Wall clock time and date at job start Tue Mar 31 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 C 1.53003 * 109.47320 * 240.00037 * 2 1 3 5 5 C 1.53001 * 109.47044 * 119.99604 * 2 1 3 6 6 C 1.50702 * 109.46633 * 60.00272 * 5 2 1 7 7 O 1.21285 * 120.00354 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99716 * 179.97438 * 6 5 2 9 9 C 1.46509 * 119.99788 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47132 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99855 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00197 * 179.97438 * 10 9 8 13 13 C 1.47581 * 134.49354 * 180.02562 * 12 10 9 14 14 C 1.53945 * 86.11895 * 155.35947 * 13 12 10 15 15 O 1.42904 * 113.73986 * 269.15696 * 14 13 12 16 16 C 1.50694 * 113.74220 * 137.95139 * 14 13 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47582 * 134.48982 * 359.97438 * 12 10 9 25 25 H 1.08999 * 109.47511 * 300.00207 * 1 2 3 26 26 H 1.09005 * 109.47078 * 59.99641 * 1 2 3 27 27 H 1.08993 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47254 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47116 * 299.99858 * 3 2 1 30 30 H 1.09008 * 109.46756 * 59.99620 * 3 2 1 31 31 H 1.09000 * 109.46863 * 299.99881 * 4 2 1 32 32 H 1.08998 * 109.47173 * 60.00113 * 4 2 1 33 33 H 1.08998 * 109.46870 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47582 * 300.00456 * 5 2 1 35 35 H 1.09001 * 109.47121 * 179.97438 * 5 2 1 36 36 H 0.97001 * 120.00219 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.47021 * 59.99875 * 9 8 6 38 38 H 1.09001 * 109.47026 * 299.99806 * 9 8 6 39 39 H 1.09001 * 113.77016 * 41.05438 * 13 12 10 40 40 H 1.09005 * 113.86980 * 269.67513 * 13 12 10 41 41 H 0.96699 * 113.99284 * 178.07513 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09002 * 113.76615 * 90.34214 * 24 12 10 44 44 H 1.08991 * 113.77327 * 318.94082 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2493 6 6 1.5376 -2.1420 1.2493 7 8 0.8400 -2.5386 0.3398 8 7 1.8636 -2.9720 2.2599 9 6 1.3757 -4.3535 2.2595 10 6 1.8788 -5.0642 3.4894 11 8 2.5760 -4.4747 4.2879 12 7 1.5534 -6.3546 3.7026 13 6 1.8559 -7.3360 4.7624 14 6 0.5580 -8.0436 4.3326 15 8 -0.6003 -7.6027 5.0441 16 6 0.6759 -9.5448 4.2746 17 1 1.6117 -10.0230 4.5237 18 6 -0.4109 -10.3078 3.9036 19 7 -1.5506 -9.7255 3.6008 20 14 -0.2645 -12.1686 3.8310 21 1 -1.5636 -12.7513 3.4087 22 1 0.7882 -12.5446 2.8536 23 1 0.0978 -12.6894 5.1737 24 6 0.7505 -7.3533 2.9705 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 1.6766 -0.2074 2.1393 35 1 3.1299 -0.7216 1.2491 36 1 2.4218 -2.6550 2.9870 37 1 1.7391 -4.8669 1.3694 38 1 0.2857 -4.3538 2.2597 39 1 1.8173 -6.9210 5.7696 40 1 2.7571 -7.9209 4.5778 41 1 -1.4221 -8.0236 4.7567 42 1 -2.3151 -10.2623 3.3394 43 1 1.3266 -7.9424 2.2569 44 1 -0.1704 -6.9521 2.5474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332044480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:21 Heat of formation + Delta-G solvation = -99.031210 kcal Electronic energy + Delta-G solvation = -24461.803619 eV Core-core repulsion = 20801.159902 eV Total energy + Delta-G solvation = -3660.643717 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32967 -39.52148 -37.68349 -36.59100 -34.30026 -34.02285 -32.25008 -30.05605 -28.66600 -27.33855 -27.25828 -26.61267 -25.36202 -24.79064 -20.74526 -20.28272 -19.23231 -18.37936 -17.59360 -17.09216 -16.32403 -15.91048 -15.84369 -15.27991 -15.01638 -14.83856 -14.45635 -14.39857 -14.20066 -13.83799 -13.45732 -12.89332 -12.82584 -12.53478 -12.33764 -12.24061 -12.19400 -11.95301 -11.87252 -11.59598 -11.32474 -11.20939 -11.15667 -11.07279 -10.88615 -10.77893 -10.58113 -10.34951 -9.80078 -9.54421 -9.34360 -9.06707 -8.81520 -8.51809 -7.98212 -6.43988 -4.54590 2.61467 2.93219 2.97722 3.13793 3.20228 3.22383 3.60145 4.15052 4.49745 4.65894 4.68110 4.73618 4.84504 5.08736 5.29578 5.34622 5.40011 5.46813 5.48218 5.52754 5.57770 5.63671 5.75430 5.78976 5.87111 5.96286 5.99515 6.05245 6.11008 6.22170 6.28919 6.39891 6.41912 6.48548 6.58956 6.59929 7.02392 7.52131 7.58597 7.75760 8.21831 8.30709 8.48195 8.51357 9.16689 9.39843 10.62813 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.002767 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.697040 B =10117.444242 C =10532.744458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.131 4.131 6 C 0.514 3.486 7 O -0.534 6.534 8 N -0.717 5.717 9 C 0.106 3.894 10 C 0.522 3.478 11 O -0.566 6.566 12 N -0.626 5.626 13 C 0.113 3.887 14 C 0.240 3.760 15 O -0.573 6.573 16 C -0.539 4.539 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.284 1.284 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.073 3.927 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.393 0.607 42 H 0.275 0.725 43 H 0.086 0.914 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 14.528 -6.483 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.211 4.211 5 C -0.171 4.171 6 C 0.301 3.699 7 O -0.412 6.412 8 N -0.372 5.372 9 C -0.021 4.021 10 C 0.311 3.689 11 O -0.448 6.448 12 N -0.359 5.359 13 C -0.008 4.008 14 C 0.198 3.802 15 O -0.386 6.386 16 C -0.577 4.577 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.049 4.049 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.249 0.751 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.259 15.054 -6.495 17.218 hybrid contribution -0.107 -1.154 -0.090 1.163 sum 5.152 13.899 -6.585 16.220 Atomic orbital electron populations 1.22115 0.94026 1.04267 1.00730 1.20270 0.96474 0.94398 0.94031 1.21900 1.00814 0.95367 1.01836 1.22113 0.99914 1.02989 0.96081 1.21777 1.02445 0.92331 1.00583 1.20680 0.80211 0.87683 0.81323 1.90586 1.37837 1.77304 1.35458 1.45832 1.53941 1.11260 1.26166 1.20958 1.00998 0.82821 0.97288 1.20012 0.80246 0.81656 0.86973 1.90618 1.40380 1.66022 1.47736 1.50118 1.50405 1.08259 1.27110 1.23512 0.99274 0.86465 0.91596 1.19816 0.83271 0.91382 0.85747 1.86056 1.19376 1.69603 1.63529 1.21450 0.98540 0.90390 1.47286 0.91045 1.25075 0.94845 0.99972 0.93124 1.69303 1.02166 1.36738 1.45559 0.86368 0.77593 0.83602 0.78846 1.20974 1.19876 1.19847 1.24441 0.93432 0.86663 1.00380 0.93549 0.93154 0.89633 0.92724 0.92426 0.92697 0.89663 0.93147 0.93602 0.88840 0.88890 0.75239 0.88778 0.88581 0.90981 0.89414 0.75069 0.91496 0.89617 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.18 37.16 0.30 -1.33 16 2 C -0.05 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -1.08 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.60 8.18 37.16 0.30 -1.30 16 5 C -0.13 -1.25 4.77 -27.88 -0.13 -1.38 16 6 C 0.51 6.66 7.24 -10.98 -0.08 6.58 16 7 O -0.53 -8.29 11.35 5.55 0.06 -8.22 16 8 N -0.72 -9.78 5.53 -61.47 -0.34 -10.12 16 9 C 0.11 1.66 5.90 -5.19 -0.03 1.63 16 10 C 0.52 9.82 8.13 -10.99 -0.09 9.74 16 11 O -0.57 -11.73 16.40 5.55 0.09 -11.64 16 12 N -0.63 -12.48 3.61 -178.32 -0.64 -13.13 16 13 C 0.11 2.35 8.23 -2.97 -0.02 2.33 16 14 C 0.24 5.52 1.44 -90.86 -0.13 5.39 16 15 O -0.57 -14.28 13.48 -35.23 -0.48 -14.76 16 16 C -0.54 -13.06 8.62 -34.44 -0.30 -13.35 16 17 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 19 N -0.90 -22.19 11.09 55.43 0.61 -21.58 16 20 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.07 1.50 8.00 -2.99 -0.02 1.47 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.12 5.51 -51.93 -0.29 0.84 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 1.10 5.51 -51.93 -0.29 0.81 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 5.32 7.44 -40.82 -0.30 5.02 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 41 H 0.39 9.94 6.46 45.56 0.29 10.23 16 42 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 43 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -27.49 358.70 -6.87 -34.36 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -6.46 Total: 15.61 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.10 Total: 10.06 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.37 Total: -44.83 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.32 Total: -34.62 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.49 -6.87 -34.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332044480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.674 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds