Wall clock time and date at job start Tue Mar 31 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.08996 * 109.46857 * 305.93367 * 3 2 1 5 5 N 1.46495 * 109.46957 * 65.93292 * 3 2 1 6 6 C 1.34777 * 120.00192 * 274.99692 * 5 3 2 7 7 O 1.21276 * 120.00068 * 0.02562 * 6 5 3 8 8 C 1.50695 * 119.99888 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47160 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47295 * 179.97438 * 9 8 6 11 11 H 1.07991 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99983 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99707 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99937 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47291 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46957 * 119.99954 * 14 12 10 17 17 H 1.48497 * 109.47150 * 239.99779 * 14 12 10 18 18 C 1.50697 * 109.46704 * 185.93322 * 3 2 1 19 19 O 1.21280 * 120.00023 * 263.11340 * 18 3 2 20 20 N 1.34785 * 119.99794 * 83.12057 * 18 3 2 21 21 C 1.47143 * 120.98013 * 4.73907 * 20 18 3 22 22 C 1.53721 * 108.15979 * 129.43693 * 21 20 18 23 23 O 1.42962 * 109.14870 * 52.53286 * 22 21 20 24 24 C 1.42960 * 114.16557 * 297.29219 * 23 22 21 25 25 C 1.47151 * 120.97772 * 185.02243 * 20 18 3 26 26 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47241 * 300.00229 * 1 2 3 28 28 H 1.09001 * 109.47380 * 59.99918 * 1 2 3 29 29 H 1.08998 * 109.46902 * 119.99495 * 2 1 3 30 30 H 1.08998 * 109.47241 * 239.99771 * 2 1 3 31 31 H 0.97006 * 119.99758 * 94.99943 * 5 3 2 32 32 H 1.09002 * 109.47566 * 299.99874 * 8 6 5 33 33 H 1.08995 * 109.47537 * 59.99867 * 8 6 5 34 34 H 1.08993 * 109.47311 * 300.00335 * 9 8 6 35 35 H 1.09011 * 109.46924 * 59.99973 * 9 8 6 36 36 H 0.97002 * 119.99624 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.68372 * 249.20782 * 21 20 18 38 38 H 1.08997 * 109.68773 * 9.76437 * 21 20 18 39 39 H 1.08999 * 109.65382 * 292.56615 * 22 21 20 40 40 H 1.09003 * 109.48166 * 172.39793 * 22 21 20 41 41 H 1.09001 * 109.51172 * 302.65538 * 24 23 22 42 42 H 1.08999 * 109.54865 * 182.53457 * 24 23 22 43 43 H 1.08998 * 109.68691 * 350.23273 * 25 20 18 44 44 H 1.09000 * 109.68091 * 110.75445 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5925 1.9861 -0.8321 5 7 1.6717 2.0907 1.2611 6 6 0.4563 2.6569 1.3980 7 8 -0.3326 2.6295 0.4774 8 6 0.0777 3.3241 2.6951 9 6 -1.3429 3.8815 2.5863 10 6 -1.7218 4.5482 3.8837 11 1 -1.0194 4.5723 4.7036 12 6 -2.9652 5.1274 4.0238 13 7 -3.8207 5.0976 3.0253 14 14 -3.4345 5.9543 5.6316 15 1 -2.3039 5.8528 6.5890 16 1 -3.7430 7.3851 5.3807 17 1 -4.6295 5.2831 6.2031 18 6 3.5398 1.4450 -0.1469 19 8 4.2451 1.5359 0.8355 20 7 4.0972 1.3463 -1.3700 21 6 3.2649 1.3392 -2.5834 22 6 3.8303 2.3845 -3.5584 23 8 5.2270 2.1440 -3.7457 24 6 6.0091 2.2812 -2.5569 25 6 5.5558 1.2363 -1.5310 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.3026 2.1123 1.9976 32 1 0.1215 2.5956 3.5048 33 1 0.7723 4.1384 2.9012 34 1 -1.3864 4.6101 1.7768 35 1 -2.0379 3.0674 2.3801 36 1 -4.6953 5.5054 3.1238 37 1 3.2941 0.3511 -3.0428 38 1 2.2372 1.5943 -2.3252 39 1 3.6847 3.3842 -3.1491 40 1 3.3154 2.3046 -4.5158 41 1 5.8714 3.2805 -2.1439 42 1 7.0619 2.1268 -2.7931 43 1 6.0458 1.4233 -0.5755 44 1 5.8117 0.2378 -1.8856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362024306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:05 Heat of formation + Delta-G solvation = -122.302350 kcal Electronic energy + Delta-G solvation = -24891.191465 eV Core-core repulsion = 21229.538635 eV Total energy + Delta-G solvation = -3661.652830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97284 -39.45004 -38.43629 -35.41340 -35.11945 -33.44773 -32.31920 -31.85881 -30.76993 -28.79731 -27.16919 -25.46503 -24.48319 -22.86344 -22.14319 -21.08851 -19.88487 -19.51188 -17.79631 -17.11322 -16.64840 -16.44832 -16.15303 -15.68424 -15.55325 -15.41183 -15.22017 -14.85731 -14.42073 -14.12965 -13.88189 -13.55003 -13.16232 -12.99871 -12.71355 -12.29321 -12.19399 -12.04788 -11.93619 -11.80533 -11.47270 -11.17630 -11.14488 -10.96109 -10.85199 -10.62070 -10.57728 -10.01667 -9.95033 -9.66156 -9.19469 -9.03827 -8.99861 -8.83465 -8.32163 -5.96481 -4.00337 2.20732 2.36892 3.19095 3.32858 3.35782 3.39894 3.43229 3.51034 4.04782 4.25957 4.47857 4.50094 4.60891 4.66023 4.76764 4.85758 4.87575 5.06913 5.16263 5.20964 5.28069 5.32432 5.38836 5.45267 5.46698 5.67673 5.73219 5.94629 5.96789 6.15304 6.23478 6.26188 6.53790 6.58819 6.62353 6.89225 6.90456 7.72913 7.74716 7.85708 7.86144 8.06524 8.38782 8.72418 9.08183 9.63281 11.14450 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.002915 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.684999 B = 9602.305145 C = 9713.196414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.128 3.872 4 H 0.108 0.892 5 N -0.728 5.728 6 C 0.514 3.486 7 O -0.529 6.529 8 C -0.130 4.130 9 C 0.039 3.961 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.519 3.481 19 O -0.532 6.532 20 N -0.615 5.615 21 C 0.066 3.934 22 C 0.046 3.954 23 O -0.380 6.380 24 C 0.048 3.952 25 C 0.076 3.924 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.407 0.593 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.658 -10.157 -13.074 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.019 3.981 4 H 0.126 0.874 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.404 6.404 8 C -0.170 4.170 9 C 0.001 3.999 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.307 3.693 19 O -0.408 6.408 20 N -0.351 5.351 21 C -0.057 4.057 22 C -0.031 4.031 23 O -0.298 6.298 24 C -0.030 4.030 25 C -0.046 4.046 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.243 0.757 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.349 -10.103 -13.424 24.879 hybrid contribution -0.080 0.490 1.370 1.457 sum 18.269 -9.613 -12.054 23.906 Atomic orbital electron populations 1.21816 0.93240 1.01010 1.04177 1.21859 0.98292 0.93662 1.02493 1.20834 0.90026 0.96280 0.91001 0.87425 1.46097 1.17999 1.59382 1.15017 1.21562 0.79900 0.76826 0.91393 1.90664 1.49798 1.57941 1.42018 1.21883 1.03152 0.99789 0.92147 1.18898 0.87509 0.96416 0.97077 1.21269 0.99785 1.36222 0.99163 0.92553 1.25020 0.96570 0.96295 0.96507 1.70008 1.07115 1.44772 1.30969 0.86540 0.78447 0.79198 0.83815 1.19736 1.21039 1.21022 1.20857 0.90830 0.75135 0.82482 1.90685 1.63701 1.49112 1.37279 1.48092 1.07269 1.73756 1.05953 1.22707 0.96073 1.01211 0.85676 1.23094 0.82190 0.97588 1.00271 1.87970 1.18265 1.91396 1.32137 1.22995 0.96167 0.98176 0.85657 1.22315 0.80551 1.00178 1.01565 0.93187 0.91324 0.91910 0.91181 0.91336 0.75699 0.90105 0.90163 0.95825 0.95761 0.93038 0.89865 0.87984 0.92191 0.87183 0.92420 0.87481 0.87907 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.53 37.16 0.32 -1.63 16 2 C -0.12 -1.41 5.59 -26.73 -0.15 -1.56 16 3 C 0.13 1.61 1.90 -69.08 -0.13 1.48 16 4 H 0.11 1.38 5.57 -51.93 -0.29 1.09 16 5 N -0.73 -10.85 5.01 -54.94 -0.28 -11.12 16 6 C 0.51 9.57 6.44 -10.99 -0.07 9.50 16 7 O -0.53 -11.32 13.12 5.56 0.07 -11.24 16 8 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 C 0.52 6.36 6.93 -10.98 -0.08 6.28 16 19 O -0.53 -7.93 15.44 5.56 0.09 -7.84 16 20 N -0.62 -5.88 3.01 -172.02 -0.52 -6.40 16 21 C 0.07 0.49 6.37 -3.32 -0.02 0.47 16 22 C 0.05 0.33 7.00 37.53 0.26 0.59 16 23 O -0.38 -3.25 10.74 -35.23 -0.38 -3.63 16 24 C 0.05 0.34 6.98 37.31 0.26 0.60 16 25 C 0.08 0.62 6.65 -3.53 -0.02 0.60 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.14 5.62 -51.93 -0.29 0.85 16 28 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.63 7.97 -51.93 -0.41 0.21 16 31 H 0.41 5.71 7.76 -40.82 -0.32 5.39 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.74 5.50 -51.93 -0.29 0.45 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.92 7.06 -51.93 -0.37 0.56 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -34.55 353.39 -7.28 -41.83 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.98 Total: 2.12 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.32 Total: 0.78 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.06 Total: -44.03 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.22 Total: -22.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.55 -7.28 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362024306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.476 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds