Wall clock time and date at job start Tue Mar 31 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.30507 * 2 1 4 4 C 1.54389 * 110.43117 * 237.77036 * 2 1 3 5 5 N 1.48154 * 104.61471 * 264.94833 * 4 2 1 6 6 C 1.34775 * 127.83581 * 140.43465 * 5 4 2 7 7 O 1.21358 * 119.99388 * 180.02562 * 6 5 4 8 8 C 1.49440 * 120.00241 * 0.02562 * 6 5 4 9 9 O 1.21348 * 120.00289 * 359.97438 * 8 6 5 10 10 N 1.34779 * 119.99844 * 180.02562 * 8 6 5 11 11 C 1.46504 * 120.00129 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47236 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46767 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.46636 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99873 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99625 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00228 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00110 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46880 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47433 * 119.99829 * 18 16 14 21 21 H 1.48498 * 109.47516 * 240.00262 * 18 16 14 22 22 C 1.48144 * 104.32110 * 320.41346 * 5 4 2 23 23 C 1.54281 * 110.34704 * 122.17650 * 2 1 3 24 24 H 1.09002 * 110.34302 * 237.84737 * 23 2 1 25 25 C 1.53006 * 110.33853 * 359.97438 * 23 2 1 26 26 O 1.42907 * 109.46576 * 183.52394 * 25 23 2 27 27 H 1.09004 * 109.46885 * 297.82102 * 1 2 3 28 28 H 1.09004 * 109.47333 * 57.82297 * 1 2 3 29 29 H 1.09001 * 109.46905 * 177.82599 * 1 2 3 30 30 H 1.09000 * 110.41208 * 23.72685 * 4 2 1 31 31 H 1.09000 * 110.41204 * 146.16777 * 4 2 1 32 32 H 0.96996 * 120.00298 * 359.97438 * 10 8 6 33 33 H 1.09002 * 109.46794 * 299.99746 * 11 10 8 34 34 H 1.09001 * 109.46963 * 59.99616 * 11 10 8 35 35 H 1.09002 * 109.46943 * 299.99558 * 12 11 10 36 36 H 1.09001 * 109.47536 * 59.99870 * 12 11 10 37 37 H 1.09002 * 109.47171 * 299.99594 * 13 12 11 38 38 H 1.08998 * 109.47528 * 59.99933 * 13 12 11 39 39 H 0.97004 * 120.00282 * 179.97438 * 17 16 14 40 40 H 1.08999 * 110.40697 * 280.80114 * 22 5 4 41 41 H 1.08998 * 110.40769 * 158.37404 * 22 5 4 42 42 H 1.09003 * 109.46961 * 303.52247 * 25 23 2 43 43 H 1.09002 * 109.47250 * 63.53000 * 25 23 2 44 44 H 0.96706 * 113.99392 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0838 -3.3101 -1.3533 7 8 2.3432 -4.3604 -0.8034 8 6 1.5049 -3.3110 -2.7310 9 8 1.2451 -2.2608 -3.2807 10 7 1.2705 -4.4783 -3.3627 11 6 0.7036 -4.4792 -4.7136 12 6 0.5382 -5.9215 -5.1963 13 6 -0.0545 -5.9224 -6.6069 14 6 -0.2167 -7.3432 -7.0827 15 1 0.0742 -8.1633 -6.4431 16 6 -0.7366 -7.5958 -8.3344 17 7 -1.0913 -6.5971 -9.1130 18 14 -0.9371 -9.3568 -8.9244 19 1 -0.4680 -10.2892 -7.8681 20 1 -2.3688 -9.6209 -9.2169 21 1 -0.1344 -9.5603 -10.1571 22 6 2.8825 -1.9400 0.6332 23 6 2.0664 -0.7703 1.2244 24 1 2.7082 -0.1264 1.8258 25 6 0.9062 -1.3010 2.0690 26 8 1.4218 -1.9393 3.2390 27 1 -0.3633 0.4796 0.9089 28 1 -0.3634 0.5473 -0.8698 29 1 -0.3633 -1.0269 -0.0390 30 1 1.3253 -0.7880 -2.0206 31 1 2.9968 -0.3225 -1.5780 32 1 1.4779 -5.3177 -2.9233 33 1 -0.2691 -3.9873 -4.6997 34 1 1.3718 -3.9441 -5.3884 35 1 1.5107 -6.4138 -5.2101 36 1 -0.1302 -6.4563 -4.5215 37 1 -1.0270 -5.4303 -6.5927 38 1 0.6135 -5.3876 -7.2821 39 1 -1.4567 -6.7748 -9.9938 40 1 3.9374 -1.6733 0.5691 41 1 2.7526 -2.8377 1.2375 42 1 0.2611 -0.4724 2.3614 43 1 0.3317 -2.0207 1.4858 44 1 0.7404 -2.3001 3.8227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343163944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:32 Heat of formation + Delta-G solvation = -152.433741 kcal Electronic energy + Delta-G solvation = -24156.991813 eV Core-core repulsion = 20494.032388 eV Total energy + Delta-G solvation = -3662.959425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96803 -40.37236 -39.15671 -37.41308 -37.00225 -35.28157 -34.03567 -33.05315 -31.25959 -29.14995 -28.29377 -26.66067 -25.74562 -24.37099 -22.87687 -22.39361 -20.90615 -20.30461 -19.01797 -18.50127 -18.16803 -17.95563 -17.80382 -16.92671 -16.77421 -16.40886 -15.98573 -15.66757 -15.38452 -15.08610 -14.82070 -14.46949 -14.34923 -14.22895 -13.79067 -13.66400 -13.50325 -13.48842 -13.01246 -12.88018 -12.79206 -12.59333 -12.47026 -12.38228 -11.96366 -11.79452 -11.71916 -11.55972 -11.33636 -11.21853 -10.78603 -10.59111 -10.56223 -10.34084 -9.96357 -8.20480 -6.31239 0.25682 1.14142 1.41056 1.41697 1.54641 2.04512 2.37842 2.44158 3.13555 3.17174 3.26959 3.45729 3.60908 3.96588 4.06394 4.16540 4.22894 4.26351 4.35184 4.50659 4.51809 4.53323 4.65662 4.68744 4.73220 4.81500 4.85837 4.90055 4.96868 5.02831 5.12147 5.13702 5.25119 5.27726 5.44665 5.50939 5.69679 5.83609 5.96829 6.18007 6.23129 6.58250 6.85081 6.85562 6.86105 7.38216 8.91659 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.002389 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.437658 B =11718.019873 C =12044.189138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.122 0.878 4 C 0.082 3.918 5 N -0.592 5.592 6 C 0.525 3.475 7 O -0.549 6.549 8 C 0.505 3.495 9 O -0.536 6.536 10 N -0.687 5.687 11 C 0.129 3.871 12 C -0.106 4.106 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.105 3.895 23 C -0.093 4.093 24 H 0.115 0.885 25 C 0.081 3.919 26 O -0.593 6.593 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.066 0.934 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.264 0.736 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 15.713 24.353 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.140 0.860 4 C -0.039 4.039 5 N -0.325 5.325 6 C 0.308 3.692 7 O -0.428 6.428 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.339 5.339 11 C 0.006 3.994 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.016 4.016 23 C -0.112 4.112 24 H 0.133 0.867 25 C 0.004 3.996 26 O -0.401 6.401 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.057 16.012 23.760 29.285 hybrid contribution -0.714 -1.499 -0.443 1.718 sum 5.342 14.513 23.317 27.980 Atomic orbital electron populations 1.21964 0.94293 1.01353 1.03210 1.22162 0.96672 1.00407 0.91697 0.86004 1.23196 1.03161 0.79152 0.98417 1.48849 1.59731 1.05956 1.17992 1.19679 0.79706 0.83359 0.86406 1.90755 1.53135 1.31269 1.67627 1.20159 0.79807 0.84631 0.86804 1.90653 1.52222 1.31094 1.67381 1.45907 1.61750 1.08833 1.17445 1.21483 0.98364 0.98700 0.80820 1.21646 1.01430 0.93625 0.97726 1.18931 0.94795 0.95927 0.91558 1.21702 1.41637 0.93655 1.00950 0.91876 1.25971 0.95124 1.01699 0.97118 1.70100 1.44080 1.33085 1.10071 0.85397 0.77814 0.79492 0.78331 1.18534 1.20477 1.20490 1.22653 0.98359 0.99586 0.80997 1.22168 0.97113 0.96045 0.95910 0.86667 1.22386 0.95189 0.96118 0.85916 1.86398 1.39615 1.78095 1.36034 0.90151 0.91892 0.94330 0.88268 0.89094 0.74528 0.91588 0.91604 0.91569 0.91555 0.98439 0.98474 0.92758 0.88845 0.90892 0.90808 0.95094 0.75418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.93 71.98 0.57 -1.20 16 2 C -0.09 -0.99 3.65 -9.89 -0.04 -1.03 16 3 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 4 C 0.08 1.42 6.16 86.53 0.53 1.95 16 5 N -0.59 -13.14 3.32 -809.52 -2.68 -15.82 16 6 C 0.53 14.96 7.98 87.27 0.70 15.65 16 7 O -0.55 -17.95 16.74 -3.27 -0.05 -18.01 16 8 C 0.51 15.39 7.87 87.27 0.69 16.08 16 9 O -0.54 -17.62 13.77 -3.24 -0.04 -17.67 16 10 N -0.69 -20.81 5.55 -464.41 -2.58 -23.39 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 C -0.11 -4.13 5.27 30.59 0.16 -3.96 16 13 C 0.03 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 18 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.11 1.86 6.54 86.53 0.57 2.43 16 23 C -0.09 -1.13 3.33 -9.89 -0.03 -1.16 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 C 0.08 1.03 5.19 71.98 0.37 1.40 16 26 O -0.59 -8.39 13.25 -148.98 -1.97 -10.37 16 27 H 0.08 0.63 6.71 -2.38 -0.02 0.61 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.61 6.90 -2.39 -0.02 0.60 16 30 H 0.10 2.18 5.21 -2.39 -0.01 2.17 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.42 11.63 7.94 -92.71 -0.74 10.89 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.62 7.31 -2.39 -0.02 1.60 16 42 H 0.07 0.63 6.58 -2.39 -0.02 0.61 16 43 H 0.03 0.50 7.01 -2.39 -0.02 0.49 16 44 H 0.40 2.51 9.12 -74.05 -0.68 1.84 16 Total: -1.00 -71.51 358.30 -0.57 -72.07 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.39 Total: 16.46 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.85 Total: 6.90 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.98 Total: -95.40 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.07 Total: -46.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.51 -0.57 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343163944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.362 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds