Wall clock time and date at job start Tue Mar 31 2020 03:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.63020 * 2 1 4 4 H 1.09001 * 109.50447 * 59.99281 * 3 2 1 5 5 C 1.53125 * 109.50211 * 299.92316 * 3 2 1 6 6 C 1.53118 * 109.15746 * 182.44669 * 5 3 2 7 7 C 1.53032 * 109.31433 * 57.58782 * 6 5 3 8 8 N 1.46845 * 109.52579 * 300.84641 * 7 6 5 9 9 C 1.46899 * 111.00136 * 185.83764 * 8 7 6 10 10 C 1.50704 * 109.47228 * 65.78669 * 9 8 7 11 11 O 1.21300 * 120.00018 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99793 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00147 * 180.02562 * 13 12 10 16 16 N 1.31404 * 119.99899 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00104 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47490 * 89.99738 * 17 15 13 19 19 H 1.48499 * 109.46917 * 209.99700 * 17 15 13 20 20 H 1.48503 * 109.47152 * 329.99345 * 17 15 13 21 21 C 1.46844 * 111.19871 * 61.73772 * 8 7 6 22 22 O 1.43361 * 109.63143 * 239.60289 * 2 1 3 23 23 C 1.43895 * 107.45174 * 240.74621 * 22 2 1 24 24 C 1.54916 * 103.01571 * 21.54692 * 23 22 2 25 25 O 1.43754 * 109.62965 * 120.39083 * 2 1 3 26 26 H 1.09001 * 109.47002 * 59.99940 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00206 * 1 2 3 29 29 H 1.08998 * 109.51801 * 302.30826 * 5 3 2 30 30 H 1.08993 * 109.52563 * 62.49780 * 5 3 2 31 31 H 1.08998 * 109.46922 * 297.65013 * 6 5 3 32 32 H 1.09001 * 109.50631 * 177.55595 * 6 5 3 33 33 H 1.09003 * 109.46692 * 180.82460 * 7 6 5 34 34 H 1.09007 * 109.45126 * 60.85493 * 7 6 5 35 35 H 1.09001 * 109.47165 * 185.78789 * 9 8 7 36 36 H 1.08998 * 109.47560 * 305.78892 * 9 8 7 37 37 H 0.96990 * 120.00109 * 359.97438 * 12 10 9 38 38 H 0.97010 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.45781 * 178.24491 * 21 8 7 40 40 H 1.08996 * 109.46495 * 58.27774 * 21 8 7 41 41 H 1.08991 * 110.77115 * 263.14632 * 23 22 2 42 42 H 1.09000 * 110.82676 * 139.96442 * 23 22 2 43 43 H 1.09000 * 110.97936 * 206.27978 * 24 23 22 44 44 H 1.09001 * 110.97895 * 82.48831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0441 1.4411 0.0000 4 1 1.6823 1.9565 0.8897 5 6 1.5376 2.1644 -1.2510 6 6 2.1061 3.5860 -1.2742 7 6 3.6346 3.5205 -1.2391 8 7 4.0681 2.8205 -0.0232 9 6 5.5302 2.8596 0.1138 10 6 5.9762 4.2821 0.3342 11 8 5.1568 5.1756 0.3728 12 7 7.2858 4.5617 0.4874 13 6 7.6915 5.8557 0.6884 14 1 6.9617 6.6512 0.7236 15 6 9.0416 6.1440 0.8458 16 7 9.9295 5.1763 0.8025 17 14 9.5943 7.9071 1.1204 18 1 9.6172 8.1977 2.5765 19 1 10.9558 8.0924 0.5572 20 1 8.6494 8.8329 0.4456 21 6 3.5743 1.4377 -0.0020 22 8 2.0117 -0.6832 -1.1647 23 6 2.7885 -1.8079 -0.7149 24 6 2.2652 -2.0400 0.7246 25 8 2.0130 -0.6850 1.1679 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8660 1.6269 -2.1405 30 1 0.4487 2.2072 -1.2313 31 1 1.7455 4.1357 -0.4048 32 1 1.7843 4.0919 -2.1845 33 1 4.0417 4.5316 -1.2408 34 1 3.9951 2.9825 -2.1160 35 1 5.8318 2.2483 0.9644 36 1 5.9908 2.4710 -0.7944 37 1 7.9411 3.8473 0.4562 38 1 10.8720 5.3775 0.9128 39 1 3.9376 0.9362 0.8951 40 1 3.9352 0.9096 -0.8845 41 1 3.8508 -1.5643 -0.7039 42 1 2.6015 -2.6822 -1.3383 43 1 3.0245 -2.5181 1.3435 44 1 1.3456 -2.6253 0.7159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183832639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:21 Heat of formation + Delta-G solvation = -122.383963 kcal Electronic energy + Delta-G solvation = -25430.421593 eV Core-core repulsion = 21768.765224 eV Total energy + Delta-G solvation = -3661.656369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02568 -38.89546 -37.42958 -35.18065 -34.22619 -33.57263 -31.88376 -31.12634 -29.68000 -28.74152 -27.22128 -24.65712 -23.78874 -23.42796 -22.51472 -20.98371 -19.49294 -19.09734 -17.82124 -17.45541 -16.72074 -16.03919 -15.78718 -15.26775 -14.84600 -14.69593 -14.49262 -14.18500 -13.92872 -13.83994 -13.63402 -13.24356 -13.16831 -13.04278 -12.85142 -12.45845 -12.26083 -12.09697 -11.87823 -11.68565 -11.45081 -11.30275 -11.05332 -10.97329 -10.50465 -10.44329 -10.38673 -10.35003 -10.19136 -10.12406 -9.63700 -9.40483 -8.33459 -7.91856 -7.72430 -6.37243 -3.77701 3.18455 3.20966 3.29112 3.35038 3.71448 3.96641 4.04587 4.27420 4.33489 4.56898 4.67942 4.74749 4.92531 4.96363 5.08695 5.15969 5.19070 5.26954 5.30457 5.36745 5.41326 5.50305 5.63453 5.67003 5.71840 5.78734 5.82187 5.88269 5.90069 5.98348 6.06473 6.13040 6.19989 6.29850 6.35587 6.58673 6.65834 6.95512 7.43943 7.56447 7.59820 8.11791 8.67464 9.23085 9.60137 10.12448 10.80701 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.003209 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.938533 B = 8723.067073 C = 9300.035892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.260 3.740 3 C -0.082 4.082 4 H 0.094 0.906 5 C -0.110 4.110 6 C -0.112 4.112 7 C 0.051 3.949 8 N -0.514 5.514 9 C 0.048 3.952 10 C 0.446 3.554 11 O -0.576 6.576 12 N -0.566 5.566 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.067 3.933 22 O -0.374 6.374 23 C 0.020 3.980 24 C 0.015 3.985 25 O -0.367 6.367 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.019 0.981 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 -15.986 -3.538 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.183 3.817 3 C -0.101 4.101 4 H 0.112 0.888 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.076 4.076 8 N -0.239 5.239 9 C -0.084 4.084 10 C 0.231 3.769 11 O -0.460 6.460 12 N -0.203 5.203 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.545 5.545 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.061 4.061 22 O -0.295 6.295 23 C -0.057 4.057 24 C -0.062 4.062 25 O -0.287 6.287 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.654 -14.952 -3.095 21.868 hybrid contribution 1.240 -0.372 -0.475 1.379 sum -14.414 -15.323 -3.570 21.338 Atomic orbital electron populations 1.22386 0.93804 1.02877 1.03691 1.23445 0.92673 0.91048 0.74527 1.21464 0.96249 0.91932 1.00486 0.88809 1.21619 0.99816 0.96304 0.97058 1.21535 0.95482 0.95863 1.02096 1.22264 0.95228 1.01220 0.88897 1.61466 1.09823 1.13549 1.39012 1.21815 0.88107 0.97407 1.01049 1.19766 0.83248 0.89605 0.84281 1.90480 1.52223 1.47684 1.55619 1.41867 1.05520 1.09602 1.63284 1.19698 0.92148 0.84993 1.45833 0.87935 1.25246 0.95587 0.99636 0.97534 1.69615 1.02206 1.32198 1.50466 0.85866 0.77805 0.82110 0.78549 1.20432 1.21002 1.19444 1.21975 0.93907 0.89632 1.00612 1.88829 1.69261 1.41757 1.29651 1.24120 0.96868 0.89782 0.94914 1.24356 1.01249 0.85439 0.95137 1.89304 1.86003 1.21415 1.32014 0.90346 0.92139 0.90487 0.91579 0.91883 0.90930 0.91736 0.87926 0.96235 0.89503 0.93698 0.77536 0.91950 0.90738 0.95077 0.90633 0.88532 0.87448 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.85 37.16 0.33 -1.27 16 2 C 0.26 2.97 0.73 -26.73 -0.02 2.95 16 3 C -0.08 -1.08 2.00 -90.54 -0.18 -1.26 16 4 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 5 C -0.11 -1.37 4.75 -26.61 -0.13 -1.50 16 6 C -0.11 -1.60 6.09 -26.65 -0.16 -1.77 16 7 C 0.05 0.90 5.11 -3.84 -0.02 0.88 16 8 N -0.51 -9.26 4.40 -236.12 -1.04 -10.29 16 9 C 0.05 0.91 5.45 -4.97 -0.03 0.88 16 10 C 0.45 10.82 7.46 -10.98 -0.08 10.74 16 11 O -0.58 -15.77 13.90 5.54 0.08 -15.69 16 12 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 13 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 14 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 17 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.07 1.00 4.45 -3.84 -0.02 0.98 16 22 O -0.37 -4.28 9.46 -59.05 -0.56 -4.84 16 23 C 0.02 0.17 8.07 38.17 0.31 0.48 16 24 C 0.01 0.12 7.92 38.17 0.30 0.42 16 25 O -0.37 -4.31 10.35 -59.05 -0.61 -4.92 16 26 H 0.08 0.70 6.51 -51.93 -0.34 0.36 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.85 7.64 -51.93 -0.40 0.45 16 30 H 0.06 0.67 6.59 -51.93 -0.34 0.32 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 2.14 5.78 -51.93 -0.30 1.84 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 1.52 7.99 -51.93 -0.41 1.10 16 36 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 37 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 40 H 0.03 0.46 7.65 -51.93 -0.40 0.07 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.09 346.01 -8.28 -40.37 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.06 Total: 9.29 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 0.06 Total: 3.46 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.37 Total: -49.19 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.09 Total: -25.45 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.09 -8.28 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.017 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds