Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.78363 * 2 1 4 4 C 1.55165 * 110.71664 * 236.75816 * 2 1 3 5 5 C 1.55128 * 101.48395 * 205.96908 * 4 2 1 6 6 N 1.47427 * 104.72087 * 37.29850 * 5 4 2 7 7 C 1.34777 * 125.64525 * 155.81097 * 6 5 4 8 8 O 1.21343 * 120.00084 * 179.69081 * 7 6 5 9 9 C 1.49454 * 120.00164 * 359.69749 * 7 6 5 10 10 O 1.21353 * 119.99759 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00135 * 180.27489 * 9 7 6 12 12 C 1.46500 * 120.00432 * 179.72278 * 11 9 7 13 13 C 1.52991 * 109.47288 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47258 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47437 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99569 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00010 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46971 * 59.99162 * 19 17 15 21 21 H 1.48496 * 109.47265 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46869 * 300.00108 * 19 17 15 23 23 C 1.47021 * 108.70501 * 335.55181 * 6 5 4 24 24 H 1.08997 * 109.88191 * 120.70403 * 23 6 5 25 25 C 1.52999 * 109.87918 * 241.71483 * 23 6 5 26 26 O 1.42894 * 109.47415 * 293.54516 * 25 23 6 27 27 H 1.08995 * 109.46428 * 296.76461 * 1 2 3 28 28 H 1.08996 * 109.46821 * 56.75823 * 1 2 3 29 29 H 1.08994 * 109.47357 * 176.75791 * 1 2 3 30 30 H 1.08999 * 111.00403 * 324.21269 * 4 2 1 31 31 H 1.09005 * 110.99669 * 88.06509 * 4 2 1 32 32 H 1.08997 * 110.50187 * 278.45622 * 5 4 2 33 33 H 1.09004 * 110.33906 * 156.06413 * 5 4 2 34 34 H 0.97001 * 120.00114 * 359.71542 * 11 9 7 35 35 H 1.09000 * 109.46865 * 300.00301 * 12 11 9 36 36 H 1.09001 * 109.46879 * 59.99699 * 12 11 9 37 37 H 1.09003 * 109.47249 * 299.99458 * 13 12 11 38 38 H 1.08993 * 109.47327 * 59.99886 * 13 12 11 39 39 H 1.09000 * 109.46830 * 300.00548 * 14 13 12 40 40 H 1.09001 * 109.46945 * 59.99964 * 14 13 12 41 41 H 0.96998 * 120.00722 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47221 * 53.54968 * 25 23 6 43 43 H 1.08996 * 109.47071 * 173.54183 * 25 23 6 44 44 H 0.96696 * 114.00498 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0789 -0.7956 -1.2138 5 6 3.4665 -1.2457 -0.6862 6 7 3.2444 -1.5508 0.7390 7 6 3.9922 -2.3838 1.4897 8 8 3.7193 -2.5563 2.6593 9 6 5.1576 -3.0948 0.8815 10 8 5.4304 -2.9225 -0.2883 11 7 5.9020 -3.9320 1.6308 12 6 7.0408 -4.6336 1.0332 13 6 7.7101 -5.5131 2.0910 14 6 8.8998 -6.2455 1.4670 15 6 9.5588 -7.1123 2.5089 16 1 9.1684 -7.1379 3.5155 17 6 10.6607 -7.8717 2.1772 18 7 11.1364 -7.8401 0.9515 19 14 11.4780 -8.9457 3.4687 20 1 10.4985 -9.9383 3.9791 21 1 12.6326 -9.6565 2.8630 22 1 11.9522 -8.0963 4.5908 23 6 2.0760 -0.7912 1.2072 24 1 1.3129 -1.4759 1.5775 25 6 2.4938 0.1728 2.3194 26 8 2.9022 -0.5730 3.4678 27 1 -0.3632 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3634 -1.0259 -0.0581 30 1 1.4451 -1.6536 -1.4375 31 1 2.1849 -0.1518 -2.0871 32 1 4.1947 -0.4417 -0.7929 33 1 3.8030 -2.1363 -1.2169 34 1 5.6839 -4.0699 2.5658 35 1 6.6920 -5.2568 0.2097 36 1 7.7601 -3.9055 0.6584 37 1 8.0590 -4.8896 2.9142 38 1 6.9910 -6.2412 2.4662 39 1 8.5514 -6.8689 0.6436 40 1 9.6189 -5.5171 1.0922 41 1 11.9114 -8.3746 0.7180 42 1 3.3230 0.7897 1.9730 43 1 1.6507 0.8117 2.5821 44 1 3.1808 -0.0249 4.2141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343159673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = -128.405428 kcal Electronic energy + Delta-G solvation = -24302.400019 eV Core-core repulsion = 20640.482540 eV Total energy + Delta-G solvation = -3661.917479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84654 -39.20503 -37.63163 -36.44798 -35.56693 -33.48127 -33.01186 -31.19803 -30.61453 -28.41062 -27.07345 -24.81199 -24.11620 -23.02861 -21.81144 -20.78527 -20.51388 -19.34903 -17.63017 -17.26827 -17.09489 -16.43413 -16.30417 -15.64275 -15.31368 -14.79235 -14.61597 -14.45588 -14.31652 -13.91953 -13.83749 -13.59375 -13.25816 -12.92974 -12.58954 -12.28760 -12.11661 -11.97368 -11.86329 -11.75068 -11.58490 -11.26949 -11.15651 -10.89287 -10.86940 -10.71834 -10.61201 -10.15644 -9.86953 -9.61206 -9.22516 -9.08656 -8.94471 -8.77163 -8.36121 -6.01017 -4.03993 1.63254 2.34844 3.33736 3.38067 3.39242 3.40514 3.57833 3.80205 4.08620 4.34039 4.45246 4.51821 4.65985 4.81290 4.91300 4.94584 5.01011 5.08856 5.13931 5.27914 5.34773 5.47091 5.55917 5.61313 5.64470 5.71769 5.73211 5.73980 5.89983 6.06188 6.11937 6.37402 6.57735 6.76441 6.98262 7.15815 7.46646 7.52139 7.63442 7.75627 7.90619 7.97480 8.19754 8.38954 9.02317 9.60174 11.10249 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.002469 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.583939 B =11339.872094 C =11958.547685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.594 5.594 7 C 0.514 3.486 8 O -0.480 6.480 9 C 0.502 3.498 10 O -0.527 6.527 11 N -0.693 5.693 12 C 0.115 3.885 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.142 3.858 24 H 0.085 0.915 25 C 0.064 3.936 26 O -0.538 6.538 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.951 19.557 -2.294 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.026 4.026 6 N -0.331 5.331 7 C 0.297 3.703 8 O -0.352 6.352 9 C 0.282 3.718 10 O -0.404 6.404 11 N -0.344 5.344 12 C -0.007 4.007 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.038 3.962 24 H 0.103 0.897 25 C -0.015 4.015 26 O -0.342 6.342 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -21.827 18.907 -2.929 29.026 hybrid contribution 0.623 -0.085 1.397 1.532 sum -21.205 18.822 -1.533 28.395 Atomic orbital electron populations 1.21775 0.93347 1.02576 1.02281 1.22208 0.96581 0.99394 0.93592 0.89388 1.23003 0.96210 1.00361 0.97359 1.22691 0.96583 1.02837 0.80525 1.48228 1.29409 1.43532 1.11896 1.19944 0.83774 0.80428 0.86203 1.90833 1.68970 1.60664 1.14748 1.20091 0.83943 0.81026 0.86703 1.90687 1.70071 1.63739 1.15940 1.46054 1.30233 1.43149 1.15007 1.21807 0.85990 0.95283 0.97618 1.21921 0.99469 0.97627 0.97036 1.19026 0.91099 0.94908 0.96242 1.21169 1.12697 1.25575 0.96656 0.92624 1.25024 0.97070 0.96982 0.95381 1.69950 1.24316 1.40982 1.18112 0.86630 0.78915 0.80613 0.81673 1.20223 1.21289 1.20226 1.21741 0.88035 0.93059 0.93337 0.89704 1.22548 0.98120 0.93421 0.87437 1.86938 1.87823 1.35338 1.24062 0.92239 0.91742 0.92071 0.90233 0.89488 0.91184 0.87822 0.75367 0.91211 0.91236 0.92470 0.92452 0.96222 0.96230 0.92873 0.93799 0.93071 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.14 37.16 0.34 -0.34 16 2 C -0.10 -0.61 3.07 -88.78 -0.27 -0.88 16 3 H 0.09 0.46 7.86 -51.93 -0.41 0.05 16 4 C -0.13 -0.87 6.54 -24.46 -0.16 -1.03 16 5 C 0.10 0.96 6.08 -2.41 -0.01 0.95 16 6 N -0.59 -7.17 3.06 -163.38 -0.50 -7.67 16 7 C 0.51 7.71 7.65 -11.58 -0.09 7.62 16 8 O -0.48 -8.04 13.74 -18.64 -0.26 -8.30 16 9 C 0.50 8.07 7.86 -11.59 -0.09 7.98 16 10 O -0.53 -9.16 13.77 5.49 0.08 -9.09 16 11 N -0.69 -11.06 5.55 -60.73 -0.34 -11.39 16 12 C 0.12 2.05 5.67 -4.05 -0.02 2.02 16 13 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 C 0.14 1.35 2.89 -66.95 -0.19 1.15 16 24 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 25 C 0.06 0.57 6.48 37.16 0.24 0.81 16 26 O -0.54 -6.22 10.32 -59.37 -0.61 -6.83 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.08 0.53 8.02 -51.93 -0.42 0.11 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.23 6.14 -51.93 -0.32 0.91 16 34 H 0.41 6.10 7.94 -40.82 -0.32 5.78 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.37 2.73 9.12 45.56 0.42 3.15 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -33.93 359.54 -7.94 -41.87 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.49 Total: 2.79 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.95 Total: 2.69 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.10 Total: -45.22 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.79 Total: -24.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.93 -7.94 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343159673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.534 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds