39 H 1.09000 * 109.66253 * 292.57598 * 22 21 20 40 40 H 1.08999 * 109.49420 * 172.39862 * 22 21 20 41 41 H 1.08994 * 109.51239 * 302.65810 * 24 23 22 42 42 H 1.08995 * 109.55889 * 182.52425 * 24 23 22 43 43 H 1.09000 * 109.68575 * 350.23693 * 25 20 18 44 44 H 1.09000 * 109.67939 * 110.79279 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 8 4.3549 -1.6555 -5.5691 20 7 5.4241 0.1602 -6.2634 21 6 5.7885 1.5705 -6.0545 22 6 7.3122 1.6998 -6.2101 23 8 7.7073 1.1203 -7.4559 24 6 7.4391 -0.2800 -7.5613 25 6 5.9268 -0.5124 -7.4717 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 5.2869 2.1929 -6.7955 38 1 5.4930 1.8816 -5.0525 39 1 7.8099 1.1787 -5.3922 40 1 7.5914 2.7533 -6.1939 41 1 7.9370 -0.8082 -6.7483 42 1 7.8086 -0.6513 -8.5171 43 1 5.7229 -1.5813 -7.4087 44 1 5.4390 -0.0964 -8.3532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -113.841099 kcal Electronic energy + Delta-G solvation = -24645.756474 eV Core-core repulsion = 20984.470552 eV Total energy + Delta-G solvation = -3661.285922 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.58261 -39.16070 -38.40571 -35.38532 -35.00992 -33.13141 -32.61582 -31.56602 -29.47151 -28.23179 -26.12987 -25.49416 -25.17526 -24.18169 -22.29423 -20.81590 -19.26761 -18.34416 -17.53388 -16.79904 -16.51212 -16.27188 -16.15869 -15.67721 -15.50879 -15.35483 -15.04939 -14.77600 -14.20195 -13.80111 -13.70760 -12.99566 -12.91279 -12.63959 -12.45804 -12.30968 -12.08989 -11.86072 -11.77167 -11.53334 -11.32630 -11.11548 -11.09651 -11.01587 -10.80099 -10.67906 -10.54400 -10.26085 -10.17023 -9.89873 -9.18184 -8.92884 -8.86950 -8.42875 -7.57839 -6.07704 -4.15599 2.47101 2.59055 3.25952 3.32770 3.35061 3.40871 3.42744 3.93432 4.32962 4.36766 4.43179 4.61514 4.68473 4.83713 4.87955 4.96930 5.12836 5.17984 5.22399 5.23379 5.32021 5.37081 5.44424 5.54364 5.67307 5.84226 5.96544 6.02506 6.10820 6.15220 6.41783 6.68562 6.76162 6.84546 7.06239 7.07718 7.43089 7.53907 7.71998 7.96475 8.01827 8.20330 8.54374 8.82860 9.05499 9.50923 10.97605 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.002887 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.998998 B = 9695.808177 C = 9928.665244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.503 3.497 15 O -0.559 6.559 16 C -0.123 4.123 17 C -0.122 4.122 18 C 0.520 3.480 19 O -0.539 6.539 20 N -0.622 5.622 21 C 0.070 3.930 22 C 0.046 3.954 23 O -0.381 6.381 24 C 0.048 3.952 25 C 0.076 3.924 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.263 0.737 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -1.358 -18.606 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.290 3.710 15 O -0.440 6.440 16 C -0.164 4.164 17 C -0.162 4.162 18 C 0.309 3.691 19 O -0.416 6.416 20 N -0.357 5.357 21 C -0.054 4.054 22 C -0.031 4.031 23 O -0.299 6.299 24 C -0.030 4.030 25 C -0.047 4.047 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.369 -1.166 -18.568 20.831 hybrid contribution 0.096 -0.677 1.073 1.273 sum 9.465 -1.843 -17.495 19.976 Atomic orbital electron populations 1.22082 0.98229 0.99411 1.00745 1.18935 0.90866 0.94526 0.79988 0.91902 1.21334 1.31807 1.12995 0.90339 0.92238 1.24898 0.94964 0.94967 0.98967 1.69883 1.36408 1.22583 1.23737 0.86494 0.79201 0.79302 0.82389 1.20612 1.19927 1.21105 1.48230 1.48801 1.11719 1.23479 1.21629 0.99016 0.83207 1.02343 1.20359 0.79241 0.87085 0.84338 1.90629 1.58892 1.17218 1.77217 1.21405 1.00895 0.98914 0.95181 1.21405 1.01773 0.99591 0.93424 1.20963 0.77151 0.86794 0.84154 1.90685 1.57350 1.16967 1.76594 1.48173 1.51769 1.12481 1.23320 1.22606 0.96492 0.82046 1.04222 1.23090 0.93349 0.99973 0.86720 1.87963 1.82919 1.22631 1.36427 1.22985 0.94415 0.82556 1.03006 1.22258 0.94640 1.00284 0.87482 0.95164 0.88870 0.97056 0.92695 0.93835 0.92534 0.90135 0.88766 0.88892 0.88049 0.88037 0.90202 0.87836 0.92299 0.87365 0.92546 0.87635 0.88035 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.58 2.64 -69.09 -0.18 6.39 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.23 7.99 -34.44 -0.28 -14.50 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.59 -12.68 2.75 -175.26 -0.48 -13.16 16 13 C 0.08 1.41 9.24 59.85 0.55 1.97 16 14 C 0.50 10.18 7.67 -10.99 -0.08 10.10 16 15 O -0.56 -13.12 15.31 5.56 0.09 -13.04 16 16 C -0.12 -1.89 3.54 -27.89 -0.10 -1.99 16 17 C -0.12 -1.60 3.36 -27.89 -0.09 -1.69 16 18 C 0.52 6.73 7.71 -10.99 -0.08 6.65 16 19 O -0.54 -8.54 15.45 5.55 0.09 -8.45 16 20 N -0.62 -6.46 3.01 -172.04 -0.52 -6.98 16 21 C 0.07 0.56 6.57 -3.32 -0.02 0.54 16 22 C 0.05 0.34 7.00 37.53 0.26 0.61 16 23 O -0.38 -3.45 10.74 -35.23 -0.38 -3.83 16 24 C 0.05 0.37 6.98 37.29 0.26 0.63 16 25 C 0.08 0.68 6.63 -3.55 -0.02 0.66 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.82 6.44 -51.92 -0.33 0.49 16 32 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 33 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 34 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 35 H 0.10 1.28 7.96 -51.93 -0.41 0.86 16 36 H 0.10 1.29 7.62 -51.93 -0.40 0.90 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.79 6.05 -51.93 -0.31 0.47 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.99 7.08 -51.93 -0.37 0.62 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -33.27 352.08 -6.81 -40.08 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.96 Total: 0.74 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 0.45 Total: 7.82 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.37 Total: -44.61 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.21 Total: -25.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.27 -6.81 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.765 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds