Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.79941 * 2 1 4 4 C 1.54936 * 110.74324 * 123.29058 * 2 1 3 5 5 N 1.48117 * 103.26066 * 155.71620 * 4 2 1 6 6 C 1.34768 * 127.03639 * 140.67188 * 5 4 2 7 7 O 1.21354 * 119.99658 * 180.02562 * 6 5 4 8 8 C 1.49442 * 120.00351 * 0.04632 * 6 5 4 9 9 O 1.21354 * 119.99991 * 0.02562 * 8 6 5 10 10 N 1.34779 * 120.00360 * 179.97438 * 8 6 5 11 11 C 1.46503 * 119.99966 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47181 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47129 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46927 * 180.02562 * 13 12 11 15 15 H 1.08009 * 120.00337 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00313 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00246 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99545 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47271 * 90.00112 * 18 16 14 20 20 H 1.48510 * 109.46884 * 209.99797 * 18 16 14 21 21 H 1.48503 * 109.47163 * 329.99733 * 18 16 14 22 22 C 1.47490 * 105.92696 * 320.71185 * 5 4 2 23 23 C 1.54002 * 107.08953 * 25.44465 * 22 5 4 24 24 H 1.08993 * 110.33028 * 239.70395 * 23 22 5 25 25 C 1.52999 * 110.32877 * 117.58125 * 23 22 5 26 26 O 1.42905 * 109.46728 * 66.45989 * 25 23 22 27 27 H 1.09003 * 109.47143 * 183.28776 * 1 2 3 28 28 H 1.08993 * 109.47333 * 303.28439 * 1 2 3 29 29 H 1.08998 * 109.47228 * 63.29048 * 1 2 3 30 30 H 1.09006 * 110.65849 * 37.27645 * 4 2 1 31 31 H 1.08997 * 110.80710 * 274.22441 * 4 2 1 32 32 H 0.96993 * 119.99915 * 0.02562 * 10 8 6 33 33 H 1.08995 * 109.47570 * 300.00651 * 11 10 8 34 34 H 1.09000 * 109.46887 * 60.00194 * 11 10 8 35 35 H 1.09001 * 109.47163 * 300.01084 * 12 11 10 36 36 H 1.09005 * 109.46494 * 60.00345 * 12 11 10 37 37 H 1.09002 * 109.47184 * 300.00121 * 13 12 11 38 38 H 1.08993 * 109.46872 * 60.00608 * 13 12 11 39 39 H 0.97009 * 119.99684 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.91440 * 266.07958 * 22 5 4 41 41 H 1.09003 * 109.91082 * 144.80886 * 22 5 4 42 42 H 1.09000 * 109.47486 * 306.45927 * 25 23 22 43 43 H 1.09001 * 109.47362 * 186.45204 * 25 23 22 44 44 H 0.96696 * 114.00036 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 1.2111 5 7 3.4280 -1.2098 0.7622 6 6 4.5538 -1.2470 1.5021 7 8 5.5976 -1.6099 1.0007 8 6 4.5168 -0.8417 2.9401 9 8 3.4728 -0.4797 3.4417 10 7 5.6426 -0.8794 3.6801 11 6 5.6063 -0.4816 5.0896 12 6 7.0057 -0.6152 5.6935 13 6 6.9677 -0.2003 7.1656 14 6 8.3462 -0.3313 7.7602 15 1 9.1675 -0.6756 7.1490 16 6 8.5591 -0.0117 9.0843 17 7 9.7621 -0.1264 9.6033 18 14 7.1386 0.5831 10.1416 19 1 6.4799 -0.5813 10.7863 20 1 7.6518 1.5034 11.1880 21 1 6.1548 1.3001 9.2911 22 6 3.2875 -1.5727 -0.6604 23 6 2.0775 -0.7936 -1.2088 24 1 1.3218 -1.4833 -1.5845 25 6 2.5199 0.1641 -2.3169 26 8 2.9771 -0.5886 -3.4424 27 1 -0.3633 -1.0260 0.0589 28 1 -0.3633 0.5639 0.8590 29 1 -0.3633 0.4619 -0.9180 30 1 1.4559 -1.6669 1.4130 31 1 2.1457 -0.1593 2.0938 32 1 6.4769 -1.1691 3.2793 33 1 5.2751 0.5540 5.1665 34 1 4.9135 -1.1257 5.6312 35 1 7.3374 -1.6506 5.6164 36 1 7.6981 0.0293 5.1517 37 1 6.6359 0.8351 7.2429 38 1 6.2754 -0.8451 7.7070 39 1 9.9117 0.0981 10.5351 40 1 3.1126 -2.6445 -0.7547 41 1 4.1883 -1.2915 -1.2059 42 1 3.3286 0.7960 -1.9497 43 1 1.6777 0.7884 -2.6153 44 1 3.2736 -0.0448 -4.1850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343163947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -154.925547 kcal Electronic energy + Delta-G solvation = -23896.340851 eV Core-core repulsion = 20233.273373 eV Total energy + Delta-G solvation = -3663.067478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95636 -40.28229 -39.13152 -37.46208 -37.04538 -35.23474 -34.04752 -33.29808 -31.53150 -29.42580 -27.85642 -27.19896 -25.51927 -23.80811 -22.63157 -22.30898 -21.14693 -20.77969 -19.12489 -18.70507 -18.22003 -17.99627 -17.52171 -16.97276 -16.71204 -16.28444 -16.04730 -15.75714 -15.46197 -15.11594 -14.88154 -14.77759 -14.36209 -13.91312 -13.88726 -13.81480 -13.63502 -13.39088 -13.35246 -12.78018 -12.71240 -12.55622 -12.41715 -12.09681 -11.89693 -11.78617 -11.67288 -11.61105 -11.54042 -11.33849 -10.91271 -10.75651 -10.59213 -10.33080 -9.97118 -8.28470 -6.33120 0.24622 1.13250 1.38692 1.40212 1.52134 2.03491 2.37552 2.39170 3.07208 3.14474 3.23685 3.45450 3.55757 4.00313 4.04557 4.11071 4.16426 4.29499 4.39642 4.46393 4.49084 4.56537 4.61001 4.65238 4.78721 4.81199 4.83789 4.85590 4.91516 5.01199 5.06758 5.11785 5.22916 5.30249 5.45286 5.46466 5.54817 5.64938 5.95568 6.16343 6.27821 6.56396 6.75222 6.84299 6.88020 7.31579 8.88126 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002405 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.742227 B =11638.854663 C =12257.331227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.086 0.914 4 C 0.085 3.915 5 N -0.593 5.593 6 C 0.522 3.478 7 O -0.550 6.550 8 C 0.508 3.492 9 O -0.533 6.533 10 N -0.689 5.689 11 C 0.126 3.874 12 C -0.105 4.105 13 C -0.010 4.010 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.001 3.999 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.242 1.242 22 C 0.109 3.891 23 C -0.091 4.091 24 H 0.107 0.893 25 C 0.085 3.915 26 O -0.593 6.593 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.417 0.583 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 1.393 -25.703 34.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.036 4.036 5 N -0.326 5.326 6 C 0.305 3.695 7 O -0.428 6.428 8 C 0.289 3.711 9 O -0.411 6.411 10 N -0.340 5.340 11 C 0.003 3.997 12 C -0.143 4.143 13 C -0.048 4.048 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.196 4.196 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.166 1.166 22 C -0.013 4.013 23 C -0.110 4.110 24 H 0.126 0.874 25 C 0.007 3.993 26 O -0.401 6.401 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -23.161 0.977 -25.011 34.102 hybrid contribution 0.958 0.369 0.308 1.071 sum -22.204 1.345 -24.703 33.242 Atomic orbital electron populations 1.21734 0.91470 1.03097 1.03200 1.22287 0.97848 0.99083 0.91850 0.89547 1.23334 0.80410 1.00439 0.99452 1.48699 1.08858 1.62797 1.12243 1.19788 0.83209 0.79485 0.87056 1.90762 1.30668 1.48152 1.73214 1.20036 0.84506 0.79447 0.87102 1.90643 1.30210 1.47362 1.72932 1.45914 1.11521 1.64650 1.11963 1.21563 0.98490 1.00992 0.78637 1.21527 0.94518 1.01838 0.96427 1.19452 0.95114 0.97043 0.93183 1.21477 0.95333 1.44210 0.96098 0.94846 1.26054 0.98558 0.95290 0.99649 1.70076 1.23708 1.50808 1.14696 0.85636 0.79526 0.79000 0.78357 1.19199 1.21216 1.16570 1.22296 0.99798 1.00130 0.79086 1.22215 0.96412 0.97867 0.94551 0.87440 1.22232 0.98396 0.92654 0.86031 1.86425 1.86516 1.39081 1.28109 0.91570 0.91626 0.90736 0.89368 0.87726 0.74608 0.90720 0.90718 0.91948 0.91910 0.95555 0.95707 0.92532 0.90589 0.91248 0.94038 0.90920 0.75188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.16 71.98 0.66 -0.27 16 2 C -0.09 -1.00 3.21 -9.58 -0.03 -1.03 16 3 H 0.09 0.97 7.86 -2.39 -0.02 0.95 16 4 C 0.08 1.43 6.07 86.73 0.53 1.95 16 5 N -0.59 -12.97 3.29 -810.97 -2.67 -15.64 16 6 C 0.52 14.40 7.95 87.27 0.69 15.09 16 7 O -0.55 -17.72 16.82 -3.26 -0.05 -17.77 16 8 C 0.51 14.49 7.87 87.27 0.69 15.18 16 9 O -0.53 -16.12 13.69 -3.26 -0.04 -16.17 16 10 N -0.69 -19.40 5.55 -464.41 -2.58 -21.98 16 11 C 0.13 3.81 5.67 86.38 0.49 4.30 16 12 C -0.11 -3.81 5.27 30.59 0.16 -3.65 16 13 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 14 C -0.53 -30.34 9.66 25.60 0.25 -30.10 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 18 Si 0.95 43.78 27.47 68.60 1.88 45.67 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 22 C 0.11 1.97 6.47 86.53 0.56 2.53 16 23 C -0.09 -1.07 2.86 -9.90 -0.03 -1.10 16 24 H 0.11 1.06 7.85 -2.39 -0.02 1.04 16 25 C 0.08 0.85 6.11 71.98 0.44 1.29 16 26 O -0.59 -7.07 13.41 -148.98 -2.00 -9.07 16 27 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.09 1.30 8.02 -2.38 -0.02 1.28 16 31 H 0.10 2.15 5.43 -2.39 -0.01 2.14 16 32 H 0.42 11.14 7.94 -92.71 -0.74 10.41 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 38 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 39 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.49 7.51 -2.39 -0.02 1.48 16 42 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.40 1.42 9.12 -74.06 -0.68 0.75 16 Total: -1.00 -73.08 360.94 -0.63 -73.70 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.46 Total: 16.38 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 4.99 Total: 4.40 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.95 Total: -97.14 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -2.10 Total: -43.01 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -73.08 -0.63 -73.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343163947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.222 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds