Wall clock time and date at job start Tue Mar 31 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47031 * 2 1 4 4 C 1.53003 * 109.47322 * 119.99698 * 2 1 3 5 5 C 1.52995 * 109.47322 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47274 * 299.99999 * 5 4 2 7 7 C 1.53009 * 109.46869 * 60.00069 * 6 5 4 8 8 C 1.52998 * 109.46826 * 299.99808 * 7 6 5 9 9 H 1.09001 * 109.46741 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47385 * 300.00155 * 8 7 6 11 11 C 1.42895 * 113.99991 * 269.99914 * 10 8 7 12 12 C 1.50693 * 109.47394 * 180.02562 * 11 10 8 13 13 O 1.21287 * 119.99834 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00506 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00259 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46924 * 179.97438 * 15 14 12 17 17 O 1.21295 * 120.00238 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00244 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 359.71836 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72227 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72075 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72111 * 23 21 19 27 27 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47483 * 300.00074 * 1 2 3 29 29 H 1.09001 * 109.47031 * 60.00059 * 1 2 3 30 30 H 1.08999 * 109.47027 * 300.00506 * 4 2 1 31 31 H 1.09004 * 109.46821 * 60.00173 * 4 2 1 32 32 H 1.09000 * 109.47028 * 59.99789 * 5 4 2 33 33 H 1.09001 * 109.47031 * 180.02562 * 5 4 2 34 34 H 1.08994 * 109.47339 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47075 * 300.00596 * 6 5 4 36 36 H 1.08999 * 109.46606 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.46925 * 59.99788 * 7 6 5 38 38 H 1.09007 * 109.47091 * 60.00138 * 11 10 8 39 39 H 1.09001 * 109.47735 * 300.00720 * 11 10 8 40 40 H 0.97005 * 119.99563 * 359.97438 * 14 12 11 41 41 H 1.08999 * 109.46977 * 60.00015 * 15 14 12 42 42 H 1.08993 * 109.47026 * 299.99632 * 15 14 12 43 43 H 0.97004 * 119.99652 * 359.97438 * 18 16 15 44 44 H 0.97000 * 120.00371 * 0.28325 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7203 -1.2489 8 6 2.0405 -0.7210 -1.2492 9 1 1.6772 -0.2067 -2.1390 10 8 1.5647 -2.0684 -1.2495 11 6 1.3714 -2.6163 -2.5550 12 6 0.8706 -4.0326 -2.4363 13 8 0.6959 -4.5243 -1.3415 14 7 0.6167 -4.7530 -3.5468 15 6 0.1293 -6.1297 -3.4314 16 6 -0.0744 -6.7075 -4.8082 17 8 0.1636 -6.0352 -5.7894 18 7 -0.5221 -7.9708 -4.9494 19 6 -0.7070 -8.4967 -6.2020 20 1 -0.4942 -7.8984 -7.0756 21 6 -1.1680 -9.7993 -6.3475 22 7 -1.4216 -10.5292 -5.2845 23 14 -1.4206 -10.5156 -8.0541 24 1 -2.8094 -10.2440 -8.5043 25 1 -0.4622 -9.8900 -9.0003 26 1 -1.1910 -11.9822 -8.0145 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2074 2.1392 31 1 1.6767 -1.7489 1.2493 32 1 3.9329 0.3072 1.2497 33 1 3.9333 -1.2348 2.1394 34 1 5.1705 -1.4408 0.0004 35 1 3.7175 -2.4694 0.0002 36 1 3.9339 -1.2342 -2.1388 37 1 3.9334 0.3074 -1.2487 38 1 2.3178 -2.6093 -3.0958 39 1 0.6395 -2.0166 -3.0961 40 1 0.7561 -4.3596 -4.4225 41 1 -0.8175 -6.1358 -2.8914 42 1 0.8604 -6.7297 -2.8897 43 1 -0.7128 -8.5083 -4.1647 44 1 -1.2909 -10.1572 -4.3983 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343514125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:29 Heat of formation + Delta-G solvation = -145.450463 kcal Electronic energy + Delta-G solvation = -24137.934968 eV Core-core repulsion = 20475.278361 eV Total energy + Delta-G solvation = -3662.656607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09022 -39.31369 -38.23473 -36.12122 -34.75152 -33.84204 -32.81813 -31.29657 -30.50409 -29.04041 -26.75954 -26.09749 -24.16047 -22.73957 -21.60389 -20.44159 -20.01391 -19.80129 -18.12674 -17.60305 -16.69502 -16.27734 -15.92630 -15.49456 -15.28729 -15.15572 -14.67042 -14.45799 -14.26824 -13.88716 -13.76783 -13.58332 -13.24810 -13.15300 -12.71004 -12.42837 -12.37628 -12.05452 -11.79673 -11.72996 -11.72275 -11.33776 -11.06742 -11.02937 -10.70845 -10.64653 -10.27838 -10.19003 -10.00545 -9.70173 -9.69982 -9.62437 -8.90963 -8.71906 -8.18811 -6.87309 -4.02120 2.72084 2.81582 3.21922 3.29662 3.48821 3.66287 3.89177 4.18403 4.40950 4.47442 4.58562 4.68622 4.81406 4.90130 4.93516 5.01821 5.05982 5.10688 5.14565 5.22363 5.27423 5.29321 5.43322 5.58547 5.62098 5.71390 5.72497 5.75045 5.81397 5.82207 5.92745 5.98061 6.06867 6.09114 6.16902 6.34765 6.52883 6.96427 7.64466 7.70325 7.94872 8.33525 8.45223 8.60972 9.31490 9.64955 10.55547 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.038177 B = 0.002338 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.246125 B =11975.200141 C =12004.543274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.142 4.142 8 C 0.091 3.909 9 H 0.061 0.939 10 O -0.346 6.346 11 C 0.045 3.955 12 C 0.512 3.488 13 O -0.528 6.528 14 N -0.708 5.708 15 C 0.111 3.889 16 C 0.430 3.570 17 O -0.591 6.591 18 N -0.561 5.561 19 C -0.387 4.387 20 H 0.102 0.898 21 C -0.006 4.006 22 N -0.893 5.893 23 Si 1.095 2.905 24 H -0.283 1.283 25 H -0.283 1.283 26 H -0.280 1.280 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.411 0.589 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.380 0.620 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 20.384 9.972 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.179 4.179 8 C 0.033 3.967 9 H 0.079 0.921 10 O -0.264 6.264 11 C -0.035 4.035 12 C 0.297 3.703 13 O -0.404 6.404 14 N -0.364 5.364 15 C -0.016 4.016 16 C 0.216 3.784 17 O -0.478 6.478 18 N -0.197 5.197 19 C -0.516 4.516 20 H 0.120 0.880 21 C -0.210 4.210 22 N -0.531 5.531 23 Si 0.921 3.079 24 H -0.210 1.210 25 H -0.208 1.208 26 H -0.205 1.205 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.249 0.751 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.213 0.787 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.098 18.968 9.440 22.345 hybrid contribution 0.516 1.408 0.601 1.616 sum 7.615 20.376 10.041 23.958 Atomic orbital electron populations 1.21802 0.94668 1.02929 1.01168 1.21206 0.96243 0.98406 0.94361 0.90412 1.21537 0.95183 1.01920 0.96427 1.21513 0.95919 1.00102 0.97943 1.21436 0.99491 1.00619 0.93853 1.22037 0.95768 1.01121 0.99009 1.22191 0.93212 0.83081 0.98207 0.92109 1.88044 1.86392 1.27361 1.24629 1.22191 1.01237 0.92891 0.87190 1.20166 0.78361 0.87305 0.84458 1.90715 1.51442 1.71727 1.26498 1.45571 1.67254 1.13971 1.09601 1.20926 1.00707 0.82977 0.97014 1.19646 0.85409 0.83587 0.89712 1.90499 1.57341 1.60106 1.39806 1.41875 1.57307 1.11472 1.09060 1.20606 1.45977 1.00080 0.84918 0.88004 1.26609 0.94750 0.92693 1.06902 1.70868 1.45139 1.38507 0.98616 0.83073 0.76951 0.76100 0.71807 1.20955 1.20826 1.20502 0.91425 0.92775 0.93082 0.92361 0.90550 0.92524 0.92118 0.92447 0.90844 0.91802 0.91186 0.90402 0.90336 0.75121 0.89838 0.89834 0.78694 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.05 37.16 0.34 -0.97 16 2 C -0.08 -0.71 2.55 -90.62 -0.23 -0.94 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -1.04 5.06 -26.73 -0.14 -1.17 16 5 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 6 C -0.12 -1.06 5.78 -26.72 -0.15 -1.22 16 7 C -0.14 -1.18 5.63 -26.73 -0.15 -1.33 16 8 C 0.09 0.83 2.35 -26.73 -0.06 0.77 16 9 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 10 O -0.35 -4.26 7.50 -55.14 -0.41 -4.68 16 11 C 0.05 0.52 6.23 36.00 0.22 0.74 16 12 C 0.51 8.03 7.91 -10.99 -0.09 7.94 16 13 O -0.53 -10.23 16.50 -14.36 -0.24 -10.47 16 14 N -0.71 -11.47 5.53 -61.48 -0.34 -11.81 16 15 C 0.11 2.03 6.15 -5.20 -0.03 1.99 16 16 C 0.43 9.78 7.85 -10.99 -0.09 9.69 16 17 O -0.59 -15.04 15.24 5.54 0.08 -14.96 16 18 N -0.56 -13.74 5.28 -10.96 -0.06 -13.80 16 19 C -0.39 -10.55 9.68 -14.93 -0.14 -10.69 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C -0.01 -0.16 5.50 -17.47 -0.10 -0.25 16 22 N -0.89 -24.55 13.68 55.50 0.76 -23.79 16 23 Si 1.10 23.61 29.92 -169.99 -5.09 18.52 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H 0.07 0.74 7.68 -51.93 -0.40 0.35 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 36 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.41 6.38 7.44 -40.82 -0.30 6.08 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.38 8.63 6.73 -40.82 -0.27 8.36 16 44 H 0.26 6.98 6.78 -40.82 -0.28 6.70 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -32.69 358.81 -7.75 -40.44 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.09 Total: 11.69 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.78 Total: 3.43 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.36 Total: -49.40 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.57 Total: -30.10 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.09 Total: 18.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.69 -7.75 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343514125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.006 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds