Wall clock time and date at job start Tue Mar 31 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99653 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00192 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99910 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00033 * 9 7 5 12 12 H 1.48501 * 109.47006 * 329.99902 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21284 * 120.00066 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99838 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.55425 * 55.69696 * 17 15 14 19 19 C 1.55004 * 110.61923 * 292.82048 * 17 15 14 20 20 C 1.54980 * 102.01166 * 204.59581 * 19 17 15 21 21 C 1.54094 * 104.25450 * 20.66794 * 20 19 17 22 22 H 1.09003 * 110.00376 * 242.66576 * 21 20 19 23 23 C 1.50706 * 109.88085 * 121.58937 * 21 20 19 24 24 N 1.34775 * 120.00062 * 65.70911 * 23 21 20 25 25 O 1.21277 * 119.99847 * 245.71728 * 23 21 20 26 26 O 1.43746 * 107.29617 * 2.16235 * 21 20 19 27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 33 33 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 35 35 H 0.96997 * 120.00125 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 38 38 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 39 39 H 1.08998 * 110.90437 * 322.67950 * 19 17 15 40 40 H 1.08998 * 110.90492 * 86.27364 * 19 17 15 41 41 H 1.08997 * 110.34578 * 262.02313 * 20 19 17 42 42 H 1.09006 * 110.56965 * 139.42157 * 20 19 17 43 43 H 0.97003 * 119.99965 * 0.02562 * 24 23 21 44 44 H 0.96998 * 120.00232 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 1.4325 0.1380 -4.8058 9 14 2.9451 -2.0005 -3.9033 10 1 2.0864 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1559 12 1 3.8650 -2.0900 -2.7410 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5756 -1.4765 3.7808 17 6 1.3748 0.2192 4.9000 18 1 0.2876 0.2955 4.8804 19 6 2.0184 1.6241 5.0207 20 6 1.9197 1.8943 6.5436 21 6 1.7561 0.4948 7.1674 22 1 0.7942 0.4230 7.6751 23 6 2.8725 0.2362 8.1462 24 7 2.9657 0.9718 9.2717 25 8 3.6870 -0.6336 7.9211 26 8 1.8153 -0.4607 6.0950 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 1.6668 -0.1934 -5.6868 36 1 3.1299 -0.7217 1.2491 37 1 1.6766 -1.7490 1.2492 38 1 0.9937 0.7578 2.3564 39 1 3.0589 1.6044 4.6969 40 1 1.4502 2.3622 4.4545 41 1 1.0502 2.5138 6.7630 42 1 2.8302 2.3703 6.9079 43 1 2.3140 1.6674 9.4519 44 1 3.6840 0.8052 9.9019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:01 Heat of formation + Delta-G solvation = -163.703072 kcal Electronic energy + Delta-G solvation = -24587.730075 eV Core-core repulsion = 20924.281976 eV Total energy + Delta-G solvation = -3663.448100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68128 -40.63467 -39.24956 -38.41475 -35.28133 -34.88108 -34.09530 -33.00619 -31.17062 -29.67081 -27.95648 -27.75784 -25.64047 -24.12395 -23.14634 -21.55491 -21.44139 -19.89311 -18.98350 -18.88692 -18.10636 -17.78460 -17.56427 -16.94007 -16.33281 -16.24570 -16.01332 -15.53999 -15.28427 -15.22388 -15.10513 -14.67145 -14.55352 -14.23347 -14.14113 -13.86309 -13.24074 -12.94233 -12.83237 -12.77926 -12.63599 -12.55879 -12.29273 -12.16185 -11.97902 -11.78339 -11.50835 -11.44718 -11.26758 -10.92841 -10.79966 -10.70960 -10.70719 -10.55290 -10.10442 -8.22912 -6.22207 1.34328 1.37845 1.47385 1.50733 1.56589 1.78594 2.38219 2.40034 3.06236 3.12683 3.38844 3.70485 3.81388 3.92219 3.96484 4.04485 4.07531 4.09843 4.17339 4.40946 4.61949 4.64914 4.70870 4.78657 4.85356 4.95520 4.97742 5.03020 5.07107 5.12089 5.30157 5.36456 5.41972 5.45567 5.56416 5.61975 5.72011 5.77436 5.88522 6.37863 6.45735 6.56409 6.84524 7.23743 7.33180 7.40520 8.92430 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.002776 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.841501 B =10085.687794 C =10466.772101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.056 4.056 3 C -0.124 4.124 4 C -0.006 4.006 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.256 1.256 13 C 0.138 3.862 14 N -0.700 5.700 15 C 0.506 3.494 16 O -0.583 6.583 17 C 0.058 3.942 18 H 0.143 0.857 19 C -0.142 4.142 20 C -0.132 4.132 21 C 0.048 3.952 22 H 0.138 0.862 23 C 0.506 3.494 24 N -0.826 5.826 25 O -0.591 6.591 26 O -0.369 6.369 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.417 0.583 39 H 0.058 0.942 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.423 0.577 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 10.721 29.192 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.180 1.180 13 C 0.014 3.986 14 N -0.354 5.354 15 C 0.293 3.707 16 O -0.462 6.462 17 C -0.002 4.002 18 H 0.160 0.840 19 C -0.180 4.180 20 C -0.169 4.169 21 C -0.013 4.013 22 H 0.156 0.844 23 C 0.291 3.709 24 N -0.393 5.393 25 O -0.470 6.470 26 O -0.287 6.287 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.256 0.744 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.106 0.894 43 H 0.255 0.745 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.802 9.213 28.806 30.481 hybrid contribution 0.591 -0.521 -0.669 1.033 sum -3.211 8.693 28.137 29.624 Atomic orbital electron populations 1.21720 0.93504 1.01295 1.01654 1.20542 0.96766 0.96236 0.92112 1.21712 1.00113 0.94614 1.01673 1.19596 0.95839 0.95513 0.93487 1.21351 1.30138 1.12298 0.89851 0.92486 1.25782 0.97410 0.99685 0.96029 1.70023 1.48090 1.42574 0.98391 0.85961 0.79969 0.80716 0.77806 1.19816 1.21409 1.17971 1.21288 0.98088 0.95649 0.83608 1.45777 1.53259 1.32265 1.04105 1.20960 0.80000 0.84211 0.85527 1.90738 1.39538 1.28602 1.87329 1.23310 1.01657 0.92023 0.83244 0.84016 1.23247 1.02072 0.94301 0.98339 1.23056 1.06667 0.93923 0.93274 1.23096 0.98314 0.90867 0.89013 0.84433 1.21080 0.85954 0.80664 0.83251 1.43547 1.34641 1.39086 1.22018 1.90801 1.44417 1.34893 1.76915 1.89131 1.88342 1.34273 1.16995 0.90634 0.93360 0.93897 0.94018 0.93353 0.90584 0.97031 0.97123 0.92864 0.93234 0.93001 0.74382 0.92292 0.84571 0.83991 0.89369 0.74480 0.75886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -1.94 0.54 -52.18 -0.03 -1.97 16 3 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 4 C -0.01 -0.29 3.11 29.85 0.09 -0.20 16 5 C -0.50 -26.80 8.20 25.60 0.21 -26.59 16 6 H 0.06 3.26 5.92 -2.91 -0.02 3.24 16 7 C 0.01 0.42 5.47 84.66 0.46 0.88 16 8 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 9 Si 0.93 44.95 27.47 68.60 1.88 46.83 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 13 C 0.14 4.48 4.56 86.38 0.39 4.87 16 14 N -0.70 -17.21 4.96 -463.05 -2.30 -19.51 16 15 C 0.51 14.67 7.20 87.66 0.63 15.30 16 16 O -0.58 -24.54 16.57 15.19 0.25 -24.29 16 17 C 0.06 1.08 3.76 30.53 0.11 1.19 16 18 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 19 C -0.14 -1.58 6.59 31.96 0.21 -1.37 16 20 C -0.13 -0.77 6.62 31.64 0.21 -0.56 16 21 C 0.05 0.66 3.84 30.22 0.12 0.78 16 22 H 0.14 0.78 8.14 -2.39 -0.02 0.77 16 23 C 0.51 9.70 7.22 87.66 0.63 10.33 16 24 N -0.83 -5.84 8.86 -173.53 -1.54 -7.37 16 25 O -0.59 -20.16 17.36 15.69 0.27 -19.89 16 26 O -0.37 -9.74 10.02 -121.19 -1.21 -10.95 16 27 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 28 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 32 H 0.08 1.68 6.86 -2.39 -0.02 1.66 16 33 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 34 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.42 6.98 6.16 -92.71 -0.57 6.41 16 39 H 0.06 1.01 8.05 -2.39 -0.02 0.99 16 40 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.14 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.09 0.52 7.69 -2.38 -0.02 0.50 16 43 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 44 H 0.41 2.65 8.93 -92.71 -0.83 1.82 16 Total: -1.00 -92.14 353.91 0.63 -91.50 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -1.23 Total: 5.56 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 4.21 Total: -3.97 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -3.53 Total: -84.80 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.69 Total: -55.13 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -92.14 0.63 -91.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.198 kcal (2) G-P(sol) polarization free energy of solvation -92.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds