Wall clock time and date at job start Tue Mar 31 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.64116 * 2 1 4 4 C 1.55151 * 110.71927 * 123.14285 * 2 1 3 5 5 C 1.54911 * 101.57994 * 154.04382 * 4 2 1 6 6 N 1.47429 * 104.83285 * 322.98874 * 5 4 2 7 7 C 1.34779 * 125.64913 * 204.09003 * 6 5 4 8 8 O 1.21346 * 119.99870 * 180.02562 * 7 6 5 9 9 C 1.49449 * 119.99730 * 0.03143 * 7 6 5 10 10 O 1.21346 * 120.00400 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99311 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99746 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47368 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47346 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 C 1.47017 * 108.70035 * 24.35747 * 6 5 4 24 24 H 1.09005 * 109.88222 * 239.29600 * 23 6 5 25 25 C 1.52999 * 109.88383 * 118.13024 * 23 6 5 26 26 O 1.42901 * 109.47102 * 66.45147 * 25 23 6 27 27 H 1.09003 * 109.46996 * 298.30988 * 1 2 3 28 28 H 1.08997 * 109.47455 * 58.31312 * 1 2 3 29 29 H 1.09001 * 109.47447 * 178.31061 * 1 2 3 30 30 H 1.08998 * 111.00541 * 35.97317 * 4 2 1 31 31 H 1.08998 * 111.04195 * 272.12821 * 4 2 1 32 32 H 1.09007 * 110.36622 * 204.15202 * 5 4 2 33 33 H 1.08998 * 110.46372 * 81.87832 * 5 4 2 34 34 H 0.97003 * 120.00723 * 359.97438 * 11 9 7 35 35 H 1.09000 * 109.47175 * 59.99850 * 12 11 9 36 36 H 1.09004 * 109.47042 * 299.99808 * 12 11 9 37 37 H 1.09004 * 109.47368 * 59.99943 * 13 12 11 38 38 H 1.09004 * 109.47108 * 300.00044 * 13 12 11 39 39 H 1.09000 * 109.46986 * 60.00254 * 14 13 12 40 40 H 1.08993 * 109.47662 * 300.00031 * 14 13 12 41 41 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47301 * 186.45448 * 25 23 6 43 43 H 1.09001 * 109.47368 * 306.45163 * 25 23 6 44 44 H 0.96703 * 113.99847 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4652 -1.2446 0.6913 6 7 3.2494 -1.5470 -0.7355 7 6 4.0005 -2.3784 -1.4846 8 8 3.7295 -2.5526 -2.6545 9 6 5.1668 -3.0859 -0.8742 10 8 5.4380 -2.9115 0.2956 11 7 5.9175 -3.9177 -1.6233 12 6 7.0612 -4.6109 -1.0252 13 6 7.7366 -5.4866 -2.0824 14 6 8.9315 -6.2101 -1.4580 15 6 9.5963 -7.0732 -2.4993 16 1 9.2059 -7.1024 -3.5058 17 6 10.7029 -7.8254 -2.1668 18 7 11.2834 -8.5782 -3.0756 19 14 11.3777 -7.7754 -0.4256 20 1 12.3891 -6.6935 -0.3176 21 1 10.2692 -7.5138 0.5274 22 1 12.0110 -9.0791 -0.1025 23 6 2.0831 -0.7863 -1.2074 24 1 1.3216 -1.4701 -1.5824 25 6 2.5065 0.1827 -2.3131 26 8 2.9222 -0.5581 -3.4622 27 1 -0.3633 0.4874 0.9048 28 1 -0.3634 0.5398 -0.8744 29 1 -0.3634 -1.0272 -0.0303 30 1 1.4469 -1.6529 1.4382 31 1 2.1820 -0.1496 2.0886 32 1 3.7993 -2.1364 1.2217 33 1 4.1944 -0.4423 0.8030 34 1 5.7006 -4.0575 -2.5583 35 1 6.7169 -5.2365 -0.2017 36 1 7.7752 -3.8774 -0.6504 37 1 8.0810 -4.8614 -2.9062 38 1 7.0225 -6.2201 -2.4569 39 1 8.5875 -6.8353 -0.6340 40 1 9.6455 -5.4765 -1.0839 41 1 12.0622 -9.1072 -2.8418 42 1 1.6644 0.8221 -2.5780 43 1 3.3333 0.7988 -1.9594 44 1 3.2047 -0.0066 -4.2047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343159675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:59 Heat of formation + Delta-G solvation = -124.925038 kcal Electronic energy + Delta-G solvation = -24357.012978 eV Core-core repulsion = 20695.246420 eV Total energy + Delta-G solvation = -3661.766558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89579 -39.26732 -37.68089 -36.47480 -35.68645 -33.50810 -33.02790 -31.44100 -30.65901 -28.48053 -27.48520 -24.88711 -24.14388 -22.93545 -21.78838 -20.82474 -20.45256 -19.39074 -17.70450 -17.30995 -17.14271 -16.67912 -16.46779 -15.72127 -15.44400 -14.84781 -14.69136 -14.45105 -14.18376 -13.94164 -13.84849 -13.62330 -13.32105 -12.98041 -12.71093 -12.61725 -12.16049 -12.05171 -11.99472 -11.93526 -11.64884 -11.30766 -11.18774 -11.08418 -10.92416 -10.89327 -10.18102 -10.12275 -9.92489 -9.75012 -9.27874 -9.21353 -9.02880 -8.82149 -8.55005 -6.05362 -4.04136 1.57448 2.29300 3.31339 3.33538 3.38857 3.42625 3.51735 3.77042 4.04986 4.31102 4.44681 4.46780 4.61411 4.78398 4.88543 4.91936 4.98332 5.05947 5.10576 5.25015 5.28360 5.44574 5.48450 5.52735 5.58993 5.60434 5.67117 5.70280 5.86759 5.96519 6.02086 6.25033 6.42053 6.60631 6.76717 7.10393 7.22226 7.35498 7.39790 7.49914 7.76248 7.84581 8.13219 8.51409 8.98983 9.56507 11.07891 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.002611 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.482488 B =10720.988983 C =11388.554269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.087 0.913 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.594 5.594 7 C 0.514 3.486 8 O -0.479 6.479 9 C 0.503 3.497 10 O -0.527 6.527 11 N -0.693 5.693 12 C 0.113 3.887 13 C -0.115 4.115 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.288 1.288 23 C 0.142 3.858 24 H 0.085 0.915 25 C 0.064 3.936 26 O -0.539 6.539 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.549 21.416 7.148 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.026 4.026 6 N -0.331 5.331 7 C 0.296 3.704 8 O -0.351 6.351 9 C 0.284 3.716 10 O -0.405 6.405 11 N -0.345 5.345 12 C -0.009 4.009 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.189 1.189 22 H -0.214 1.214 23 C 0.038 3.962 24 H 0.103 0.897 25 C -0.015 4.015 26 O -0.342 6.342 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.423 20.712 7.633 31.465 hybrid contribution 0.592 0.461 0.076 0.754 sum -21.832 21.173 7.709 31.374 Atomic orbital electron populations 1.21772 0.93305 1.02571 1.02322 1.22202 0.96590 0.99428 0.93550 0.89432 1.22952 0.96193 1.00404 0.97383 1.22636 0.96642 1.02811 0.80513 1.48223 1.29497 1.43597 1.11734 1.19905 0.83761 0.80462 0.86228 1.90842 1.69026 1.60493 1.14712 1.20097 0.83960 0.80914 0.86667 1.90683 1.70304 1.63539 1.15970 1.46004 1.29690 1.43657 1.15104 1.21811 0.86074 0.95469 0.97582 1.21738 0.98742 0.97780 0.97042 1.19503 0.92798 0.95475 0.97043 1.21099 1.12258 1.25016 0.97628 0.90931 1.25036 0.96445 0.94879 0.97172 1.69917 1.21762 1.28685 1.33773 0.86767 0.79530 0.77406 0.85536 1.20266 1.18902 1.21378 1.21744 0.88021 0.93040 0.93353 0.89667 1.22549 0.98086 0.93446 0.87432 1.86935 1.87516 1.35388 1.24363 0.91703 0.92227 0.92078 0.90257 0.89462 0.87908 0.91220 0.75186 0.91234 0.91254 0.91854 0.91810 0.96264 0.96704 0.92700 0.93031 0.93798 0.78549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.16 37.16 0.34 -0.30 16 2 C -0.10 -0.58 3.07 -88.78 -0.27 -0.86 16 3 H 0.09 0.43 7.84 -51.93 -0.41 0.02 16 4 C -0.13 -0.83 6.53 -24.58 -0.16 -0.99 16 5 C 0.10 0.92 6.06 -2.53 -0.02 0.91 16 6 N -0.59 -6.94 3.06 -163.51 -0.50 -7.44 16 7 C 0.51 7.48 7.65 -11.58 -0.09 7.39 16 8 O -0.48 -7.86 13.77 -18.60 -0.26 -8.12 16 9 C 0.50 7.76 7.86 -11.59 -0.09 7.67 16 10 O -0.53 -8.76 13.78 5.50 0.08 -8.69 16 11 N -0.69 -10.55 5.55 -60.73 -0.34 -10.89 16 12 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 13 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.14 1.31 2.90 -66.95 -0.19 1.11 16 24 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 25 C 0.06 0.55 6.47 37.16 0.24 0.79 16 26 O -0.54 -6.10 10.34 -59.33 -0.61 -6.72 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 30 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 1.16 6.16 -51.93 -0.32 0.84 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.41 5.89 7.94 -40.82 -0.32 5.57 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.37 2.67 9.12 45.56 0.42 3.08 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -34.46 356.00 -7.57 -42.03 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.46 Total: 2.90 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.95 Total: 1.60 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.06 Total: -45.44 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.79 Total: -23.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.46 -7.57 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343159675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.892 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds