Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50973 * 2 1 4 4 C 1.53298 * 109.55400 * 239.87090 * 2 1 3 5 5 N 1.47165 * 108.41076 * 187.77264 * 4 2 1 6 6 C 1.34785 * 120.98730 * 230.53285 * 5 4 2 7 7 O 1.21349 * 119.99636 * 172.07818 * 6 5 4 8 8 C 1.49450 * 120.00047 * 352.07851 * 6 5 4 9 9 O 1.21344 * 120.00183 * 353.32312 * 8 6 5 10 10 N 1.34779 * 120.00033 * 173.32359 * 8 6 5 11 11 C 1.46497 * 120.00034 * 180.02562 * 10 8 6 12 12 C 1.53007 * 109.46839 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46789 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46964 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99924 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00042 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00121 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46973 * 59.99806 * 18 16 14 20 20 H 1.48497 * 109.47423 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46768 * 300.00357 * 18 16 14 22 22 C 1.47147 * 118.03297 * 50.46645 * 5 4 2 23 23 C 1.53290 * 108.41493 * 309.53588 * 22 5 4 24 24 H 1.09003 * 109.51327 * 292.35055 * 23 22 5 25 25 C 1.53007 * 109.51326 * 172.25364 * 23 22 5 26 26 O 1.42958 * 109.22908 * 52.27796 * 23 22 5 27 27 H 1.08994 * 109.47117 * 299.90249 * 1 2 3 28 28 H 1.09004 * 109.46946 * 59.90174 * 1 2 3 29 29 H 1.09001 * 109.47154 * 179.89715 * 1 2 3 30 30 H 1.09000 * 109.68323 * 307.47396 * 4 2 1 31 31 H 1.09001 * 109.67962 * 67.99051 * 4 2 1 32 32 H 0.96999 * 119.99869 * 0.02562 * 10 8 6 33 33 H 1.08997 * 109.46809 * 299.99775 * 11 10 8 34 34 H 1.08998 * 109.47039 * 60.00298 * 11 10 8 35 35 H 1.09001 * 109.46597 * 299.99609 * 12 11 10 36 36 H 1.08996 * 109.46936 * 59.99767 * 12 11 10 37 37 H 1.09004 * 109.46787 * 299.99836 * 13 12 11 38 38 H 1.09002 * 109.47299 * 59.99504 * 13 12 11 39 39 H 0.97003 * 120.00067 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.68934 * 189.78462 * 22 5 4 41 41 H 1.09007 * 109.67738 * 69.27047 * 22 5 4 42 42 H 1.08998 * 109.46812 * 59.99736 * 25 23 22 43 43 H 1.09000 * 109.47288 * 179.97438 * 25 23 22 44 44 H 1.08996 * 109.47028 * 299.99563 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7251 -1.2494 5 7 3.5024 -0.8758 -1.1329 6 6 4.3208 -0.5033 -2.1370 7 8 5.5228 -0.4999 -1.9703 8 6 3.7480 -0.0946 -3.4554 9 8 2.5582 -0.2127 -3.6629 10 7 4.5528 0.4053 -4.4140 11 6 3.9912 0.8065 -5.7062 12 6 5.1098 1.3353 -6.6063 13 6 4.5231 1.7549 -7.9556 14 6 5.6247 2.2763 -8.8420 15 1 6.6416 2.3051 -8.4793 16 6 5.3345 2.7157 -10.1163 17 7 4.0963 2.6801 -10.5580 18 14 6.7001 3.3613 -11.2153 19 1 7.7124 2.2953 -11.4251 20 1 6.1308 3.7687 -12.5249 21 1 7.3428 4.5338 -10.5691 22 6 4.0417 -1.4439 0.1127 23 6 3.4312 -0.6839 1.2957 24 1 3.8021 0.3411 1.3005 25 6 3.8221 -1.3749 2.6037 26 8 2.0075 -0.6758 1.1658 27 1 -0.3633 0.5123 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0277 -0.0018 30 1 1.5776 -1.7081 -1.3205 31 1 1.8035 -0.1404 -2.1375 32 1 5.5039 0.4994 -4.2483 33 1 3.5200 -0.0543 -6.1805 34 1 3.2479 1.5887 -5.5522 35 1 5.5814 2.1960 -6.1321 36 1 5.8528 0.5528 -6.7602 37 1 4.0512 0.8945 -8.4300 38 1 3.7803 2.5375 -7.8013 39 1 3.8921 2.9896 -11.4544 40 1 5.1261 -1.3350 0.1267 41 1 3.7779 -2.4995 0.1791 42 1 4.9078 -1.3838 2.6994 43 1 3.3880 -0.8337 3.4444 44 1 3.4493 -2.3991 2.5990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343140756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -139.009978 kcal Electronic energy + Delta-G solvation = -24190.528514 eV Core-core repulsion = 20528.151188 eV Total energy + Delta-G solvation = -3662.377327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.19729 -40.46838 -39.39662 -37.33376 -36.00678 -35.15090 -34.84067 -33.06964 -31.36371 -29.19326 -28.23260 -27.56463 -25.63742 -23.86683 -23.02595 -22.39994 -22.03558 -20.95318 -18.96722 -18.53797 -18.24471 -17.71538 -17.43548 -17.03926 -16.61640 -16.48458 -16.26456 -16.12302 -15.23537 -15.19891 -15.15242 -14.48379 -14.28184 -14.11741 -13.78989 -13.59318 -13.49717 -13.21533 -13.09304 -12.87498 -12.73887 -12.66845 -12.57396 -12.46100 -12.40119 -12.05332 -11.82901 -11.69916 -11.52333 -11.25566 -11.21156 -10.54353 -10.50290 -10.27129 -9.79384 -8.19549 -6.30382 0.17281 1.08841 1.42098 1.44414 1.52317 1.94600 2.24383 2.42467 2.59658 3.14335 3.14935 3.52842 3.79474 3.91235 3.99189 4.00497 4.06613 4.17511 4.32309 4.36652 4.41769 4.51740 4.61165 4.71436 4.72769 4.88377 4.90923 4.93286 4.96753 5.00348 5.02873 5.14555 5.24604 5.28091 5.30246 5.51296 5.70610 5.76642 5.84293 6.06846 6.13589 6.23404 6.52307 6.79596 6.86394 7.38912 8.92037 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.002405 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.394679 B =11640.161534 C =12259.405789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.058 0.942 4 C 0.047 3.953 5 N -0.586 5.586 6 C 0.513 3.487 7 O -0.538 6.538 8 C 0.503 3.497 9 O -0.531 6.531 10 N -0.683 5.683 11 C 0.127 3.873 12 C -0.106 4.106 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.076 3.924 23 C 0.075 3.925 24 H 0.059 0.941 25 C -0.138 4.138 26 O -0.384 6.384 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -7.844 26.625 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.076 0.924 4 C -0.074 4.074 5 N -0.319 5.319 6 C 0.295 3.705 7 O -0.416 6.416 8 C 0.284 3.716 9 O -0.410 6.410 10 N -0.334 5.334 11 C 0.005 3.995 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.046 4.046 23 C 0.016 3.984 24 H 0.077 0.923 25 C -0.195 4.195 26 O -0.304 6.304 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.256 0.744 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.726 -7.976 26.535 27.957 hybrid contribution 0.967 0.484 -1.144 1.574 sum -2.759 -7.492 25.391 26.617 Atomic orbital electron populations 1.21714 0.90406 1.03762 1.03703 1.22594 0.97008 0.94830 0.83955 0.92352 1.23543 0.77571 1.04067 1.02223 1.48106 1.08325 1.60050 1.15423 1.20056 0.86408 0.78718 0.85297 1.90742 1.14886 1.53538 1.82386 1.20194 0.86598 0.79039 0.85749 1.90532 1.15373 1.54875 1.80259 1.45925 1.12864 1.60749 1.13898 1.21516 0.97015 0.99788 0.81228 1.21645 0.96877 1.00628 0.95286 1.18924 0.95523 0.95069 0.91699 1.21647 0.95224 1.41981 0.99268 0.91836 1.25972 0.97965 0.96132 0.99837 1.70085 1.20283 1.48383 1.18512 0.85512 0.78995 0.79056 0.77551 1.19208 1.21073 1.19162 1.22693 1.01114 0.98754 0.81995 1.22558 0.81054 0.99167 0.95573 0.92289 1.21732 1.02727 1.01237 0.93795 1.87962 1.21231 1.77522 1.43695 0.90769 0.89707 0.91210 0.89843 0.84840 0.74380 0.91576 0.91280 0.91446 0.91581 0.98530 0.98412 0.92776 0.87870 0.88930 0.89126 0.90927 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.57 71.98 0.69 -1.16 16 2 C 0.07 1.29 3.40 30.69 0.10 1.40 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.05 0.96 5.42 86.35 0.47 1.43 16 5 N -0.59 -12.96 3.02 -818.89 -2.47 -15.44 16 6 C 0.51 13.56 7.75 87.27 0.68 14.24 16 7 O -0.54 -15.79 15.97 -3.24 -0.05 -15.84 16 8 C 0.50 14.39 7.74 87.27 0.68 15.06 16 9 O -0.53 -16.55 13.21 -3.23 -0.04 -16.59 16 10 N -0.68 -19.36 5.55 -464.41 -2.58 -21.93 16 11 C 0.13 4.17 5.67 86.38 0.49 4.66 16 12 C -0.11 -4.00 5.27 30.60 0.16 -3.84 16 13 C 0.03 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 17 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 18 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 C 0.08 1.32 5.94 86.35 0.51 1.83 16 23 C 0.07 1.15 3.40 30.69 0.10 1.25 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 C -0.14 -1.37 9.57 71.98 0.69 -0.68 16 26 O -0.38 -6.97 10.03 -148.98 -1.49 -8.47 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.13 3.14 4.50 -33.87 -0.15 2.98 16 32 H 0.42 10.75 7.96 -92.71 -0.74 10.01 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.10 1.83 7.06 -2.39 -0.02 1.81 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -66.22 361.05 1.20 -65.03 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.11 Total: 17.15 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.42 Total: 6.28 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.77 Total: -93.13 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.59 Total: -40.90 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.22 1.20 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.983 kcal (2) G-P(sol) polarization free energy of solvation -66.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds