Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.55132 * 2 1 4 4 C 1.53295 * 109.51201 * 239.87748 * 2 1 3 5 5 N 1.47151 * 108.38395 * 187.76942 * 4 2 1 6 6 C 1.34769 * 120.98183 * 230.50909 * 5 4 2 7 7 O 1.21359 * 120.00079 * 181.63558 * 6 5 4 8 8 C 1.49453 * 120.00431 * 1.64249 * 6 5 4 9 9 O 1.21349 * 119.99241 * 353.54736 * 8 6 5 10 10 N 1.34769 * 120.00210 * 173.55532 * 8 6 5 11 11 C 1.46501 * 120.00110 * 179.97438 * 10 8 6 12 12 C 1.52991 * 109.47418 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47201 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46888 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00428 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99893 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47077 * 60.00139 * 18 16 14 20 20 H 1.48503 * 109.46654 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46955 * 299.99388 * 18 16 14 22 22 C 1.47152 * 118.03523 * 50.78667 * 5 4 2 23 23 C 1.53714 * 108.16055 * 309.15505 * 22 5 4 24 24 H 1.09000 * 109.48694 * 172.39717 * 23 22 5 25 25 C 1.52996 * 109.66071 * 292.57381 * 23 22 5 26 26 O 1.42958 * 109.51488 * 120.12702 * 2 1 3 27 27 H 1.09007 * 109.47074 * 180.13171 * 1 2 3 28 28 H 1.09004 * 109.47267 * 300.12456 * 1 2 3 29 29 H 1.09002 * 109.47694 * 60.12635 * 1 2 3 30 30 H 1.09002 * 109.68483 * 68.04501 * 4 2 1 31 31 H 1.08998 * 109.68181 * 307.49240 * 4 2 1 32 32 H 0.97003 * 120.00085 * 359.97438 * 10 8 6 33 33 H 1.09003 * 109.47256 * 59.99383 * 11 10 8 34 34 H 1.09005 * 109.46813 * 300.00036 * 11 10 8 35 35 H 1.08999 * 109.47609 * 59.99954 * 12 11 10 36 36 H 1.09005 * 109.47211 * 299.99857 * 12 11 10 37 37 H 1.08996 * 109.46947 * 299.99368 * 13 12 11 38 38 H 1.08990 * 109.47184 * 59.99678 * 13 12 11 39 39 H 0.96996 * 120.00392 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.68320 * 68.93102 * 22 5 4 41 41 H 1.09000 * 109.68125 * 189.49159 * 22 5 4 42 42 H 1.08996 * 109.47352 * 179.74076 * 25 23 22 43 43 H 1.09000 * 109.47028 * 299.74081 * 25 23 22 44 44 H 1.08999 * 109.46884 * 59.74094 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0420 -0.7251 -1.2498 5 7 3.5011 -0.8760 -1.1337 6 6 4.3191 -0.5040 -2.1381 7 8 5.5178 -0.6638 -2.0353 8 6 3.7503 0.1055 -3.3784 9 8 2.5477 0.1585 -3.5318 10 7 4.5729 0.5960 -4.3266 11 6 4.0152 1.1929 -5.5428 12 6 5.1547 1.6681 -6.4464 13 6 4.5722 2.2922 -7.7162 14 6 5.6946 2.7597 -8.6065 15 1 6.7208 2.6256 -8.2974 16 6 5.4115 3.3596 -9.8152 17 7 4.1620 3.5234 -10.1914 18 14 6.8028 3.9398 -10.9185 19 1 7.6598 2.7834 -11.2840 20 1 6.2374 4.5453 -12.1510 21 1 7.6169 4.9513 -10.1980 22 6 4.0403 -1.4509 0.1090 23 6 3.4313 -0.6853 1.2947 24 1 3.7091 -1.1777 2.2266 25 6 3.9530 0.7529 1.3013 26 8 2.0075 -0.6763 1.1654 27 1 -0.3633 -1.0277 0.0024 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8911 30 1 1.8029 -0.1398 -2.1377 31 1 1.5758 -1.7078 -1.3209 32 1 5.5342 0.5538 -4.2039 33 1 3.3859 2.0418 -5.2753 34 1 3.4177 0.4499 -6.0711 35 1 5.7843 0.8196 -6.7140 36 1 5.7518 2.4113 -5.9178 37 1 3.9749 1.5494 -8.2450 38 1 3.9429 3.1407 -7.4483 39 1 3.9628 3.9451 -11.0419 40 1 3.7718 -2.5054 0.1724 41 1 5.1252 -1.3463 0.1213 42 1 3.5158 1.2941 2.1404 43 1 5.0385 0.7452 1.3999 44 1 3.6763 1.2440 0.3684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343140750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = -110.616664 kcal Electronic energy + Delta-G solvation = -24488.886872 eV Core-core repulsion = 20827.740772 eV Total energy + Delta-G solvation = -3661.146100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.26219 -39.62676 -38.35538 -36.04632 -34.85701 -33.78373 -33.36218 -31.31700 -30.62731 -27.96013 -27.21656 -26.48291 -24.34168 -23.15571 -22.28321 -20.92904 -20.34884 -19.64811 -17.90318 -17.39460 -16.83017 -16.45631 -16.39829 -15.99947 -15.39266 -15.16868 -14.98208 -14.82781 -14.47991 -14.20904 -13.98040 -13.54448 -13.22914 -12.86821 -12.68277 -12.42498 -12.31582 -12.25884 -11.92913 -11.88177 -11.84158 -11.51682 -11.31048 -10.92356 -10.86400 -10.81223 -10.64385 -10.38146 -9.95178 -9.62976 -9.24980 -9.15734 -9.05860 -8.87886 -8.40651 -6.05590 -4.08840 1.29310 2.13235 3.07669 3.27161 3.30467 3.35196 3.37343 3.42264 4.20552 4.33348 4.41924 4.43394 4.67153 4.70921 4.78937 4.99700 5.03859 5.20406 5.28997 5.30386 5.37646 5.47951 5.51392 5.54229 5.58307 5.62042 5.68311 5.79317 5.89539 5.94880 6.01018 6.32921 6.47956 6.66033 6.78683 6.86211 6.90494 7.19834 7.57593 7.60973 7.69100 7.92010 7.94553 8.33416 8.97391 9.55689 11.05648 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.002524 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.838720 B =11092.420209 C =11588.283546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.025 3.975 5 N -0.584 5.584 6 C 0.509 3.491 7 O -0.521 6.521 8 C 0.504 3.496 9 O -0.516 6.516 10 N -0.685 5.685 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.078 3.922 23 C 0.077 3.923 24 H 0.115 0.885 25 C -0.184 4.184 26 O -0.375 6.375 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.075 0.925 32 H 0.412 0.588 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -8.703 23.760 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.084 0.916 4 C -0.096 4.096 5 N -0.318 5.318 6 C 0.292 3.708 7 O -0.397 6.397 8 C 0.285 3.715 9 O -0.396 6.396 10 N -0.336 5.336 11 C -0.010 4.010 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.045 4.045 23 C 0.018 3.982 24 H 0.132 0.868 25 C -0.242 4.242 26 O -0.294 6.294 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.181 0.819 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.710 -8.749 23.647 25.650 hybrid contribution 1.360 0.320 -0.702 1.563 sum -3.350 -8.429 22.945 24.673 Atomic orbital electron populations 1.21710 0.92044 1.03217 1.02980 1.22556 0.95688 0.95851 0.84733 0.91589 1.23996 0.77998 1.04106 1.03492 1.47936 1.08013 1.60493 1.15358 1.20236 0.86464 0.79504 0.84578 1.90756 1.14431 1.54307 1.80200 1.20020 0.86938 0.79881 0.84638 1.90320 1.14199 1.57710 1.77337 1.46120 1.11036 1.57324 1.19119 1.21901 0.98177 0.97889 0.83013 1.21938 0.96156 1.00327 0.97705 1.19020 0.96459 0.95817 0.89929 1.21161 0.92918 1.39112 1.03086 0.92622 1.25021 0.95531 0.95895 0.97933 1.69945 1.17633 1.43644 1.22079 0.86631 0.82247 0.79044 0.79927 1.20208 1.21251 1.20212 1.22546 1.01057 0.97774 0.83121 1.22625 0.81404 0.96075 0.98050 0.86764 1.22382 1.02128 0.96773 1.02872 1.88005 1.20258 1.77221 1.43911 0.91624 0.91582 0.90353 0.81855 0.90698 0.75169 0.90901 0.90878 0.92375 0.92414 0.96185 0.96194 0.92822 0.90158 0.87857 0.91448 0.91146 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.57 37.16 0.36 -0.73 16 2 C 0.07 0.65 3.01 -26.58 -0.08 0.57 16 3 H 0.07 0.64 6.25 -51.93 -0.32 0.31 16 4 C 0.03 0.26 5.67 -3.53 -0.02 0.24 16 5 N -0.58 -6.59 2.53 -172.53 -0.44 -7.02 16 6 C 0.51 6.80 7.77 -11.59 -0.09 6.71 16 7 O -0.52 -7.76 15.97 5.49 0.09 -7.68 16 8 C 0.50 7.21 7.81 -11.59 -0.09 7.12 16 9 O -0.52 -7.93 13.04 5.50 0.07 -7.85 16 10 N -0.69 -9.81 5.55 -60.73 -0.34 -10.14 16 11 C 0.11 1.83 5.67 -4.05 -0.02 1.80 16 12 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 13 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.08 0.71 6.05 -3.31 -0.02 0.69 16 23 C 0.08 0.62 3.93 -26.36 -0.10 0.52 16 24 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 25 C -0.18 -1.49 8.82 37.16 0.33 -1.17 16 26 O -0.37 -3.67 10.22 -35.23 -0.36 -4.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.17 1.97 3.96 -56.37 -0.22 1.75 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.41 5.43 7.96 -40.82 -0.32 5.11 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.97 7.09 -51.93 -0.37 0.60 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.59 6.11 -51.93 -0.32 0.28 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -30.93 355.98 -7.35 -38.28 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.02 Total: 1.87 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -0.43 Total: 0.60 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.04 Total: -42.82 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.20 Total: -19.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.93 -7.35 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.339 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds