Wall clock time and date at job start Tue Mar 31 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46638 * 2 1 4 4 C 1.53004 * 109.46638 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.49194 * 304.96541 * 4 3 2 6 6 C 1.53097 * 109.47989 * 184.94368 * 4 3 2 7 7 C 1.53178 * 109.16320 * 182.40692 * 6 4 3 8 8 H 1.08996 * 109.54349 * 297.11136 * 7 6 4 9 9 C 1.50703 * 109.54240 * 176.93542 * 7 6 4 10 10 O 1.21279 * 120.00042 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99927 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00072 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47442 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00614 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00346 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99986 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00275 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00412 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99550 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47398 * 90.00190 * 20 18 16 22 22 H 1.48505 * 109.47102 * 209.99978 * 20 18 16 23 23 H 1.48501 * 109.47424 * 329.99579 * 20 18 16 24 24 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 25 25 C 1.53092 * 109.14859 * 303.02293 * 24 7 6 26 26 O 1.42898 * 109.48206 * 65.00072 * 4 3 2 27 27 H 1.08998 * 109.47313 * 59.99764 * 1 2 3 28 28 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 299.99767 * 1 2 3 30 30 H 1.08992 * 109.47295 * 240.00366 * 2 1 3 31 31 H 1.08999 * 109.47068 * 119.99744 * 2 1 3 32 32 H 1.09001 * 109.47510 * 60.00353 * 3 2 1 33 33 H 1.08999 * 109.47626 * 299.99377 * 3 2 1 34 34 H 1.09003 * 109.51867 * 302.31556 * 6 4 3 35 35 H 1.08997 * 109.52106 * 62.49955 * 6 4 3 36 36 H 0.97002 * 120.00311 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47099 * 300.00289 * 12 11 9 38 38 H 1.08998 * 109.47006 * 60.00489 * 12 11 9 39 39 H 0.97006 * 119.99453 * 0.02562 * 15 13 12 40 40 H 0.96999 * 119.99937 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.53319 * 183.11811 * 24 7 6 42 42 H 1.08992 * 109.51748 * 62.92028 * 24 7 6 43 43 H 1.09002 * 109.48343 * 297.61643 * 25 24 7 44 44 H 1.08999 * 109.47546 * 177.59237 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9340 0.8536 0.8412 6 6 4.0806 2.8805 0.1237 7 6 5.6111 2.8777 0.0619 8 1 6.0092 2.3197 0.9093 9 6 6.1200 4.2955 0.1079 10 8 5.3371 5.2187 0.1833 11 7 7.4452 4.5374 0.0663 12 6 7.9400 5.9156 0.1105 13 6 9.4457 5.9110 0.0497 14 8 10.0464 4.8599 -0.0239 15 7 10.1248 7.0749 0.0759 16 6 11.4946 7.0707 0.0211 17 1 12.0296 6.1347 -0.0435 18 6 12.1948 8.2705 0.0487 19 7 13.5078 8.2666 -0.0043 20 14 11.2695 9.8894 0.1613 21 1 11.0806 10.2535 1.5885 22 1 12.0484 10.9533 -0.5220 23 1 9.9440 9.7486 -0.4933 24 6 6.0573 2.2133 -1.2445 25 6 5.4702 0.8013 -1.3158 26 8 4.0460 0.8734 -1.2219 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6839 3.4800 -0.6957 35 1 3.7552 3.3015 1.0750 36 1 8.0714 3.7990 0.0064 37 1 7.5440 6.4712 -0.7396 38 1 7.6149 6.3887 1.0371 39 1 9.6443 7.9156 0.1344 40 1 13.9965 9.1042 0.0153 41 1 7.1455 2.1572 -1.2717 42 1 5.7005 2.7993 -2.0915 43 1 5.8591 0.2038 -0.4913 44 1 5.7490 0.3391 -2.2628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343526566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:46 Heat of formation + Delta-G solvation = -145.297784 kcal Electronic energy + Delta-G solvation = -24005.810905 eV Core-core repulsion = 20343.160919 eV Total energy + Delta-G solvation = -3662.649986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46842 -39.09513 -38.22322 -35.31370 -34.58812 -33.91054 -33.70473 -31.84192 -31.46977 -28.33359 -27.43995 -25.26241 -23.99875 -23.08800 -21.46769 -20.94034 -19.93762 -19.58973 -18.64476 -17.28539 -16.75198 -16.23265 -15.75123 -15.52211 -15.32116 -15.04236 -14.82441 -14.76707 -14.45858 -14.16539 -13.70745 -13.47165 -13.10161 -13.02451 -12.95883 -12.52866 -12.45816 -12.22015 -12.08735 -11.83494 -11.61360 -11.50641 -11.26812 -11.23793 -10.89226 -10.85457 -10.67581 -10.52797 -10.10094 -10.00190 -9.73773 -9.51071 -8.93741 -8.81863 -8.34436 -6.44365 -3.97094 2.68462 2.96595 3.01294 3.09325 3.20922 3.51708 3.54956 4.00225 4.31506 4.45347 4.54565 4.55712 4.65617 4.76233 4.81488 4.93824 4.98701 5.10325 5.13942 5.19726 5.32492 5.38139 5.40512 5.45027 5.56345 5.58622 5.63598 5.69246 5.74059 5.75003 5.76952 5.86724 5.90671 5.96700 6.08088 6.12028 6.51652 7.02274 7.40066 7.67807 7.96292 8.30468 8.42053 8.77782 9.25870 9.59032 10.67690 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.041006 B = 0.002439 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.661768 B =11475.104672 C =11989.099013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.090 3.910 5 H 0.058 0.942 6 C -0.128 4.128 7 C -0.107 4.107 8 H 0.098 0.902 9 C 0.517 3.483 10 O -0.548 6.548 11 N -0.707 5.707 12 C 0.105 3.895 13 C 0.437 3.563 14 O -0.580 6.580 15 N -0.575 5.575 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.150 4.150 25 C 0.065 3.935 26 O -0.377 6.377 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.276 0.724 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.486 -12.992 0.165 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.032 3.968 5 H 0.076 0.924 6 C -0.166 4.166 7 C -0.129 4.129 8 H 0.116 0.884 9 C 0.303 3.697 10 O -0.426 6.426 11 N -0.361 5.361 12 C -0.022 4.022 13 C 0.223 3.777 14 O -0.464 6.464 15 N -0.213 5.213 16 C -0.439 4.439 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.193 1.193 24 C -0.188 4.188 25 C -0.012 4.012 26 O -0.297 6.297 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.512 -12.949 0.022 25.108 hybrid contribution 0.173 1.324 0.292 1.366 sum -21.339 -11.625 0.314 24.302 Atomic orbital electron populations 1.21783 0.96011 1.01497 1.01741 1.21484 0.95533 0.96565 1.02407 1.21636 0.92537 0.97701 1.03017 1.22179 0.94764 0.92717 0.87097 0.92377 1.22039 0.93026 0.97216 1.04343 1.21354 0.97572 0.93774 1.00170 0.88389 1.20474 0.82004 0.91141 0.76076 1.90679 1.55818 1.46021 1.50054 1.45726 1.07163 1.09260 1.73926 1.20979 0.93747 0.84262 1.03262 1.19633 0.88008 0.84916 0.85135 1.90535 1.69483 1.30767 1.55619 1.42130 1.07798 1.06273 1.65094 1.19438 0.79008 0.96938 1.48556 0.86068 1.25071 0.95533 0.98194 0.97098 1.69613 1.05623 1.28006 1.47946 0.86671 0.79867 0.83747 0.79203 1.19371 1.19930 1.19252 1.22234 1.02013 0.97536 0.96998 1.22547 0.81010 0.95192 1.02449 1.87928 1.20827 1.82277 1.38625 0.92730 0.92874 0.92880 0.91203 0.92307 0.90528 0.90953 0.90076 0.90215 0.75014 0.89767 0.89749 0.79241 0.91344 0.89790 0.90305 0.92921 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.89 5.83 -26.73 -0.16 -1.05 16 3 C -0.11 -0.88 4.92 -26.73 -0.13 -1.01 16 4 C 0.09 0.81 2.64 -26.68 -0.07 0.74 16 5 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 6 C -0.13 -1.34 4.02 -26.59 -0.11 -1.44 16 7 C -0.11 -1.17 2.61 -91.57 -0.24 -1.40 16 8 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 9 C 0.52 7.54 7.16 -10.99 -0.08 7.47 16 10 O -0.55 -9.64 15.97 5.56 0.09 -9.55 16 11 N -0.71 -10.90 5.44 -61.48 -0.33 -11.24 16 12 C 0.11 1.80 6.15 -5.20 -0.03 1.77 16 13 C 0.44 9.48 7.85 -10.99 -0.09 9.39 16 14 O -0.58 -14.39 15.24 5.55 0.08 -14.31 16 15 N -0.58 -13.26 5.09 -10.97 -0.06 -13.32 16 16 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 17 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.75 13.96 55.50 0.77 -23.98 16 20 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 24 C -0.15 -1.46 5.31 -26.58 -0.14 -1.60 16 25 C 0.06 0.55 6.84 37.20 0.25 0.81 16 26 O -0.38 -3.83 9.94 -35.23 -0.35 -4.18 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.57 7.82 -51.93 -0.41 0.17 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.41 6.22 6.96 -40.82 -0.28 5.94 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 40 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -31.96 358.96 -6.98 -38.94 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.22 Total: 12.55 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.67 Total: 5.51 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.38 Total: -48.53 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.18 Total: -28.04 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.96 -6.98 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343526566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.358 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds