Wall clock time and date at job start Tue Mar 31 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46638 * 2 1 4 4 C 1.53004 * 109.46638 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.49194 * 304.96541 * 4 3 2 6 6 C 1.53097 * 109.47989 * 184.94368 * 4 3 2 7 7 C 1.53178 * 109.16320 * 182.40692 * 6 4 3 8 8 H 1.08996 * 109.54349 * 297.11136 * 7 6 4 9 9 C 1.50703 * 109.54240 * 176.93542 * 7 6 4 10 10 O 1.21279 * 120.00042 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99927 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00072 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47442 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00614 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00346 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99986 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00275 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00412 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99550 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47398 * 90.00190 * 20 18 16 22 22 H 1.48505 * 109.47102 * 209.99978 * 20 18 16 23 23 H 1.48501 * 109.47424 * 329.99579 * 20 18 16 24 24 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 25 25 C 1.53092 * 109.14859 * 303.02293 * 24 7 6 26 26 O 1.42898 * 109.48206 * 65.00072 * 4 3 2 27 27 H 1.08998 * 109.47313 * 59.99764 * 1 2 3 28 28 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 299.99767 * 1 2 3 30 30 H 1.08992 * 109.47295 * 240.00366 * 2 1 3 31 31 H 1.08999 * 109.47068 * 119.99744 * 2 1 3 32 32 H 1.09001 * 109.47510 * 60.00353 * 3 2 1 33 33 H 1.08999 * 109.47626 * 299.99377 * 3 2 1 34 34 H 1.09003 * 109.51867 * 302.31556 * 6 4 3 35 35 H 1.08997 * 109.52106 * 62.49955 * 6 4 3 36 36 H 0.97002 * 120.00311 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47099 * 300.00289 * 12 11 9 38 38 H 1.08998 * 109.47006 * 60.00489 * 12 11 9 39 39 H 0.97006 * 119.99453 * 0.02562 * 15 13 12 40 40 H 0.96999 * 119.99937 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.53319 * 183.11811 * 24 7 6 42 42 H 1.08992 * 109.51748 * 62.92028 * 24 7 6 43 43 H 1.09002 * 109.48343 * 297.61643 * 25 24 7 44 44 H 1.08999 * 109.47546 * 177.59237 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9340 0.8536 0.8412 6 6 4.0806 2.8805 0.1237 7 6 5.6111 2.8777 0.0619 8 1 6.0092 2.3197 0.9093 9 6 6.1200 4.2955 0.1079 10 8 5.3371 5.2187 0.1833 11 7 7.4452 4.5374 0.0663 12 6 7.9400 5.9156 0.1105 13 6 9.4457 5.9110 0.0497 14 8 10.0464 4.8599 -0.0239 15 7 10.1248 7.0749 0.0759 16 6 11.4946 7.0707 0.0211 17 1 12.0296 6.1347 -0.0435 18 6 12.1948 8.2705 0.0487 19 7 13.5078 8.2666 -0.0043 20 14 11.2695 9.8894 0.1613 21 1 11.0806 10.2535 1.5885 22 1 12.0484 10.9533 -0.5220 23 1 9.9440 9.7486 -0.4933 24 6 6.0573 2.2133 -1.2445 25 6 5.4702 0.8013 -1.3158 26 8 4.0460 0.8734 -1.2219 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6839 3.4800 -0.6957 35 1 3.7552 3.3015 1.0750 36 1 8.0714 3.7990 0.0064 37 1 7.5440 6.4712 -0.7396 38 1 7.6149 6.3887 1.0371 39 1 9.6443 7.9156 0.1344 40 1 13.9965 9.1042 0.0153 41 1 7.1455 2.1572 -1.2717 42 1 5.7005 2.7993 -2.0915 43 1 5.8591 0.2038 -0.4913 44 1 5.7490 0.3391 -2.2628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343526566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:45 Heat of formation + Delta-G solvation = -168.518194 kcal Electronic energy + Delta-G solvation = -24006.817818 eV Core-core repulsion = 20343.160919 eV Total energy + Delta-G solvation = -3663.656899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51875 -40.45697 -39.58644 -36.32744 -35.93882 -35.35937 -34.68289 -33.84825 -32.14820 -29.73443 -28.22840 -26.66707 -25.31776 -23.81456 -22.22302 -21.73900 -21.50243 -20.95198 -20.42436 -18.55634 -17.52393 -17.45231 -17.04798 -16.90987 -16.74129 -16.35597 -15.85417 -15.69756 -15.37107 -15.21011 -15.00238 -14.74050 -14.49644 -14.19768 -14.00835 -13.83079 -13.63163 -13.51563 -13.04009 -12.97297 -12.52668 -12.46677 -12.31114 -12.28931 -12.02255 -11.86375 -11.61790 -11.60166 -11.46463 -11.29845 -10.96880 -10.68808 -10.39018 -10.35414 -10.19974 -8.47339 -6.09384 1.29347 1.32216 1.42163 1.52930 1.77150 1.97580 2.18660 2.83493 2.88775 3.08769 3.53746 3.56658 3.75249 3.91097 3.96725 4.11692 4.15776 4.26755 4.32596 4.34705 4.37528 4.43303 4.50458 4.62417 4.69944 4.78851 4.83399 4.84342 5.00608 5.06135 5.08418 5.11416 5.19739 5.27554 5.33580 5.42455 5.46586 5.53160 5.86217 6.33788 6.44610 6.47674 6.76195 7.10959 7.27541 7.75412 8.68948 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.041006 B = 0.002439 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.661768 B =11475.104672 C =11989.099013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.111 4.111 4 C 0.092 3.908 5 H 0.073 0.927 6 C -0.124 4.124 7 C -0.102 4.102 8 H 0.120 0.880 9 C 0.519 3.481 10 O -0.577 6.577 11 N -0.709 5.709 12 C 0.116 3.884 13 C 0.445 3.555 14 O -0.613 6.613 15 N -0.578 5.578 16 C -0.332 4.332 17 H 0.064 0.936 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.234 1.234 24 C -0.146 4.146 25 C 0.064 3.936 26 O -0.392 6.392 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.391 0.609 40 H 0.281 0.719 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 -12.657 0.726 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.148 4.148 4 C 0.035 3.965 5 H 0.091 0.909 6 C -0.162 4.162 7 C -0.123 4.123 8 H 0.138 0.862 9 C 0.307 3.693 10 O -0.457 6.457 11 N -0.363 5.363 12 C -0.012 4.012 13 C 0.232 3.768 14 O -0.499 6.499 15 N -0.218 5.218 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.208 4.208 19 N -0.564 5.564 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.157 1.157 24 C -0.184 4.184 25 C -0.012 4.012 26 O -0.312 6.312 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.227 0.773 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.923 -12.639 0.579 27.063 hybrid contribution 0.941 1.089 0.105 1.443 sum -22.982 -11.550 0.684 25.730 Atomic orbital electron populations 1.21778 0.95372 1.01947 1.01875 1.21447 0.96094 0.95951 1.02178 1.21650 0.91951 0.98196 1.03027 1.22232 0.95314 0.91703 0.87255 0.90926 1.22004 0.92604 0.98051 1.03525 1.21411 0.97813 0.91508 1.01615 0.86196 1.21081 0.81136 0.92369 0.74745 1.90667 1.56324 1.47335 1.51387 1.45783 1.07688 1.08597 1.74205 1.20883 0.89572 0.85779 1.04933 1.20493 0.89976 0.83901 0.82411 1.90523 1.71020 1.32115 1.56261 1.41943 1.06249 1.07578 1.66007 1.19028 0.81020 0.95415 1.50600 0.91763 1.26063 0.96391 1.02590 0.95758 1.69774 1.07894 1.29624 1.49111 0.85451 0.79590 0.77065 0.80049 1.18056 1.19802 1.15739 1.22220 1.02324 0.98142 0.95748 1.22661 0.80273 0.94412 1.03868 1.87924 1.21702 1.82257 1.39271 0.93049 0.92290 0.92312 0.92299 0.91613 0.89497 0.91996 0.92097 0.90160 0.74782 0.88133 0.87835 0.77272 0.90897 0.89318 0.91762 0.91250 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.55 5.83 30.60 0.18 -1.37 16 3 C -0.11 -1.60 4.92 30.60 0.15 -1.45 16 4 C 0.09 1.49 2.64 30.63 0.08 1.57 16 5 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 6 C -0.12 -2.41 4.02 30.69 0.12 -2.28 16 7 C -0.10 -2.04 2.61 -11.41 -0.03 -2.07 16 8 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 9 C 0.52 14.29 7.16 87.66 0.63 14.92 16 10 O -0.58 -19.44 15.97 -3.03 -0.05 -19.49 16 11 N -0.71 -20.74 5.44 -466.81 -2.54 -23.28 16 12 C 0.12 3.73 6.15 85.63 0.53 4.25 16 13 C 0.44 19.04 7.85 87.66 0.69 19.73 16 14 O -0.61 -30.91 15.24 -3.06 -0.05 -30.96 16 15 N -0.58 -26.28 5.09 -306.99 -1.56 -27.84 16 16 C -0.33 -18.65 10.16 84.04 0.85 -17.80 16 17 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 18 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 19 N -0.92 -53.91 13.96 21.66 0.30 -53.61 16 20 Si 0.96 37.83 27.74 68.60 1.90 39.73 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 24 C -0.15 -2.63 5.31 30.69 0.16 -2.47 16 25 C 0.06 0.96 6.84 72.01 0.49 1.46 16 26 O -0.39 -7.30 9.94 -148.98 -1.48 -8.78 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.43 8.03 -2.39 -0.02 1.41 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 12.01 6.96 -92.71 -0.64 11.37 16 37 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.39 14.97 5.76 -92.70 -0.53 14.44 16 40 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.09 1.51 7.70 -2.39 -0.02 1.49 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.80 358.96 1.33 -70.47 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.24 Total: 40.21 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 5.04 Total: 13.54 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.80 Total: -104.73 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -1.58 Total: -59.23 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -71.80 1.33 -70.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343526566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.047 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds