Wall clock time and date at job start Tue Mar 31 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.63020 * 2 1 4 4 H 1.09001 * 109.50447 * 59.99281 * 3 2 1 5 5 C 1.53125 * 109.50211 * 299.92316 * 3 2 1 6 6 C 1.53118 * 109.15746 * 182.44669 * 5 3 2 7 7 C 1.53032 * 109.31433 * 57.58782 * 6 5 3 8 8 N 1.46845 * 109.52579 * 300.84641 * 7 6 5 9 9 C 1.46899 * 111.00136 * 185.83764 * 8 7 6 10 10 C 1.50704 * 109.47228 * 65.78669 * 9 8 7 11 11 O 1.21300 * 120.00018 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99793 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00147 * 180.02562 * 13 12 10 16 16 N 1.31404 * 119.99899 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00104 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47490 * 89.99738 * 17 15 13 19 19 H 1.48499 * 109.46917 * 209.99700 * 17 15 13 20 20 H 1.48503 * 109.47152 * 329.99345 * 17 15 13 21 21 C 1.46844 * 111.19871 * 61.73772 * 8 7 6 22 22 O 1.43361 * 109.63143 * 239.60289 * 2 1 3 23 23 C 1.43895 * 107.45174 * 240.74621 * 22 2 1 24 24 C 1.54916 * 103.01571 * 21.54692 * 23 22 2 25 25 O 1.43754 * 109.62965 * 120.39083 * 2 1 3 26 26 H 1.09001 * 109.47002 * 59.99940 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00206 * 1 2 3 29 29 H 1.08998 * 109.51801 * 302.30826 * 5 3 2 30 30 H 1.08993 * 109.52563 * 62.49780 * 5 3 2 31 31 H 1.08998 * 109.46922 * 297.65013 * 6 5 3 32 32 H 1.09001 * 109.50631 * 177.55595 * 6 5 3 33 33 H 1.09003 * 109.46692 * 180.82460 * 7 6 5 34 34 H 1.09007 * 109.45126 * 60.85493 * 7 6 5 35 35 H 1.09001 * 109.47165 * 185.78789 * 9 8 7 36 36 H 1.08998 * 109.47560 * 305.78892 * 9 8 7 37 37 H 0.96990 * 120.00109 * 359.97438 * 12 10 9 38 38 H 0.97010 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.45781 * 178.24491 * 21 8 7 40 40 H 1.08996 * 109.46495 * 58.27774 * 21 8 7 41 41 H 1.08991 * 110.77115 * 263.14632 * 23 22 2 42 42 H 1.09000 * 110.82676 * 139.96442 * 23 22 2 43 43 H 1.09000 * 110.97936 * 206.27978 * 24 23 22 44 44 H 1.09001 * 110.97895 * 82.48831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0441 1.4411 0.0000 4 1 1.6823 1.9565 0.8897 5 6 1.5376 2.1644 -1.2510 6 6 2.1061 3.5860 -1.2742 7 6 3.6346 3.5205 -1.2391 8 7 4.0681 2.8205 -0.0232 9 6 5.5302 2.8596 0.1138 10 6 5.9762 4.2821 0.3342 11 8 5.1568 5.1756 0.3728 12 7 7.2858 4.5617 0.4874 13 6 7.6915 5.8557 0.6884 14 1 6.9617 6.6512 0.7236 15 6 9.0416 6.1440 0.8458 16 7 9.9295 5.1763 0.8025 17 14 9.5943 7.9071 1.1204 18 1 9.6172 8.1977 2.5765 19 1 10.9558 8.0924 0.5572 20 1 8.6494 8.8329 0.4456 21 6 3.5743 1.4377 -0.0020 22 8 2.0117 -0.6832 -1.1647 23 6 2.7885 -1.8079 -0.7149 24 6 2.2652 -2.0400 0.7246 25 8 2.0130 -0.6850 1.1679 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8660 1.6269 -2.1405 30 1 0.4487 2.2072 -1.2313 31 1 1.7455 4.1357 -0.4048 32 1 1.7843 4.0919 -2.1845 33 1 4.0417 4.5316 -1.2408 34 1 3.9951 2.9825 -2.1160 35 1 5.8318 2.2483 0.9644 36 1 5.9908 2.4710 -0.7944 37 1 7.9411 3.8473 0.4562 38 1 10.8720 5.3775 0.9128 39 1 3.9376 0.9362 0.8951 40 1 3.9352 0.9096 -0.8845 41 1 3.8508 -1.5643 -0.7039 42 1 2.6015 -2.6822 -1.3383 43 1 3.0245 -2.5181 1.3435 44 1 1.3456 -2.6253 0.7159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183832639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:20 Heat of formation + Delta-G solvation = -145.623389 kcal Electronic energy + Delta-G solvation = -25431.429330 eV Core-core repulsion = 21768.765224 eV Total energy + Delta-G solvation = -3662.664106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86401 -40.49061 -38.98888 -36.05107 -35.94416 -35.01729 -33.32692 -32.85318 -30.71952 -29.49109 -28.75726 -26.48847 -24.93525 -24.19959 -23.71235 -22.08298 -20.96637 -20.58969 -19.86559 -18.25463 -17.80982 -17.49912 -16.83394 -16.57577 -16.37480 -16.17942 -15.77628 -15.56613 -15.36026 -15.03154 -14.83582 -14.55411 -14.32927 -14.04168 -13.81160 -13.71305 -13.48333 -13.39148 -13.11875 -12.96634 -12.75950 -12.66531 -12.46668 -12.41449 -12.12320 -12.09162 -11.75018 -11.60098 -11.40378 -11.28731 -11.04630 -10.55320 -10.19274 -9.99482 -9.20296 -8.46223 -5.94941 1.37986 1.41355 1.54383 2.04661 2.28198 2.48310 2.68853 2.98697 3.20182 3.37532 3.69384 3.71097 3.79137 3.95973 4.05337 4.10522 4.17025 4.30586 4.34653 4.35600 4.42477 4.48697 4.53057 4.55647 4.64328 4.69533 4.75491 4.77569 4.86426 4.93035 4.98903 5.03117 5.03836 5.14543 5.16194 5.35430 5.41139 5.47312 5.90438 6.10302 6.19432 6.24260 6.60981 7.13047 7.56092 8.12088 8.71389 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.003209 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.938533 B = 8723.067073 C = 9300.035892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.262 3.738 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.100 4.100 6 C -0.107 4.107 7 C 0.053 3.947 8 N -0.532 5.532 9 C 0.058 3.942 10 C 0.442 3.558 11 O -0.611 6.611 12 N -0.574 5.574 13 C -0.332 4.332 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.922 5.922 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.273 1.273 21 C 0.074 3.926 22 O -0.389 6.389 23 C 0.014 3.986 24 C 0.012 3.988 25 O -0.391 6.391 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.760 -17.478 -3.865 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.185 3.815 3 C -0.103 4.103 4 H 0.099 0.901 5 C -0.138 4.138 6 C -0.145 4.145 7 C -0.075 4.075 8 N -0.256 5.256 9 C -0.073 4.073 10 C 0.230 3.770 11 O -0.497 6.497 12 N -0.212 5.212 13 C -0.462 4.462 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.563 5.563 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.053 4.053 22 O -0.310 6.310 23 C -0.062 4.062 24 C -0.064 4.064 25 O -0.312 6.312 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.309 -16.483 -3.424 23.439 hybrid contribution 1.454 0.035 -0.373 1.502 sum -14.855 -16.448 -3.797 22.486 Atomic orbital electron populations 1.22365 0.92194 1.03821 1.04058 1.23372 0.93667 0.89765 0.74691 1.21468 0.94777 0.93753 1.00256 0.90131 1.21548 1.01109 0.94469 0.96649 1.21506 0.93170 0.97512 1.02317 1.22174 0.97317 0.98957 0.89034 1.61462 1.08952 1.15688 1.39543 1.21692 0.89314 0.93713 1.02551 1.20686 0.82378 0.91533 0.82429 1.90457 1.53009 1.49549 1.56679 1.41924 1.06278 1.09052 1.63904 1.19669 0.92548 0.85670 1.48289 0.90288 1.26045 0.95044 1.03736 0.96478 1.69678 1.02651 1.33864 1.50076 0.84918 0.77624 0.77062 0.78670 1.19646 1.19493 1.19736 1.21957 0.95270 0.87528 1.00564 1.88808 1.69691 1.42675 1.29843 1.24325 0.96349 0.89824 0.95734 1.24597 1.02635 0.84138 0.95001 1.89278 1.86241 1.23255 1.32436 0.89705 0.90944 0.90374 0.91489 0.89502 0.92355 0.90022 0.91953 0.95523 0.87687 0.91982 0.77113 0.91311 0.90946 0.94706 0.91146 0.85999 0.85875 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.85 71.98 0.64 -2.11 16 2 C 0.26 5.48 0.73 30.60 0.02 5.51 16 3 C -0.08 -2.10 2.00 -10.74 -0.02 -2.12 16 4 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 5 C -0.10 -2.32 4.75 30.68 0.15 -2.17 16 6 C -0.11 -3.02 6.09 30.64 0.19 -2.84 16 7 C 0.05 1.87 5.11 86.32 0.44 2.31 16 8 N -0.53 -19.18 4.40 -900.95 -3.96 -23.14 16 9 C 0.06 2.23 5.45 85.56 0.47 2.70 16 10 C 0.44 22.12 7.46 87.66 0.65 22.77 16 11 O -0.61 -34.86 13.90 -3.09 -0.04 -34.90 16 12 N -0.57 -30.53 5.29 -306.97 -1.62 -32.15 16 13 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 14 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 15 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 16 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 17 Si 0.99 43.71 29.55 68.60 2.03 45.73 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 C 0.07 2.15 4.45 86.32 0.38 2.54 16 22 O -0.39 -8.00 9.46 -126.20 -1.19 -9.19 16 23 C 0.01 0.20 8.07 72.64 0.59 0.78 16 24 C 0.01 0.16 7.92 72.64 0.58 0.74 16 25 O -0.39 -8.50 10.35 -126.20 -1.31 -9.81 16 26 H 0.08 1.27 6.51 -2.39 -0.02 1.25 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.57 7.64 -2.39 -0.02 1.55 16 30 H 0.09 1.62 6.59 -2.39 -0.02 1.60 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.72 5.78 -2.39 -0.01 2.70 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.11 3.61 7.99 -2.39 -0.02 3.59 16 36 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 37 H 0.40 20.01 7.90 -92.72 -0.73 19.27 16 38 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 39 H 0.07 2.11 7.58 -2.39 -0.02 2.10 16 40 H 0.03 0.99 7.65 -2.39 -0.02 0.97 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.15 346.01 -0.20 -70.35 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.26 Total: 34.15 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.36 Total: 9.34 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -5.30 Total: -105.67 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -2.54 Total: -53.90 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.15 -0.20 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.273 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds