Wall clock time and date at job start Tue Mar 31 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99494 * 2 1 4 4 C 1.53005 * 109.46917 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46625 * 65.00313 * 4 3 2 6 6 C 1.34779 * 119.99677 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00111 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.49652 * 59.93328 * 8 6 5 10 10 C 1.53038 * 109.50204 * 180.02562 * 8 6 5 11 11 C 1.53036 * 109.53797 * 58.57971 * 10 8 6 12 12 C 1.53190 * 109.31107 * 61.37186 * 11 10 8 13 13 H 1.09007 * 109.59051 * 65.29165 * 12 11 10 14 14 C 1.52998 * 109.58989 * 185.57261 * 12 11 10 15 15 N 1.46922 * 108.89556 * 305.43151 * 12 11 10 16 16 C 1.34769 * 120.63492 * 233.53769 * 15 12 11 17 17 O 1.21688 * 120.00072 * 5.08223 * 16 15 12 18 18 C 1.46383 * 120.00278 * 185.07760 * 16 15 12 19 19 H 1.08004 * 119.99416 * 8.73742 * 18 16 15 20 20 C 1.40045 * 120.00026 * 188.72951 * 18 16 15 21 21 N 1.30673 * 120.00119 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46904 * 90.00250 * 22 20 18 24 24 H 1.48494 * 109.47518 * 210.00614 * 22 20 18 25 25 H 1.48504 * 109.46970 * 330.00601 * 22 20 18 26 26 C 1.46966 * 118.71335 * 53.35663 * 15 12 11 27 27 H 1.08995 * 109.47588 * 299.99451 * 1 2 3 28 28 H 1.08995 * 109.46979 * 60.00223 * 1 2 3 29 29 H 1.09003 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46784 * 60.00544 * 3 2 1 31 31 H 1.08990 * 109.47460 * 300.00185 * 3 2 1 32 32 H 1.08995 * 109.47126 * 305.00229 * 4 3 2 33 33 H 1.09002 * 109.46782 * 185.00139 * 4 3 2 34 34 H 0.96994 * 120.00113 * 0.02562 * 5 4 3 35 35 H 1.09004 * 109.45190 * 298.56463 * 10 8 6 36 36 H 1.08993 * 109.44879 * 178.60323 * 10 8 6 37 37 H 1.08996 * 109.50103 * 301.42072 * 11 10 8 38 38 H 1.09004 * 109.52589 * 181.33544 * 11 10 8 39 39 H 1.09005 * 109.47119 * 62.95667 * 14 12 11 40 40 H 1.09004 * 109.47227 * 302.95830 * 14 12 11 41 41 H 1.08997 * 109.47327 * 182.95581 * 14 12 11 42 42 H 0.97001 * 120.00067 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.59727 * 186.78604 * 26 15 12 44 44 H 1.09008 * 109.58183 * 66.50208 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2510 6 6 5.2895 0.3563 -1.4739 7 8 6.1055 0.6826 -0.6381 8 6 5.7434 -0.2816 -2.7615 9 1 5.4269 0.3338 -3.6036 10 6 7.2690 -0.4028 -2.7615 11 6 7.7160 -1.2389 -1.5603 12 6 7.1193 -2.6454 -1.6719 13 1 7.5373 -3.1518 -2.5420 14 6 7.4466 -3.4433 -0.4081 15 7 5.6619 -2.5336 -1.8201 16 6 4.8342 -3.2006 -0.9917 17 8 5.2885 -3.8293 -0.0541 18 6 3.3885 -3.1687 -1.2196 19 1 2.9943 -2.7322 -2.1254 20 6 2.5169 -3.7042 -0.2632 21 7 2.9940 -4.2319 0.8329 22 14 0.6721 -3.6628 -0.5537 23 1 0.2550 -4.8987 -1.2634 24 1 -0.0327 -3.5792 0.7507 25 1 0.3275 -2.4776 -1.3794 26 6 5.1243 -1.6773 -2.8867 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8508 0.5687 0.8426 33 1 3.9783 2.1767 0.0902 34 1 3.3239 0.3036 -1.9195 35 1 7.7121 0.5910 -2.6973 36 1 7.5945 -0.8867 -3.6823 37 1 7.3691 -0.7686 -0.6403 38 1 8.8039 -1.3053 -1.5472 39 1 6.9792 -2.9666 0.4537 40 1 8.5269 -3.4718 -0.2659 41 1 7.0667 -4.4596 -0.5114 42 1 2.3903 -4.6025 1.4955 43 1 4.0411 -1.6067 -2.7878 44 1 5.3756 -2.1027 -3.8583 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330885651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:25 Heat of formation + Delta-G solvation = -128.889113 kcal Electronic energy + Delta-G solvation = -26974.972283 eV Core-core repulsion = 23313.033830 eV Total energy + Delta-G solvation = -3661.938453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49270 -39.78532 -38.81798 -37.19644 -35.67596 -34.72611 -33.56984 -33.11518 -30.77502 -28.70118 -27.80812 -27.14128 -25.36686 -24.23041 -23.25077 -22.48554 -21.04999 -20.37657 -18.53260 -17.69950 -17.48780 -17.39919 -17.21050 -16.55676 -16.22972 -16.06810 -15.82779 -15.61086 -15.29719 -14.95044 -14.68023 -14.47190 -14.19801 -13.81175 -13.45492 -13.32141 -13.10543 -12.98615 -12.91562 -12.84599 -12.71440 -12.45715 -12.32175 -12.26590 -12.05999 -11.88032 -11.64858 -11.54563 -11.29474 -10.79156 -10.62228 -10.40726 -9.89725 -9.13333 -8.86874 -8.09576 -6.65036 1.38014 1.41730 1.55372 1.80871 2.30225 2.43120 2.62522 2.88364 2.92645 3.74497 3.78876 3.95280 4.01721 4.06053 4.19187 4.23180 4.35097 4.40231 4.47991 4.51081 4.55716 4.56832 4.63784 4.75574 4.83162 4.85756 4.90849 4.92847 4.98000 5.01147 5.11280 5.20382 5.36610 5.47271 5.53916 5.63155 5.77283 5.87973 6.27444 6.31862 6.56264 6.71777 7.04512 7.45558 7.60442 8.64703 8.83533 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.008330 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.860275 B = 3360.516786 C = 4809.400114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.055 3.945 4 C 0.126 3.874 5 N -0.711 5.711 6 C 0.519 3.481 7 O -0.584 6.584 8 C -0.120 4.120 9 H 0.145 0.855 10 C -0.087 4.087 11 C -0.139 4.139 12 C 0.146 3.854 13 H 0.067 0.933 14 C -0.104 4.104 15 N -0.641 5.641 16 C 0.544 3.456 17 O -0.617 6.617 18 C -0.545 4.545 19 H 0.090 0.910 20 C 0.042 3.958 21 N -0.829 5.829 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.222 1.222 26 C 0.125 3.875 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.410 0.590 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.021 0.979 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 13.669 -10.684 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C -0.022 4.022 4 C 0.001 3.999 5 N -0.362 5.362 6 C 0.307 3.693 7 O -0.465 6.465 8 C -0.142 4.142 9 H 0.163 0.837 10 C -0.124 4.124 11 C -0.177 4.177 12 C 0.042 3.958 13 H 0.085 0.915 14 C -0.161 4.161 15 N -0.378 5.378 16 C 0.350 3.650 17 O -0.504 6.504 18 C -0.582 4.582 19 H 0.108 0.892 20 C -0.172 4.172 21 N -0.459 5.459 22 Si 0.792 3.208 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.145 1.145 26 C 0.002 3.998 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.111 0.889 34 H 0.246 0.754 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.997 13.332 -9.417 16.595 hybrid contribution -1.127 -0.462 0.581 1.350 sum -4.124 12.870 -8.835 16.146 Atomic orbital electron populations 1.22931 0.80320 1.02439 1.01629 1.88126 1.20772 1.28386 1.95596 1.22842 0.91132 0.85155 1.03026 1.21279 0.94011 0.97942 0.86631 1.45765 1.07526 1.62524 1.20402 1.21038 0.82064 0.76834 0.89321 1.90553 1.53886 1.53342 1.48698 1.21895 0.98546 0.97831 0.95904 0.83707 1.21251 0.92490 1.00419 0.98264 1.22165 1.00125 0.94807 1.00606 1.21056 0.81984 0.95792 0.96948 0.91510 1.21777 0.97043 0.99803 0.97456 1.48100 1.04567 1.50109 1.35072 1.18606 0.87780 0.78150 0.80509 1.90613 1.77324 1.48518 1.33939 1.21255 0.89488 1.41007 1.06413 0.89222 1.26715 1.05409 0.91661 0.93419 1.70211 1.37577 1.30118 1.08019 0.85497 0.76755 0.80029 0.78499 1.20276 1.20900 1.14471 1.21650 0.99481 0.87606 0.91085 0.92583 0.91463 0.91667 0.90250 0.89657 0.95642 0.88897 0.75368 0.91036 0.88709 0.92660 0.90696 0.95959 0.93826 0.94486 0.92597 0.89282 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.99 113.37 1.25 1.80 16 2 O -0.41 -13.18 10.65 -148.98 -1.59 -14.77 16 3 C 0.05 1.30 6.07 71.98 0.44 1.74 16 4 C 0.13 3.85 6.06 86.38 0.52 4.37 16 5 N -0.71 -22.36 5.36 -463.05 -2.48 -24.85 16 6 C 0.52 18.38 6.58 87.65 0.58 18.96 16 7 O -0.58 -25.33 13.58 -3.03 -0.04 -25.37 16 8 C -0.12 -3.32 3.02 -11.46 -0.03 -3.36 16 9 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 10 C -0.09 -2.36 5.07 30.62 0.16 -2.21 16 11 C -0.14 -5.01 5.05 30.67 0.15 -4.86 16 12 C 0.15 6.06 3.49 44.97 0.16 6.22 16 13 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 14 C -0.10 -5.02 7.59 71.98 0.55 -4.48 16 15 N -0.64 -29.03 2.69 -799.96 -2.15 -31.18 16 16 C 0.54 31.28 7.52 86.36 0.65 31.93 16 17 O -0.62 -41.26 10.47 -4.31 -0.05 -41.31 16 18 C -0.55 -29.81 8.72 24.83 0.22 -29.60 16 19 H 0.09 4.30 5.92 -2.91 -0.02 4.28 16 20 C 0.04 2.35 5.50 85.30 0.47 2.82 16 21 N -0.83 -51.97 11.87 21.83 0.26 -51.72 16 22 Si 0.97 40.83 27.96 68.60 1.92 42.75 16 23 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.22 -7.99 6.51 99.48 0.65 -7.34 16 26 C 0.13 4.14 5.64 86.36 0.49 4.62 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.80 5.72 -2.39 -0.01 1.79 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.41 11.16 7.85 -92.71 -0.73 10.43 16 35 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 2.51 5.37 -2.39 -0.01 2.50 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 39 H 0.02 1.25 6.79 -2.38 -0.02 1.24 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.04 1.99 6.70 -2.39 -0.02 1.98 16 42 H 0.26 15.41 8.29 -92.71 -0.77 14.64 16 43 H 0.09 3.03 4.77 -2.39 -0.01 3.02 16 44 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -85.54 341.84 1.68 -83.86 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.22 Total: 34.61 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 5.58 Total: 27.97 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.38 Total: -107.75 kcal Atomic # 8 Polarization: -79.77 SS G_CDS: -1.67 Total: -81.45 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.92 Total: 42.75 kcal Total: -85.54 1.68 -83.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.027 kcal (2) G-P(sol) polarization free energy of solvation -85.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds