Wall clock time and date at job start Tue Mar 31 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47044 * 2 1 4 4 H 1.09006 * 109.47760 * 307.18408 * 3 2 1 5 5 C 1.52998 * 109.47451 * 187.18490 * 3 2 1 6 6 C 1.53008 * 109.47316 * 67.18311 * 3 2 1 7 7 H 1.08999 * 109.47194 * 172.94857 * 6 3 2 8 8 N 1.46500 * 109.46412 * 52.95551 * 6 3 2 9 9 C 1.34777 * 120.00204 * 97.42684 * 8 6 3 10 10 C 1.50699 * 119.99911 * 184.91218 * 9 8 6 11 11 O 1.21280 * 119.99946 * 4.90742 * 9 8 6 12 12 C 1.50699 * 109.47143 * 292.95686 * 6 3 2 13 13 O 1.21277 * 120.00206 * 116.92056 * 12 6 3 14 14 N 1.34781 * 119.99621 * 296.64098 * 12 6 3 15 15 C 1.47067 * 136.05960 * 354.56691 * 14 12 6 16 16 C 1.53231 * 88.08195 * 207.20595 * 15 14 12 17 17 O 1.42895 * 114.19877 * 87.73381 * 16 15 14 18 18 C 1.50705 * 114.32522 * 220.46906 * 16 15 14 19 19 H 1.08002 * 119.99706 * 93.75768 * 18 16 15 20 20 C 1.37876 * 120.00169 * 273.76078 * 18 16 15 21 21 N 1.31516 * 119.99790 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.46881 * 60.00665 * 22 20 18 24 24 H 1.48498 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47727 * 300.00570 * 22 20 18 26 26 C 1.47064 * 136.05394 * 174.94377 * 14 12 6 27 27 H 1.08999 * 109.47402 * 284.41573 * 1 2 3 28 28 H 1.09003 * 109.47460 * 44.41840 * 1 2 3 29 29 H 1.09000 * 109.47069 * 164.41926 * 1 2 3 30 30 H 1.09003 * 109.46847 * 240.00176 * 2 1 3 31 31 H 1.09000 * 109.46985 * 120.00156 * 2 1 3 32 32 H 1.09002 * 109.47226 * 306.39286 * 5 3 2 33 33 H 1.08998 * 109.47236 * 66.38922 * 5 3 2 34 34 H 1.08997 * 109.47447 * 186.39319 * 5 3 2 35 35 H 0.97006 * 119.99525 * 277.41723 * 8 6 3 36 36 H 1.09003 * 109.47065 * 89.99647 * 10 9 8 37 37 H 1.09001 * 109.47554 * 209.99603 * 10 9 8 38 38 H 1.09003 * 109.47326 * 329.99847 * 10 9 8 39 39 H 1.08999 * 113.46957 * 321.94459 * 15 14 12 40 40 H 1.08999 * 113.46279 * 92.37640 * 15 14 12 41 41 H 0.96695 * 114.00399 * 86.29486 * 17 16 15 42 42 H 0.97006 * 119.99754 * 180.02562 * 21 20 18 43 43 H 1.09000 * 113.46715 * 267.61922 * 26 14 12 44 44 H 1.09000 * 113.46772 * 38.00262 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5755 1.9921 -0.8187 5 6 3.5593 1.4463 -0.1804 6 6 1.6826 2.1098 1.3297 7 1 2.1521 3.0921 1.3810 8 7 2.1637 1.2802 2.4371 9 6 3.3390 1.5656 3.0319 10 6 3.8874 0.6495 4.0954 11 8 3.9553 2.5597 2.7110 12 6 0.1866 2.2621 1.4292 13 8 -0.4250 1.6849 2.3030 14 7 -0.4710 3.0444 0.5504 15 6 -0.0977 3.9567 -0.5411 16 6 -1.4005 4.7197 -0.2798 17 8 -1.2907 5.7445 0.7100 18 6 -2.1167 5.1706 -1.5268 19 1 -2.8916 4.5537 -1.9574 20 6 -1.7825 6.3704 -2.1181 21 7 -0.8385 7.1213 -1.5941 22 14 -2.6697 6.9288 -3.6642 23 1 -4.1217 7.0603 -3.3815 24 1 -2.1287 8.2418 -4.0985 25 1 -2.4639 5.9282 -4.7419 26 6 -1.8773 3.3665 0.2655 27 1 -0.3634 0.2558 0.9953 28 1 -0.3634 0.7340 -0.7193 29 1 -0.3633 -0.9899 -0.2760 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0162 0.8035 0.5721 33 1 3.8081 1.0752 -1.1746 34 1 3.9361 2.4628 -0.0671 35 1 1.6363 0.5254 2.7424 36 1 4.5153 -0.1111 3.6313 37 1 4.4810 1.2285 4.8029 38 1 3.0626 0.1685 4.6212 39 1 0.7968 4.5428 -0.3302 40 1 -0.0655 3.4743 -1.5180 41 1 -0.9901 6.5956 0.3634 42 1 -0.6036 7.9657 -2.0099 43 1 -2.3241 2.7254 -0.4945 44 1 -2.4933 3.4508 1.1607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332077628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:04 Heat of formation + Delta-G solvation = -109.912710 kcal Electronic energy + Delta-G solvation = -26164.623007 eV Core-core repulsion = 22503.507433 eV Total energy + Delta-G solvation = -3661.115574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03516 -40.66588 -39.29789 -37.44485 -35.93817 -34.54440 -34.13091 -31.81261 -30.85199 -30.43703 -28.19981 -26.92822 -26.41560 -24.43033 -22.28439 -21.98318 -20.83997 -20.15951 -19.30362 -18.38891 -17.86712 -17.49390 -17.04851 -16.88424 -16.44926 -15.98510 -15.83153 -15.44448 -15.01739 -14.88782 -14.61421 -14.32976 -14.22746 -13.94004 -13.66721 -13.61412 -13.40946 -13.33144 -13.02466 -12.96455 -12.81061 -12.74599 -12.53110 -12.23197 -12.19682 -11.99715 -11.67775 -11.47243 -11.36066 -11.00973 -10.98454 -10.67131 -10.28656 -10.09915 -9.59173 -8.27416 -6.45142 1.47405 1.48847 1.51243 1.55245 1.58545 1.76812 2.33723 2.41801 2.94642 3.28783 3.65647 3.71528 3.74825 3.89412 4.06607 4.11252 4.35139 4.35583 4.46107 4.51325 4.53921 4.62334 4.67079 4.68236 4.71984 4.76935 4.85658 4.90670 4.93815 5.02985 5.08152 5.10558 5.20087 5.23659 5.29265 5.35933 5.45061 5.72457 5.89946 6.49865 6.61202 6.79881 7.02671 7.20983 7.29228 7.46577 8.78544 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.004305 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.383855 B = 6503.144002 C = 6637.395331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.077 0.923 5 C -0.130 4.130 6 C 0.139 3.861 7 H 0.089 0.911 8 N -0.700 5.700 9 C 0.506 3.494 10 C -0.161 4.161 11 O -0.592 6.592 12 C 0.542 3.458 13 O -0.580 6.580 14 N -0.628 5.628 15 C 0.088 3.912 16 C 0.216 3.784 17 O -0.589 6.589 18 C -0.552 4.552 19 H 0.078 0.922 20 C 0.032 3.968 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.113 3.887 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.416 0.584 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.389 0.611 42 H 0.276 0.724 43 H 0.109 0.891 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -14.583 2.044 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.144 4.144 3 C -0.114 4.114 4 H 0.096 0.904 5 C -0.188 4.188 6 C 0.029 3.971 7 H 0.107 0.893 8 N -0.353 5.353 9 C 0.295 3.705 10 C -0.220 4.220 11 O -0.472 6.472 12 C 0.333 3.667 13 O -0.463 6.463 14 N -0.360 5.360 15 C -0.035 4.035 16 C 0.175 3.825 17 O -0.402 6.402 18 C -0.589 4.589 19 H 0.096 0.904 20 C -0.168 4.168 21 N -0.560 5.560 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.009 4.009 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.254 0.746 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.616 -14.628 2.794 16.727 hybrid contribution -0.580 1.065 -0.857 1.485 sum 7.037 -13.563 1.937 15.403 Atomic orbital electron populations 1.22275 0.96767 1.01991 1.02709 1.21505 0.94987 0.94449 1.03445 1.21575 0.98100 0.97806 0.93927 0.90448 1.21685 0.93119 1.01515 1.02437 1.20640 0.89568 0.97106 0.89741 0.89339 1.45769 1.22280 1.32694 1.34587 1.21743 0.79975 0.86213 0.82527 1.21900 1.03654 0.99772 0.96674 1.90713 1.60269 1.30006 1.66257 1.20306 0.89822 0.76564 0.79997 1.90580 1.70071 1.49667 1.35980 1.49602 1.10386 1.43158 1.32880 1.23964 1.01191 0.89208 0.89139 1.19813 0.91396 0.84680 0.86644 1.86031 1.90422 1.25237 1.38541 1.21642 1.21716 1.06259 1.09327 0.90394 1.25784 0.94681 0.95897 1.00463 1.69335 1.30789 1.13743 1.42181 0.85409 0.78586 0.77504 0.78972 1.19897 1.21067 1.18930 1.23313 0.83413 0.95030 0.99179 0.92234 0.93898 0.91484 0.89873 0.90650 0.92485 0.90492 0.94048 0.74615 0.86305 0.88578 0.87939 0.92916 0.88363 0.75539 0.91402 0.87358 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 8.52 71.98 0.61 -4.09 16 2 C -0.11 -2.33 5.26 30.59 0.16 -2.17 16 3 C -0.09 -2.49 2.34 -10.79 -0.03 -2.51 16 4 H 0.08 2.22 6.54 -2.38 -0.02 2.21 16 5 C -0.13 -3.12 8.37 71.98 0.60 -2.52 16 6 C 0.14 4.46 2.17 44.25 0.10 4.56 16 7 H 0.09 3.38 7.14 -2.39 -0.02 3.37 16 8 N -0.70 -18.47 3.67 -446.09 -1.64 -20.10 16 9 C 0.51 13.16 6.76 87.66 0.59 13.75 16 10 C -0.16 -2.33 10.31 71.24 0.73 -1.60 16 11 O -0.59 -20.91 16.16 -3.03 -0.05 -20.96 16 12 C 0.54 20.60 4.71 87.66 0.41 21.01 16 13 O -0.58 -23.93 14.91 -3.02 -0.05 -23.98 16 14 N -0.63 -25.22 3.23 -859.32 -2.78 -28.00 16 15 C 0.09 3.67 6.59 83.09 0.55 4.22 16 16 C 0.22 10.23 1.57 -11.29 -0.02 10.22 16 17 O -0.59 -31.28 13.54 -148.98 -2.02 -33.29 16 18 C -0.55 -26.83 8.69 25.60 0.22 -26.61 16 19 H 0.08 3.61 7.81 -2.91 -0.02 3.58 16 20 C 0.03 1.56 5.39 84.65 0.46 2.01 16 21 N -0.92 -46.59 11.01 21.45 0.24 -46.35 16 22 Si 0.97 38.70 29.54 68.60 2.03 40.72 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C 0.11 4.75 8.04 83.18 0.67 5.42 16 27 H 0.06 1.86 4.58 -2.39 -0.01 1.85 16 28 H 0.04 1.24 7.55 -2.39 -0.02 1.22 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.46 6.85 -2.39 -0.02 1.44 16 32 H 0.06 1.28 7.20 -2.39 -0.02 1.27 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.42 9.53 7.58 -92.70 -0.70 8.83 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.10 3.76 7.99 -2.39 -0.02 3.74 16 41 H 0.39 21.04 6.32 -74.06 -0.47 20.57 16 42 H 0.28 13.33 8.31 -92.70 -0.77 12.56 16 43 H 0.11 4.01 8.10 -2.39 -0.02 3.99 16 44 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -62.73 351.34 0.65 -62.08 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.15 Total: 48.19 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.06 Total: 21.69 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.18 Total: -94.46 kcal Atomic # 8 Polarization: -76.12 SS G_CDS: -2.11 Total: -78.23 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -62.73 0.65 -62.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332077628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.830 kcal (2) G-P(sol) polarization free energy of solvation -62.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds