Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.79941 * 2 1 4 4 C 1.54936 * 110.74324 * 123.29058 * 2 1 3 5 5 N 1.48117 * 103.26066 * 155.71620 * 4 2 1 6 6 C 1.34768 * 127.03639 * 140.67188 * 5 4 2 7 7 O 1.21354 * 119.99658 * 180.02562 * 6 5 4 8 8 C 1.49442 * 120.00351 * 0.04632 * 6 5 4 9 9 O 1.21354 * 119.99991 * 0.02562 * 8 6 5 10 10 N 1.34779 * 120.00360 * 179.97438 * 8 6 5 11 11 C 1.46503 * 119.99966 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47181 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47129 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46927 * 180.02562 * 13 12 11 15 15 H 1.08009 * 120.00337 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00313 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00246 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99545 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47271 * 90.00112 * 18 16 14 20 20 H 1.48510 * 109.46884 * 209.99797 * 18 16 14 21 21 H 1.48503 * 109.47163 * 329.99733 * 18 16 14 22 22 C 1.47490 * 105.92696 * 320.71185 * 5 4 2 23 23 C 1.54002 * 107.08953 * 25.44465 * 22 5 4 24 24 H 1.08993 * 110.33028 * 239.70395 * 23 22 5 25 25 C 1.52999 * 110.32877 * 117.58125 * 23 22 5 26 26 O 1.42905 * 109.46728 * 66.45989 * 25 23 22 27 27 H 1.09003 * 109.47143 * 183.28776 * 1 2 3 28 28 H 1.08993 * 109.47333 * 303.28439 * 1 2 3 29 29 H 1.08998 * 109.47228 * 63.29048 * 1 2 3 30 30 H 1.09006 * 110.65849 * 37.27645 * 4 2 1 31 31 H 1.08997 * 110.80710 * 274.22441 * 4 2 1 32 32 H 0.96993 * 119.99915 * 0.02562 * 10 8 6 33 33 H 1.08995 * 109.47570 * 300.00651 * 11 10 8 34 34 H 1.09000 * 109.46887 * 60.00194 * 11 10 8 35 35 H 1.09001 * 109.47163 * 300.01084 * 12 11 10 36 36 H 1.09005 * 109.46494 * 60.00345 * 12 11 10 37 37 H 1.09002 * 109.47184 * 300.00121 * 13 12 11 38 38 H 1.08993 * 109.46872 * 60.00608 * 13 12 11 39 39 H 0.97009 * 119.99684 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.91440 * 266.07958 * 22 5 4 41 41 H 1.09003 * 109.91082 * 144.80886 * 22 5 4 42 42 H 1.09000 * 109.47486 * 306.45927 * 25 23 22 43 43 H 1.09001 * 109.47362 * 186.45204 * 25 23 22 44 44 H 0.96696 * 114.00036 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 1.2111 5 7 3.4280 -1.2098 0.7622 6 6 4.5538 -1.2470 1.5021 7 8 5.5976 -1.6099 1.0007 8 6 4.5168 -0.8417 2.9401 9 8 3.4728 -0.4797 3.4417 10 7 5.6426 -0.8794 3.6801 11 6 5.6063 -0.4816 5.0896 12 6 7.0057 -0.6152 5.6935 13 6 6.9677 -0.2003 7.1656 14 6 8.3462 -0.3313 7.7602 15 1 9.1675 -0.6756 7.1490 16 6 8.5591 -0.0117 9.0843 17 7 9.7621 -0.1264 9.6033 18 14 7.1386 0.5831 10.1416 19 1 6.4799 -0.5813 10.7863 20 1 7.6518 1.5034 11.1880 21 1 6.1548 1.3001 9.2911 22 6 3.2875 -1.5727 -0.6604 23 6 2.0775 -0.7936 -1.2088 24 1 1.3218 -1.4833 -1.5845 25 6 2.5199 0.1641 -2.3169 26 8 2.9771 -0.5886 -3.4424 27 1 -0.3633 -1.0260 0.0589 28 1 -0.3633 0.5639 0.8590 29 1 -0.3633 0.4619 -0.9180 30 1 1.4559 -1.6669 1.4130 31 1 2.1457 -0.1593 2.0938 32 1 6.4769 -1.1691 3.2793 33 1 5.2751 0.5540 5.1665 34 1 4.9135 -1.1257 5.6312 35 1 7.3374 -1.6506 5.6164 36 1 7.6981 0.0293 5.1517 37 1 6.6359 0.8351 7.2429 38 1 6.2754 -0.8451 7.7070 39 1 9.9117 0.0981 10.5351 40 1 3.1126 -2.6445 -0.7547 41 1 4.1883 -1.2915 -1.2059 42 1 3.3286 0.7960 -1.9497 43 1 1.6777 0.7884 -2.6153 44 1 3.2736 -0.0448 -4.1850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343163947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = -128.528214 kcal Electronic energy + Delta-G solvation = -23895.196177 eV Core-core repulsion = 20233.273373 eV Total energy + Delta-G solvation = -3661.922803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94438 -39.37733 -38.11674 -36.81585 -35.73883 -33.54803 -33.12890 -31.49008 -30.92939 -27.88558 -26.86276 -26.56438 -24.21421 -22.64522 -21.75764 -20.81017 -20.37748 -19.67051 -18.00475 -17.51023 -17.14215 -16.71203 -16.59320 -15.88647 -15.67648 -15.06309 -14.94286 -14.70506 -14.21552 -14.07772 -13.82315 -13.52871 -13.22736 -13.20297 -12.77567 -12.73093 -12.64419 -12.09950 -11.98315 -11.93837 -11.67048 -11.45406 -11.13152 -11.08449 -10.97827 -10.92581 -10.45481 -10.16355 -9.96799 -9.78152 -9.42844 -9.24714 -9.15067 -9.01820 -8.56988 -6.07233 -4.06254 1.36965 2.16511 3.15430 3.29753 3.37312 3.40513 3.40836 3.62683 4.06919 4.07155 4.39532 4.42803 4.53819 4.69360 4.81383 4.92631 4.98857 5.10292 5.17607 5.24953 5.26390 5.42520 5.43164 5.48794 5.53176 5.55490 5.64765 5.68146 5.74016 5.91701 5.96394 6.19368 6.37772 6.55110 6.72949 6.97434 7.13997 7.18745 7.23803 7.32438 7.64984 7.73990 7.98287 8.49142 8.96898 9.54498 11.05965 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002405 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.742227 B =11638.854663 C =12257.331227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.090 3.910 5 N -0.598 5.598 6 C 0.524 3.476 7 O -0.520 6.520 8 C 0.506 3.494 9 O -0.523 6.523 10 N -0.690 5.690 11 C 0.112 3.888 12 C -0.115 4.115 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.113 3.887 23 C -0.099 4.099 24 H 0.096 0.904 25 C 0.084 3.916 26 O -0.573 6.573 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.811 0.731 -24.711 31.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.032 4.032 5 N -0.332 5.332 6 C 0.308 3.692 7 O -0.396 6.396 8 C 0.286 3.714 9 O -0.401 6.401 10 N -0.342 5.342 11 C -0.010 4.010 12 C -0.153 4.153 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.009 4.009 23 C -0.118 4.118 24 H 0.114 0.886 25 C 0.006 3.994 26 O -0.379 6.379 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.923 0.307 -23.971 31.171 hybrid contribution -0.090 0.613 0.090 0.627 sum -20.013 0.921 -23.881 31.171 Atomic orbital electron populations 1.21743 0.93241 1.02535 1.02388 1.22338 0.96588 0.99690 0.93499 0.89588 1.23174 0.81402 0.99859 0.98774 1.48552 1.08747 1.64339 1.11579 1.19940 0.82773 0.79244 0.87278 1.90778 1.29564 1.46390 1.72868 1.19920 0.84838 0.79832 0.86778 1.90640 1.29928 1.46923 1.72606 1.46027 1.11106 1.64615 1.12457 1.21850 1.00520 1.00619 0.78009 1.21746 0.92680 1.02084 0.98838 1.19499 0.98198 0.96393 0.90710 1.21090 0.93804 1.45068 0.96114 0.90934 1.25035 0.95576 0.94977 0.97929 1.69914 1.21051 1.49034 1.14083 0.86770 0.83002 0.79164 0.80307 1.20246 1.21368 1.18914 1.22129 0.99092 0.99404 0.80313 1.22213 0.97538 0.97740 0.94272 0.88612 1.22229 0.97839 0.92975 0.86373 1.86474 1.86289 1.37855 1.27272 0.92066 0.91734 0.92147 0.90502 0.86197 0.75116 0.91097 0.91076 0.91799 0.91786 0.96254 0.96673 0.92677 0.90912 0.89697 0.93314 0.93124 0.77143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.16 37.16 0.34 -0.35 16 2 C -0.10 -0.67 3.21 -88.75 -0.28 -0.96 16 3 H 0.09 0.58 7.86 -51.93 -0.41 0.17 16 4 C 0.09 0.82 6.07 -2.13 -0.01 0.81 16 5 N -0.60 -6.78 3.29 -170.27 -0.56 -7.34 16 6 C 0.52 7.32 7.95 -11.59 -0.09 7.23 16 7 O -0.52 -8.33 16.82 5.49 0.09 -8.24 16 8 C 0.51 7.42 7.87 -11.59 -0.09 7.32 16 9 O -0.52 -8.23 13.69 5.49 0.08 -8.15 16 10 N -0.69 -10.03 5.55 -60.73 -0.34 -10.37 16 11 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 12 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 13 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 14 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 15 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 18 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 22 C 0.11 1.08 6.47 -2.98 -0.02 1.06 16 23 C -0.10 -0.68 2.86 -89.24 -0.26 -0.94 16 24 H 0.10 0.61 7.85 -51.93 -0.41 0.20 16 25 C 0.08 0.51 6.11 37.16 0.23 0.74 16 26 O -0.57 -3.92 13.41 -35.23 -0.47 -4.39 16 27 H 0.06 0.28 8.10 -51.93 -0.42 -0.14 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 31 H 0.12 1.30 5.43 -51.93 -0.28 1.02 16 32 H 0.41 5.60 7.94 -40.82 -0.32 5.27 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.92 7.51 -51.93 -0.39 0.53 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.38 1.00 9.12 45.56 0.42 1.41 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -33.66 360.94 -6.94 -40.60 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.39 Total: 1.64 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.89 Total: 0.88 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.12 Total: -44.62 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.30 Total: -20.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.66 -6.94 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343163947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.925 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds